BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41240.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902084 jgi|Araly1|902084|Al_scaffold_0004_2734 1064 0.0
Ahg324207 jgi|Araly1|324207|fgenesh1_pm.C_scaffold_5001751 268 3e-71
> Ahg902084 jgi|Araly1|902084|Al_scaffold_0004_2734
Length=729
Score = 1064 bits (576), Expect = 0.0
Identities = 680/731 (93%), Gaps = 4/731 (1%)
Strand=Plus/Plus
Query 1 ATGTGTGCACTTGTCCCTCCATTATATCCCAATTTCGGCTGGCCTTGCGGAGATCATAGC 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1 ATGTGTGCACTTGTCCCTCCATTATATCCCAACTTCGGCTGGCCTTGCGGAGATAATAGC 60
Query 61 TTCTATGAAACCGACGACGTATCCAACACGTTTCTTGATTTTCCGTTGCCGGACTTGACG 120
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTATGAAAACGAAGACGTAACCAACACGTTTCTTGATTTTCCGTTGCCGGACTTGACG 120
Query 121 GTGACTCATGAGAATGTGTCGTCTGAGAATAACAGAACATTACTAGACAATCCCGTGGTG 180
||||||||| |||||||||| || || ||||| |||| ||||||||||||||||||||||
Sbjct 121 GTGACTCATCAGAATGTGTCATCGGAAAATAATAGAATATTACTAGACAATCCCGTGGTG 180
Query 181 ATGAAGAAGCTTAATCACAACGCGAGTGAACGTGAGCGTCGCAAGAAGATCAACACAATG 240
|||||||| ||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 181 ATGAAGAAACTTAATCACAACGCGAGCGAGCGTGAGCGTCGCAAGAAGATCAACGCAATG 240
Query 241 TTCTCATCTCTTCGTTCTTGTCTTCCTCCCACCAATCAAACGAAGAAGTTAAGTGTTTCG 300
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 241 TTCTCATCTCTTCGTTCTTGTCTTCCGGCCACCAATCAATCGAAGAAGCTAAGTGTTTCC 300
Query 301 GCAACAGTTTCACAAGCATTGAAGTACATACCAGAGCTGCAAGAGCAAGTTAAAAAGCTC 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GCAACAGTTTCACAGGCATTGAAGTACATACCAGAGCTGCAAGAGCAAGTTAAAAATCTC 360
Query 361 ATGAAGAAGAAAGAAGAGCTCTCGTTTCAAATTTCGGGTCAAAGAGATCTCGTTTAC-AC 419
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 361 ATAAAGAAGAAAGAAGAGCTCTCGTTTCAAATATCGGGTCAAAGAGATCTCGTTT-CTAC 419
Query 420 CGACCAAAACAGTAAGTCAGAGGAAGGGGTTACAAGCTATGCGTCGACAGTTTCTTCGAC 479
|| ||||||||||||| ||||| || | | ||||| ||||| || ||||||||| ||||
Sbjct 420 CGGCCAAAACAGTAAGCCAGAGAAAACGATCACAAGTTATGCATCAACAGTTTCTGCGAC 479
Query 480 TAGGCTCAGTGAGACTGAAGTGATGGTCCAAATTTCATCGTTACAGACTGAAAAATGTTC 539
|||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 AAGGCTCTGTGAGACCGAAGTGATGGTCCAAATTTCATCGTTACAGGCTGAAAAATGTTC 539
Query 540 GTTTGGGAATGT-CTTGAGTGGTGTAGAAGAAGATGGGTTGGTTCTTGTGGGTGCTTCAT 598
|||||||||||| | ||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 540 GTTTGGGAATGTGC-TGAGTGGAGTAGAAGAAGATGGGTTGGTTCTTGTGGATGCTTCAT 598
Query 599 CTTCAAGGTCTCATGGAGAGCGACTCTTTTACTCTATGCATCTTCAGATAAAAAATGGCC 658
| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 599 CCTCAAGGTCTCAAGGAGAGCGACTCTTTTACTCTTTGCATCTTCAGATGGAAAATGGCC 658
Query 659 AGGTGAATTCCGAAGAATTAGGTGATAGATTGTTGTACTTGTACGAGAAATGTGGACACT 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGTGAATTCCGAAGAGTTAGGTGATAGATTGTTGTACTTGTACGAGAAATGTGGACACT 718
Query 719 CGTTTACATGA 729
|||||||||||
Sbjct 719 CGTTTACATGA 729
> Ahg324207 jgi|Araly1|324207|fgenesh1_pm.C_scaffold_5001751
Length=777
Score = 268 bits (145), Expect = 3e-71
Identities = 442/580 (76%), Gaps = 41/580 (7%)
Strand=Plus/Plus
Query 167 ACAATCCCGTGGT-GATGAAGAAGCTTAATCACAACGCGAGTGAACGTGAGCGTCGCAAG 225
||||||| ||||| | | ||||||||||||||||| || ||||| ||||| |||||||||
Sbjct 209 ACAATCCGGTGGTCG-TCAAGAAGCTTAATCACAATGCTAGTGAGCGTGACCGTCGCAAG 267
Query 226 AAGATCAACACAATGTTCTCATCTCTTCGTTCTTGTCTTCCTCCCACCAATCAAACGAAG 285
|| || ||| | ||||||||||||| ||||| ||||||||| || || | ||| |||||
Sbjct 268 AAAATTAACTCTTTGTTCTCATCTCTCCGTTCATGTCTTCCTGCCTCCGACCAATCGAAG 327
Query 286 AAGTTAAGTGTTTCGGCAACAGTTTCAC-AAGCATTGAAGTACATACCAGAGCTGCAAGA 344
||| |||| || | || |||||||| | |||| ||||||||||||||||||||||||||
Sbjct 328 AAGCTAAGCATTCCTGCGACAGTTTCTCGAAGC-TTGAAGTACATACCAGAGCTGCAAGA 386
Query 345 GCAAGTTAAAAAGCTCATGAAGAAGAAAGAAGAGCTCTCGTTTCAAATTTCGGGTCAAAG 404
|||||| || ||||| || || ||||| ||||| |||| | | ||| | || ||||||||
Sbjct 387 GCAAGTGAAGAAGCTAATAAAAAAGAAGGAAGAACTCTTGGTGCAAGTGTCAGGTCAAAG 446
Query 405 AGATCTCGTTTA-CACCGACCAAAA-CAGTAAGTCAGAGGAAGG-GGTTACAAGCTA--T 459
| | | || | || || || | | || || ||| || || | || || |
Sbjct 447 AAA-CA--TTGAACATT-ACGTTAAGCCGCAAC-CAAAGGC-GGTGG---CGAGTTACAT 497
Query 460 GCGTCGACAGTTTCTTCGACTAGGCTCAGTGAGA-CTGAAGTGATGGTCCAAATTTCATC 518
| ||||| || ||| |||||||||| | || | | ||||||||||||||||| |||||
Sbjct 498 -C-TCGACCGTGTCTGCGACTAGGCTTGGAGACAAC-GAAGTGATGGTCCAAATCTCATC 554
Query 519 GT-TACAGACTGAAAAATGTTCGTT-TGGGAATGTCTTGAGTGGTGT-AGAAGAAGATGG 575
|| || ||| | | || | |||| | | ||||| || ||||| || ||||||||||||
Sbjct 555 GTCTA-AGATTCATAACTTTTCGATATCT-AATGTTTTAAGTGG-GTTAGAAGAAGATGG 611
Query 576 GTTGGTTCTTGTGGGTGCTTCATCTTCAAGGTCTCATGGAGAGCGACTCTTT-TACTCTA 634
||| |||||||||| | |||||||||||||||||| ||||| | || ||| ||| ||
Sbjct 612 GTTTGTTCTTGTGGATATTTCATCTTCAAGGTCTCAAGGAGAAAGGCT-TTTCTACACTT 670
Query 635 TGCATCTTCAGAT--A-AA-A---AA--TGGCCAGGTGAATTCCGAAGAATTAGGTGATA 685
| ||||| || || | || | || | | || |||||| |||||| ||| || | |
Sbjct 671 TCCATCTACAAATGGACAAGATTGAAAATTACAAGCTGAATTGCGAAGAGTTAAGTCAGA 730
Query 686 G-ATTGTTGTACTTGTACGAGAAATGTGGACACTCGTTTA 724
| || |||||||||||| ||| |||||||| |||| ||||
Sbjct 731 GGAT-GTTGTACTTGTATGAGGAATGTGGAAACTCATTTA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5