BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41310.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483202 jgi|Araly1|483202|fgenesh2_kg.4__2262__AT2G41310.1 1086 0.0
Ahg486148 jgi|Araly1|486148|fgenesh2_kg.5__2140__AT3G57040.1 488 6e-137
> Ahg483202 jgi|Araly1|483202|fgenesh2_kg.4__2262__AT2G41310.1
Length=1432
Score = 1086 bits (588), Expect = 0.0
Identities = 770/853 (90%), Gaps = 31/853 (4%)
Strand=Plus/Plus
Query 230 ttttttttAATCTCTTTCTAAAGAAGGATATCAAAAC--A-AA-ACACAAAGTTGAAAAC 285
|||||||| | |||||||||||||||| | |||||| | || | | ||||||||||||
Sbjct 163 TTTTTTTT--T-TCTTTCTAAAGAAGGAAAACAAAACAAAGAAGAAAAAAAGTTGAAAAC 219
Query 286 TTTGCATCTGGGTTTGTCTATTTTAGATTCAGATCTTAGtttttttCGATTGAATATCT- 344
|||||||||||||||||| | |||||||||||||||| | |||||||||||| |||
Sbjct 220 TTTGCATCTGGGTTTGTCGAATTTAGATTCAGATCTT-GAAAGTTTCGATTGAATCTCTG 278
Query 345 ACAATGGTAATGGAAACAGAGTCAAAGTTCCATGTTTTAGCTGTTGATGATAGTCTTTTT 404
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GCAATGGTAATGGAAACAGAGTCAAAGTTCCATGTTTTAGCTGTTGATGATAGTCTTTTT 338
Query 405 GATCGGAAAATGATTGAGAGATTGCTTCAAAAGTCTTCATGTCAAGTAACTACAGTTGAT 464
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 339 GATCGGAAAATGATAGAGAGATTGCTCCAAAAGTCTTCATGTCAAGTAACTACAGTTGAT 398
Query 465 TCAGGCTCTAAAGCTCTGGAATTTCTGGGTTTAAGAGTAGATGACAACGACCCAAATGCA 524
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 399 TCAGGCTCTAAAGCTCTTGAATTTCTGGGTTTAAGAGTAGATGACAACAACCCAAATGCG 458
Query 525 CTCTCTACATCGCCACAAATTCATCAGGAAGTTGAAATAAATCTAATAATTACAGATTAC 584
||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 459 CTCTCTACATCACCCCAAATTCATCAGGAAGTTGAAATAAATCTTATAATAACAGATTAC 518
Query 585 TGTATGCCTGGCATGACTGGTTATGATTTGCTCAAGAAAGTTAAGGAATCAGCGGCGTTT 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 519 TGTATGCCTGGCATGACTGGTTATGATTTGCTCAAGAAAGTTAAGGAATCAGCGGCATTA 578
Query 645 AGAAGTATACCTGTAGTTATAATGTCATCTGAGAACGTTCCTGCAAGAATCTCCAGATGT 704
||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 579 AGAAGCATACCTGTCGTTATAATGTCATCTGAGAACGTTCCAGCTAGAATCTCCAGATGT 638
Query 705 TTGGAAGAAGGAGCTGAAGAGTTTTTCTTGAAACCAGTGAAGTTAGCTGATCTTACCAAG 764
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 639 TTGGAAGAAGGAGCTGAAGAGTTTTTCTTGAAACCAGTAAAGTTAGCTGATCTTACCAAG 698
Query 765 TTGAAACCTCATATGATGAAAACGAAGTTGAAGAAAGAAAGTGAGAAACCAGTTGCCATA 824
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 699 TTGAAACCTCATATGATGAAAACCAAATTGAAGAAAGAAAGTGAGAAACCAGTTGCCATA 758
Query 825 GAAGAGATTGTGGTGTCTAAACCGGAGATagaagaagaagaagaagaGTCATCAGTGATT 884
||||||||||| || |||||||||||||||||| || | ||||||| ||||||||||||
Sbjct 759 GAAGAGATTGTAGTTTCTAAACCGGAGATAGAA-AA-A-GAAGAAGCTTCATCAGTGATT 815
Query 885 GAAATCTTGCCTCTCCACCAAGAAATTGAATCCGAACAACTTGAACCAATGTTGAGTAGT 944
|| ||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 816 GAGATCTTGCCTCTCCACCAAGAA-------C--------TTGAACCAATGTTGAGTAGT 860
Query 945 AATAAGAGAAAAGCAATGGAAGAAGTGGTTTCTACTGATCGATCACGTCCTAAATACAAT 1004
|||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 861 AATAAGCGGAAAGCAATGGAAGAAGTGATATCTACTGATCGATCACGTCCTAAATACAAT 920
Query 1005 GATATCACAACCTCGGTCTGA-AGGAGGACTAACGCAACCCGAGAAGCCA-CTACAAGAC 1062
||| |||||||||| |||||| | | ||| |||||| |||| | || ||| | |||
Sbjct 921 GATTTCACAACCTCAGTCTGACAA-ACTACTGACGCAAATCGAGCA-CCTGCTAGACGAC 978
Query 1063 CTATATGGAGAAT 1075
| |||||||||||
Sbjct 979 CAATATGGAGAAT 991
Score = 507 bits (274), Expect = 2e-142
Identities = 394/449 (88%), Gaps = 20/449 (4%)
Strand=Plus/Plus
Query 1229 TTGAATATGAAGCAAACAACAACGGAC-TGCTAGGAGTAATACCGCAGC-A-A----CAT 1281
|||||||||| |||||||||||| | | ||| ||||||||||||||| | | | |||
Sbjct 991 TTGAATATGAGGCAAACAACAAC-GCCTTGCAAGGAGTAATACCGCAACAACAGCGTCAT 1049
Query 1282 CGTTATCATCAGGAAAAAGAGACAATGCAGACACAAGGAGATCCACTAAATCGAATACCT 1341
| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 1050 CCTTATCATCAGGAACAAGAGACAAACCAGACACAAGGAGATCCACTGAATCGAATACTT 1109
Query 1342 ATTCAATCAGAAGCTTCAAACCATTCAGATAGTGGTGATAGCACACTAACAATGGCTCAA 1401
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1110 GTTCAATTAGAAGCTTTAAACCATTCAGATAGTGGTGATAGCACATTAACAATGGCTCAG 1169
Query 1402 AACCAGGATGGTCTCGGACACAGTAGTTG-TTT-T-ATTCTCTGTCAATTTACTTCTCTC 1458
|||||| |||||||| | | |||||| | ||| | ||| ||||||||||||||||||||
Sbjct 1170 AACCAGCATGGTCTCC-A-A-AGTAGTGGATTTATTATTATCTGTCAATTTACTTCTCTC 1226
Query 1459 CCCTAGATTAGCTTTCTTCGtttttttcttttatttttCATGCTGT--TAAACCCACAAG 1516
| |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||
Sbjct 1227 CTCTAGATTAGCTTTCTTAGTTTTTTT-TTTC-TTTTTCATGGGGTGATAAACCCACAAG 1284
Query 1517 ATTTTTGGGAAGTTTCTTGCTACTAGCTTAAGAATCCAAAACTATTGCAAAGATTGAAGC 1576
|||||| | |||||||||||||||||||||| |||||||||||||||||||||| | |
Sbjct 1285 ATTTTTAGAAAGTTTCTTGCTACTAGCTTAATAATCCAAAACTATTGCAAAGATCGGATT 1344
Query 1577 TTTCGAGAATTAGTAAT-GAATCTTATCAAAACTAACAGCTACATTTACTAGCTTAAGAA 1635
||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1345 TTTCGAGAATTAG-AATTGAATCTTATCAAAACTAACAACTACATTCACTAGCTTAAGAA 1403
Query 1636 CCATTAAACGAATTGTAAAATTCTCTCAT 1664
|||| ||||||||| ||||||||||||||
Sbjct 1404 CCATCAAACGAATTATAAAATTCTCTCAT 1432
> Ahg486148 jgi|Araly1|486148|fgenesh2_kg.5__2140__AT3G57040.1
Length=1307
Score = 488 bits (264), Expect = 6e-137
Identities = 467/560 (83%), Gaps = 33/560 (6%)
Strand=Plus/Plus
Query 264 AACAAAACACAAAGTTGAAAACTTTGCATCTGGGTTTGTCTATTTTAGA-TTCA-GATC- 320
||||||| | ||||| ||| ||||| |||||||||| || |||| ||| || | ||
Sbjct 330 AACAAAAAAAAAAGTCGAAGACTTTACATCTGGGTTCATCGATTTGAGATTTGATCTTCT 389
Query 321 TT-AG--tt-tttttCGA--TTGAA-TATCTACAAT-GGTAATGGAAACAGAGTCAAAGT 372
|| || || |||||| | || || | | | |||| ||| |||| | |||| || |||
Sbjct 390 TTGAGATTTCTTTTTCTATCTTCAAGT-TTTGCAATGGGT-ATGGCAGCAGAATCGCAGT 447
Query 373 TCCATGTTTTAGCTGTTGATGATAGTCTT-TTTGATCGGAAA-ATGATTGAGAGATTGCT 430
| |||||||||||||||||||||||| || |||||||||||| || || |||||||||||
Sbjct 448 TTCATGTTTTAGCTGTTGATGATAGT-TTATTTGATCGGAAATAT-ATAGAGAGATTGCT 505
Query 431 TCAAAAGTCTTCATGTCAAGTAACTACAGTTGATTCAGGCTCTAAA-GCTCTGGAATTTC 489
||| |||||||| |||||||||||||| |||||||| || || ||| ||| |||| ||||
Sbjct 506 TCAGAAGTCTTCGTGTCAAGTAACTACTGTTGATTCTGGGTC-AAAGGCTTTGGAGTTTC 564
Query 490 TGGGTTTAAG---A-GTA--GATGA-CAACGACCCAAATGCACTCTCTACA-TCGCCACA 541
|||||||||| | ||| ||| | |||||||||||||| || |||| | || ||
Sbjct 565 TGGGTTTAAGACAAGGTATTGAT-AGTAACGACCCAAATGCGCTTTCTA-AGTCTCCGGT 622
Query 542 AATTCATCAGGAAGTTGAAATAAATCTAATAATTACAGATTACTGTATGCCTGGCATGAC 601
| ||| |||| ||||||| | ||||| |||||||||||||| ||||||||||| |||||
Sbjct 623 TACTCAACAGGTAGTTGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGTATGAC 682
Query 602 TGGTTATGATTTGCTCAAGAAAGTTAAGGAATCAGCGGCGTTTAGAAG-TATACCTGTAG 660
|||||||||||||||||||||||| ||||||||| | || ||||| || ||||| ||||
Sbjct 683 TGGTTATGATTTGCTCAAGAAAGTCAAGGAATCATCAGCTTTTAG-AGACATACCAGTAG 741
Query 661 TTATAATGTCATCTGAGAACGTTCCTGCAAGAATCTCCAGATGTTTGGAAGAAGGAGCTG 720
|||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 742 TTATCATGTCCTCTGAGAACGTTCCTGCAAGAATCAGCAGATGTTTAGAAGAAGGAGCTG 801
Query 721 AAGAGTTTTTCTTGAAACCAGTGAAG-TTAGCTGATCTTACCAAGTTGAAACCTCATATG 779
|||||||||||||||||||||| ||| || |||||||||| |||||||||||||||||||
Sbjct 802 AAGAGTTTTTCTTGAAACCAGT-AAGATTGGCTGATCTTAACAAGTTGAAACCTCATATG 860
Query 780 ATGAAAACGAAGTTGAAGAA 799
|||||||| |||||||||||
Sbjct 861 ATGAAAACAAAGTTGAAGAA 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5