BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41290.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483200 jgi|Araly1|483200|fgenesh2_kg.4__2260__AT2G41290.1 1692 0.0
> Ahg483200 jgi|Araly1|483200|fgenesh2_kg.4__2260__AT2G41290.1
Length=1195
Score = 1692 bits (916), Expect = 0.0
Identities = 1109/1202 (92%), Gaps = 14/1202 (1%)
Strand=Plus/Plus
Query 39 aaaaaaaTCTGAACAAAATGATGAAACTCCTCTTGGTGGTGGCAACT-TCTGTTGCCCTT 97
||||||||||||| ||||||||||||||||| ||||||||||||| | ||| ||||||||
Sbjct 1 AAAAAAATCTGAAGAAAATGATGAAACTCCTTTTGGTGGTGGCAA-TATCTTTTGCCCTT 59
Query 98 ATCTTTAGCGTCACTGATTTATCCGGTGAGGGACCAAAACATGGAGGAGAATCCATGTTG 157
|||| ||| |||||||||| ||||||||| ||||||||||| ||||| |||||||||
Sbjct 60 CTCTTAAGCCTCACTGATTTTTCCGGTGAGAGACCAAAACAT---GGAGATTCCATGTTG 116
Query 158 ACAGTCCAAATCCCTGATTTCCGTCTGATTCCTACCACCGGAGCTTTGGGACCGGAGAGT 217
||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 117 ACAGTCCAATTCCCTGATTTCCGTCTGCTTCCGACCACCGGGGCTTTGGGACCGGAGAGT 176
Query 218 TTTGTCTTTGATTTTTTCGGCGATGGTCCTTACACCGGTTTATCTGACGGTCGAATTGTT 277
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 177 TTTGTCTTCGATTTTTCCGGCGACGGTCCTTACACCGGTTTATCTGACGGTCGAATTGTT 236
Query 278 AAGTGGCTAGCTAATGAGAGCCGTTGGATCGATTTCGCCGTCACCACCTCCGCAAGAGAA 337
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 AAGTGGCTAGCTAATGACAGCCGTTGGATCGATTTCGCCGTCACCACCTCCACAAGAGAA 296
Query 338 GGTTGTGAGGGCCCGCACGAGCACCAACGAACAGAACACGTGTGTGGACGACCATTGGGC 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGTTGTGAGGGCCCGCACGAGCACCAACGAACAGAACACGTGTGTGGACGACCATTGGGC 356
Query 398 CTTGCCTTTGACAAATCCACTGGTGACCTTTATATAGCCGATGCTTATATGGGCCTTCTT 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTTGCCTTTGACAAATCCACTGGTGACCTTTATATAGCCGATGCTTATATGGGCCTTCTT 416
Query 458 AAAGTTGGCCCAACAGGTGGTGTCGCCACTCAGGTGTTACCACGTGAGCTAAATGAGGCC 517
||||||||||||||||||||||| |||| ||| | || ||||||||||| |||||||||
Sbjct 417 AAAGTTGGCCCAACAGGTGGTGTAGCCAATCAAATTTTGCCACGTGAGCTGAATGAGGCC 476
Query 518 CTTCGATTTACCAATTCTTTGGATATCAATCCACGGACCGGAGTTGTCTACTTTACCGAC 577
||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||
Sbjct 477 CTTCGATTTACCAATTCATTGGATATCGATCCACAAACCGGAGTTATCTACTTTACCGAC 536
Query 578 AGTAGTTCGGTTTATCAACGGAGGAACTATATAGGGGCGATGATGAGTGGGGACAAAACT 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 AGTAGTTCGGTTTATCAACGGAGGAACTATATAGGGGCGATGATGAGTGGGGACAGAACC 596
Query 638 GGTAGACTGATGAAGTACGAC--AAC-ACGAAACAAGTGACCACTCTTCTAAGCAACTTA 694
||||||||||||||||||||| || ||||||||||||||||||||| |||||||| ||
Sbjct 597 GGTAGACTGATGAAGTACGACCCAAATACGAAACAAGTGACCACTCTTTTAAGCAACCTA 656
Query 695 GCGTTTGTAAACGGTGTCGCTTTAAGCCAAAACGGTGATTACCTTCTCGTCGTCGAGACC 754
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCGTTCCCAAACGGTGTCGTTTTAAGCCAAAACGGTGATTACCTTCTCGTCGTCGAGACC 716
Query 755 GCCATGTGTCGTAT-CTTACGTTACTGGCTCAACGAAACGTCGGTAAAGTCTCAATCTCA 813
|||| |||||| | || ||||||||||| || || |||||| | || | ||||||
Sbjct 717 GCCACGTGTCGGGTTCT-ACGTTACTGGCGCAGCGCCACGTCGACGACGTGTAAATCTCG 775
Query 814 CGATAACTACGAGATTTTCGCGGAGGGGCTCCCTGGGTTTCCAGACAACATAAAGAGAAG 873
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 776 CGAGAACTACGAGATTTTCGCGGAGGGGCTCCCCGGGTTTCCCGACAACATAAAGAGGAG 835
Query 874 TCCACGTGGCGGATTCTGGGTAGGCTTGAACACAAAACACTCAAAGCTGACAAAGTTCGC 933
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 836 TCCACGTGGCGGATTCTGGGTAGGCTTGAACACGAAACACTCAAAGCTGACAAAGTTTGC 895
Query 934 CATGTCGAACGCGTGGCTTGGACGTGCCGCTTTGGGCCTGCCGGTGGATTGGATGAAGGT 993
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 896 CATGTCCAACGCGTGGCTTGGACGCGCCGCTTTGGGCCTGCCGGTGGACTGGATGAAGGT 955
Query 994 CCATTCGGTTTGGGCCAGGTACAATGGGAACGGCATGGCCGTGAGGTTGAGCGAGGATAG 1053
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 956 CCATTCGGTTTGGGCCAAGTACAACGGGAACGGCATGGCCGTGAGGTTGAGCGAGGATAG 1015
Query 1054 TGGCGTTATATTAG-AGGTATTCGAAGGT-AAAAATGAAAATAAGTGGATATCTATAAGT 1111
|||||| || || | |||||||||| ||| ||||| |||| |||||||||||||||||||
Sbjct 1016 TGGCGTAAT-TTCGGAGGTATTCGAGGGTCAAAAAGGAAA-TAAGTGGATATCTATAAGT 1073
Query 1112 GAGGTTGAAGAAAAAGATGGAACTCTTTGGGTTGGATCGGTGAATACTCCTTTCGCTGGC 1171
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1074 GAGGTTGAAGAAAGAGATGGAACTCTTTGGGTTGGATCGGTAAATACTCCTTTCGCTGGC 1133
Query 1172 ATGTATAAAATCTAAAATTGAGTAATACAAATATGTTTTTCCAACAATATGATTCATATA 1231
||||||||||||||||||||| ||||||| || || ||||||||| || ||||||| |
Sbjct 1134 ATGTATAAAATCTAAAATTGATTAATACAGATGTGCTTTTCCAACCTTAAAATTCATAGA 1193
Query 1232 TA 1233
||
Sbjct 1194 TA 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5