BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G41312.1

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934955 jgi|Araly1|934955|scaffold_402943.1                        231    3e-60


> Ahg934955 jgi|Araly1|934955|scaffold_402943.1
Length=246

 Score =  231 bits (125),  Expect = 3e-60
 Identities = 147/157 (94%), Gaps = 3/157 (2%)
 Strand=Plus/Plus

Query  46   GAGAGAGTGAGAGATTATGGCGATGCCTTTGGAAATGGCGATGCTTTTGACGAAAACGGT  105
            |||||||  |||||| |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct  5    GAGAGAGACAGAGATAATGGCGATGCCTTTGGAAATGGCGATGCTTCTGACGAATACGGT  64

Query  106  TTGGTTTGCTCTGAGCGGCTGGATTTTAACATGTTTGTCCATCGCCGACGAGATTGCTGG  165
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  65   GTGGTTTGCTCTGAGCGGCTGGATTTTAACATGTTTGTCTATCGCCGACGAGATTGCTGG  124

Query  166  TTCACTCAGAAACCGAGAAGTTGGTCCTCCTTTACAT  202
            ||||||||||||||||||||||| |  ||||||||||
Sbjct  125  TTCACTCAGAAACCGAGAAGTTG-T--TCCTTTACAT  158



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22073168943


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5