BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41300.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321816 jgi|Araly1|321816|fgenesh1_pm.C_scaffold_4001873 1687 0.0
> Ahg321816 jgi|Araly1|321816|fgenesh1_pm.C_scaffold_4001873
Length=1113
Score = 1687 bits (913), Expect = 0.0
Identities = 1048/1114 (94%), Gaps = 6/1114 (1%)
Strand=Plus/Plus
Query 77 ATGCCGATCAGTCGGAAAATTCTAACGTGGGCCGCTT-TGGTGGCAATTATGGCCGTCTT 135
|||||| ||||||||||| ||| ||||||||||| || ||| |||| ||||||||||| |
Sbjct 1 ATGCCGGTCAGTCGGAAAGTTCAAACGTGGGCCG-TTGTGGCGGCAGTTATGGCCGTCCT 59
Query 136 GGTCGTCTTAGTGGGTCCATACATCATTGGACCGGAGAGTATAGAGGGCTCGAAAAACGT 195
||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 60 GGTCGTCTTTGTCGGTCCATACATCATCGGACCGGAAAGTATAGAGGGCTCGAAAAACGT 119
Query 196 CCTAACCACAGCGAGGACAATCCTCCTTCCCGTGGATGGACCGGAGAGCCTGGACT-GGA 254
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 120 CCTAACCATGGCGAGGACAATCCCCCTTCCCGTGGATGGACCGGAGAGCCTGGACTGGGA 179
Query 255 CCCAAGAGGAGAAGGCCCATACGTTGGCGTCACTGACGGTCGCATCCTCAAATGGAGCGG 314
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 CCCAAGAGGGGAAGGCCCATACGTTGGCGTAACTGACGGTCGCATCCTCAAATGGAGCGG 239
Query 315 TGAAGATCTTGGCTGGATTGAATTCGCCTACTCATCTCCCCATAGAAAAAATTGTTCGAG 374
|||||||||||||||| | |||| ||||||||||||||||| ||| | || ||||||||
Sbjct 240 TGAAGATCTTGGCTGGGTCCAATTTGCCTACTCATCTCCCCACAGAGAGAACTGTTCGAG 299
Query 375 CCATAAGGTGGAACCTGCGTGTGGAAGGCCTTTGGGACTTAGCTTCGAGAAGAAATCGGG 434
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 300 CCATAAGGTGGAACCTGCGTGTGGGAGGCCTTTGGGACTTAGCTTCGAGAAGAAAACGGG 359
Query 435 AGATTTGTATTTTTGCGACGGTTACTTAGGGGTAATGAAGGTTGGGCCTAAAGGAGGATT 494
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 360 AGATTTGTATTTTTGCGACGGTTACTTAGGGATAATGAAGGTCGGGCCTAAAGGAGGATT 419
Query 495 GGCTGAGAAAGTCGTGGACGAGGTCGAAGGTCAGAAAGTTATGTTTGCAAACCAAATGGA 554
||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 420 GGCCGAGAAGGTCGTGGACGAGGCCGAAGGCCAGAAAGTTATGTTTGCAAACCAAATGGA 479
Query 555 TATAGATGAAGAAGAGGATGCTATCTACTTCAACGATAGCAGCGATACGTACCACTTC-G 613
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 480 TATAGATGAGGAAGAGGATGCTATCTACTTCAACGATAGTAGCGATACCTACCACTTCGG 539
Query 614 --GGGACGTATTCTACGCTTTTCTGTGCGGTGAAAAGACAGGAAGAGCAATTCGATACGA 671
|||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 540 CAGGGACGTATTCTACGCGTTTCTTTGCGGCGAAAAGACGGGAAGAGCGATTCGATACGA 599
Query 672 CAAGAAGACAAAAGAGGCCAAAGTTATAATGGACCGTCTTCATTTCCCTAATGGTCTTGC 731
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAAGAAGACGAAAGAAGCCAAAGTTATAATGGACCGTCTTCATTTCCCTAATGGTCTTGC 659
Query 732 CTTAAGCATAGATGGTTCGTTCGTGCTTTCTTGTGAGGTCCCAACGCAACTTGTGCATCG 791
|||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 660 CTTAAGCAAAGATGGTTCGTTCGTGCTTTCATGTGAGGTTCCAACGCAACTTGTGCATCG 719
Query 792 ATATTGGGCCAAGGGACCCAACGCCGGGACCCGTGACATATTTGCAAAGCTCCCTGGCTA 851
|||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||
Sbjct 720 ATATTGGGCCAAGGGACCAAAAGCCGGGACTCGTGACATATTCGCAAAGCTCCCTGGCTA 779
Query 852 CGCAGATAACATCAGAAGGACCGAGACAGGGGATTTCTGGGTTGCCTTGCATTCCAAGAA 911
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGCTGATAACATCAGAAGGACCGAGACAGGGGATTTCTGGGTTGCCTTGCATTCCAAGAA 839
Query 912 AACTCCATTTTCGAGGTTATCTATGATCCACCCGTGGGTTGGGAAATTCTTCATAAAGAC 971
|||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 840 AACTCCCTTTTCAAGGTTATCTATGATCCACCCATGGGTGGGGAAATTTTTCATAAAGAC 899
Query 972 GTTGAAGATGGAGCTCTTGGTTTTTCTTTTTGAAGGAGGGAAGCCTCACGCCGTGGCTGT 1031
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 900 GTTGAAGATGGAGCTCTTGCTTTTTCTTTTCGAAGGAGGGAAGCCTCACGCCGTGGCTGT 959
Query 1032 GAAACTTTCTGGCAAGACTGGAGAGATTATGGAGATTCTTGAGGATAGTGAAGGGAAGAA 1091
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 GAAACTTTCTGGCAAGACTGGAGAGGTTATGGAGATTCTTGAGGATAGTGAAGGGAAGAA 1019
Query 1092 TATGAAGTTTATAAGTGAGGTTCAAGAGAGAGATGGTAGGCTCTGGTTTGGGTCTGTGTT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TATGAAGTTTATAAGTGAGGTTCAAGAGAGAGATGGTAGGCTCTGGTTTGGGTCTGTGTT 1079
Query 1152 TTTGCCTTCGGTTTGGGTTCTTGACCGTCAATGA 1185
| ||||||| |||||||||||||||||||| |||
Sbjct 1080 TCTGCCTTCAGTTTGGGTTCTTGACCGTCAGTGA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5