BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41250.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934945 jgi|Araly1|934945|scaffold_402933.1 1365 0.0
> Ahg934945 jgi|Araly1|934945|scaffold_402933.1
Length=904
Score = 1365 bits (739), Expect = 0.0
Identities = 865/922 (94%), Gaps = 23/922 (2%)
Strand=Plus/Plus
Query 47 TCAATCATACAGA-AGCAGCTAATGGCGTTG---AGAATCAGGAAGGCGACGACGACACT 102
|||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCAATC--ACAGAGAGAAGCTAATGGCGTTGTTAAGAATCAGGAAGGCGACGACGACACT 58
Query 103 TCTCT-TCTCCGGTGGGATTACTCATGGAACGGATCGGATCGCGAGAACCGGAGCATTGC 161
||||| | |||||| | || |||||||||||||||||||||||||||||||
Sbjct 59 TCTCTAT-TCCGGT--G---------GG-ACGGATCGGATCGCGAGAACCGGAGCATTGC 105
Query 162 TCAGCCGTTGGATCTCCTCTGCTTCGTCATCTTCCGCTGTTGTAGCGGATGATGAATCTA 221
| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 106 TGAGCCGTTGGATCTCCTCCGCTTCGTCATCTTCCGCTGTTGTGGCGGAGGATGAATCTG 165
Query 222 GTGGGATTTACGGATTGGGAAGTGTGTTGAAAGAGTATGAAGATTATAGGAGATCTCTCT 281
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 166 GTGGGATTTACGGATTGGGAAGTGTATTGAAGGAGTATGAAGATTATAGGAGATCTCTCT 225
Query 282 ATGGTGAGATCACTCATAAGGCTTTGCTTGTTGATGCTGTTGGTACTCTCCTTGTTCCCG 341
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 226 ACGGTGAGATCACTCATAAGGCGTTGCTTGTTGATGCTGTTGGTACTCTCCTTGTTCCCG 285
Query 342 CTCAACCTACTGCTCAGATATATAAGAATATTGGAGAGAAGTACGGAGTGGAGTACTCGG 401
|||||||||| ||||||||||| ||||||||||| ||||||||||| || ||||||||||
Sbjct 286 CTCAACCTACGGCTCAGATATACAAGAATATTGGTGAGAAGTACGGGGTCGAGTACTCGG 345
Query 402 AGGCTGAGATACTTACTAGATACAGAAGAGCTTATCAGAAACCATGGGGTGGATCTCATC 461
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 346 AGGCTGAGATACTTACTAGATACAGAAGAGCTTATCAGAAACCATGGGGCGGATCTCATC 405
Query 462 TTAGATATGTAAACGATGCAAGACCTTTCTGGCAGTATATAGTGACTGCATCAACAGGCT 521
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TTAGATATGTCAACGATGCGAGACCTTTCTGGCAGTATATAGTGACTGCATCAACAGGCT 465
Query 522 GCTCGGATTCACAGTACTTTGAAGAGCTTTACAGCTATTTTACTACAGAACAGGCGTGGA 581
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 466 GCTCGGATTCTCAGTACTTTGAAGAGCTTTACAGTTATTTTACTACAGAACAGGCGTGGA 525
Query 582 AGTTATGTGATCCAGATGCAGGGAAAGTGTTTAAGGCTATTAAAGAAGCGGGTGTAAAAG 641
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 526 AGTTATGTGATCCAGATGCAGGGAGAGTGTTTAAGGCTATTAAAGAAGCGGGTGTGAAAG 585
Query 642 TTGCAATAGTCTCCAACTTCGATACTCGGTTAAGACCTCTCCTACGTGCATTGAGATGTG 701
||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 586 TTGCAATTGTGTCCAACTTCGATACTCGGTTAAGACCACTCCTACGTGCACTGAGATGTG 645
Query 702 AAGATTGGTTTGATGCTGTAGCTGTTTCAGCAGAAGTTGAAGCGGAAAAACCAAACCCGA 761
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 646 AAGACTGGTTTGATGCTGTAGCTGTTTCAGCAGAAGTTGAAGCGGAGAAACCAAACCCGA 705
Query 762 CTATCTTCTTAAAAGCTTGTGAGTTATTAGAAGTGAATCCCGAGGATGCGGTTCATGTAG 821
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 706 CTATCTTCTTGAAAGCTTGTGAGTTATTAGAAGTGAATCCTGAGGATGCGGTTCATGTAG 765
Query 822 GAGATGACCGTAGGAATGATGTATGGGGAGCTAGAGACGCAGGCTGTGACGCTTGGCTCT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GAGATGACCGTAGGAATGATGTATGGGGAGCTAGAGACGCAGGCTGTGACGCTTGGCTCT 825
Query 882 GGGGAAGTGAAGTTACGTCATTTAAACAGGTTGCTCAACGGATAGGAGTGAAGGTCTGAA 941
|||||||||||||||| || || ||||||||||||||||||||||||||||||| |||||
Sbjct 826 GGGGAAGTGAAGTTACTTCGTTCAAACAGGTTGCTCAACGGATAGGAGTGAAGGGCTGAA 885
Query 942 GCAAAAGCATATGAGAGAAATG 963
||||| |||| ||||||||||
Sbjct 886 GCAAA-GCAT--GAGAGAAATG 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5