BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41330.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934956 jgi|Araly1|934956|scaffold_402944.1 1504 0.0
Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1 353 2e-96
> Ahg934956 jgi|Araly1|934956|scaffold_402944.1
Length=1267
Score = 1504 bits (814), Expect = 0.0
Identities = 1133/1276 (89%), Gaps = 66/1276 (5%)
Strand=Plus/Plus
Query 101 TCTGTTCTGCTTCG-AAATTATGGGTTCCTCTGTTTCTAAAACCGCTTCCTCTGCTTCTG 159
|||||||||||||| |||||||||||||||||||||||||||||| || | | | |
Sbjct 1 TCTGTTCTGCTTCGAAAATTATGGGTTCCTCTGTTTCTAAAACCG----CT-T-C-T-T- 51
Query 160 CTTCTTCTATAACATCGATTTTGAATTCACCTCCGGAGACGGAATTCAACATCCCTTCTT 219
| ||||| | ||| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct 52 CATCTTC--T----TCG---TTGAATTTACCTCCGGAGACGGAATTCAACATCCCGTCTT 102
Query 220 CATCGGTACCTAAAGCTTTCACATTTCCGATGCCGTCGATTCATCATCCACCTGCTAAAA 279
| || || ||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 103 CGTCTGTCCCTAAGGCTTTCACATTTCCGATGCCGTCGATTCATCATCCACCGGTTAAAA 162
Query 280 AAGGCGACACACACCACTTTGTCTCTCTTACATCGACCACTTACGGTTCTCTTGT--TC- 336
|||||||||| |||||||| |||||||||||||||||||||||||| |||||| | ||
Sbjct 163 AAGGCGACACGCACCACTTCGTCTCTCTTACATCGACCACTTACGGCTCTCTTCTCCTCG 222
Query 337 -TCGA-----CGACAGACAAACATTGCCTCACATCTCCGTTTCCGGGAAGAGTAACAAGA 390
| || ||||||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct 223 ATGGAGCTTCCGACAGACAAACATTGCCTCATATCTCCGTTACCGGGAAGAATAACAAGA 282
Query 391 AGATGCCTGAAACAGAGGAGGCTCGCGACTCGTTCTCTCCTGACTCAGTGATCAACACAT 450
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 283 AGATGCCTGAAACAGAGGAGGCACGCGAGTCGTTGTCTCCTGACTCAGTGATCAACACAT 342
Query 451 GGGAGCTCATGAACGACCTCGACGACGAATTCGATTCCGCGAATTCCGATACAAGTAAGA 510
||||||||||||||| |||||||||||| ||||| || | |||||||||||||||||||
Sbjct 343 GGGAGCTCATGAACGGCCTCGACGACGATTTCGACTCTGAGAATTCCGATACAAGTAAGC 402
Query 511 GTAATTCCGTCGTAAATTTGGATTCCTTTTCTAAACCCATCACGAATCGAGACGTGGTTA 570
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 403 GTAATTCCGTCGTAAATTTGGATTGTTTTTCTAAACCCATCAAGAATCGAGACGTGGTTA 462
Query 571 TTAATGGGTCTGCG-T---A-T-G--G-ATCTTACGAAGATGAGGAAGATTGGAGATTAT 621
||||||||||| || | | | | | ||||||||||| |||||||||||||||||||
Sbjct 463 TTAATGGGTCTTCGTTGAAATTGGACGAATCTTACGAAGCTGAGGAAGATTGGAGATTAC 522
Query 622 TGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTG 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTG 582
Query 682 ATTTAGATCCTAACATTATCTCATCTTACAA-AAGAGCACTGTCCTCCAAACAGCTAGGC 740
||||||||||||||||||||||||||||||| || |||| |||| || || || ||| ||
Sbjct 583 ATTTAGATCCTAACATTATCTCATCTTACAAGAA-AGCATTGTCTTCTAAGCAACTAAGC 641
Query 741 AAGAACAGTAGCAATGGCCACTCAAA--TC-AT---TCGGT-TT--------T--AGTC- 782
|| |||| ||| ||||| ||| ||| | || || | || | | ||
Sbjct 642 AAAAACACTAGTAATGGTCAC-AAAAGCGCGATAGCTCTCTCTTGCAACCACTCAAATCA 700
Query 783 A--G--TTTACCAGAATATGTATCTTCTAGTCCATTGAGTTCTCAGACTTCGGAAAAAGA 838
| | ||||||||||| |||||| || | |||| ||| ||||||||||| || ||||
Sbjct 701 ATCGACTTTACCAGAATCTGTATCCTCGACTCCACTGACTTCTCAGACTTTGG---AAGA 757
Query 839 CCAAGAGAAACCAAGATTGCTTGAAAAAGAAGATAACGAGAACAAGATAGTAGTATACTT 898
||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 758 CCAAGAGAAACCAAGATTGCTTGAAAAAGAAGATAACAAGAACAAGATAGTATTGTACTT 817
Query 899 CACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGTTGTTGCGTTAGAGCGATATT 958
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 818 CACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGTTGTTGCGTTAGAACGATATT 877
Query 959 GAGAGGGTTTCAGGTTGCGGTAGAGGAGCGTGACATCTCAATGGACTCCAAATACAGGAA 1018
||||||||||||||||||||||||||| || |||||||||||||| |||||||| || ||
Sbjct 878 GAGAGGGTTTCAGGTTGCGGTAGAGGAACGCGACATCTCAATGGATTCCAAATATAGAAA 937
Query 1019 AGAGCTTCAGAATGCACTCGGCGAAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATAAG 1078
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 938 AGAGCTTCAGAATGCACTCGGTGAAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATAAG 997
Query 1079 AGGCGTCCGCATTGGTGGAATTGAGGAGATCAAGATACTCAACGATGGAGGTGAACTGGC 1138
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 998 AGGTGTCCGCATTGGTGGAATTGAGGAGATCAAGATACTCAACGATGGAGGCGAACTGGC 1057
Query 1139 AGAGATGTTAAAAGATTTTCCTGCTTGCGAATCCATTGGAGCCTGCGATAGCTGCGGAGA 1198
|||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||| ||
Sbjct 1058 AGAGATGTTAAAAGATTTCCCTGCTTGTGAATCCGTGGGAGCCTGCGAAAGCTGCGGGGA 1117
Query 1199 TGCAAGGTTTGTGCCGTGTACTAATTGTGGCGGTAGTACTAAAGTGTTTGAGGAACAAGA 1258
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1118 TGCAAGGTTTGTGCCGTGTACTAATTGTGGTGGTAGTACTAAAGTGTTTGAGGAAAAAGA 1177
Query 1259 AGATGGGTTTAAGAGATGCAATGGATGCAATGAGAATGGATTGGTACGTTGTAACAAGTG 1318
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1178 AGATGGGTTTAAGAGATGCAATGAATGCAATGAGAATGGATTGGTACGTTGTAACAGGTG 1237
Query 1319 TTGTCTTTAG-TAATT 1333
||||| |||| |||||
Sbjct 1238 TTGTCATTAGCTAATT 1253
> Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1
Length=1723
Score = 353 bits (191), Expect = 2e-96
Identities = 372/457 (81%), Gaps = 21/457 (5%)
Strand=Plus/Plus
Query 880 ACAAGATAGTAG-TATACTTCACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGT 938
||||||| || | | |||||||| | |||| |||||||||||||||| || || |||||
Sbjct 1039 ACAAGATTGT-GCTCTACTTCACAACCCTCCGAGGAATTCGAAAGACATACGAGGATTGC 1097
Query 939 TGTTGCGTTAGAGCGATATTGAGAGGGTTTCAGGTTGCGGTAGAGGAGCGTGACATCTCA 998
|||||||||||||||||| |||||||| |||| || ||||||| || |||||||||||
Sbjct 1098 TGTTGCGTTAGAGCGATACTGAGAGGGCTTCAAGTCACGGTAGACGAACGTGACATCTCT 1157
Query 999 ATGGACTCCAAATACAGGAAAGAGCTTCAGAA-TGCACTCG--G-CGAAGAGAAACCGGT 1054
||||| || |||||||||||||||||||| || || || | | || ||||||||||||
Sbjct 1158 ATGGATTCTAAATACAGGAAAGAGCTTCA-AAGTGTGCTTGTTGCCGCAGAGAAACCGGT 1216
Query 1055 TTGTTTGCCTCAGGTGTTTATAAGAGG--CGTCCGCATTGGTGGAATTGAGGAGATCAAG 1112
||||||||||||||||||||| ||||| | || ||||||||| | |||||||| | |
Sbjct 1217 TTGTTTGCCTCAGGTGTTTATCAGAGGAAC-TCA-CATTGGTGGCGTGGAGGAGATTATG 1274
Query 1113 -ATACTCAACGATGGAGGTGAACTGGCAGAGATGTTAAAAGATTTTCCTGCTTGCGAATC 1171
| || |||||||| |||||| | ||||||||||| |||||||| |||||||| ||| |
Sbjct 1275 CAG-CTAAACGATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAA-C 1332
Query 1172 -CATTGGAGCC-TGC-GATAGCTGCGGAGATGCAAGGTTTGTGCCGTGTACTAATTGTGG 1228
| |||| | | ||| | ||||| || ||||||||||||||||| |||||||| || |
Sbjct 1333 GC-TTGGGGACATGCCGG-AGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGA 1390
Query 1229 CGGTAGTACTAAAGTGTTTGAGGAACAAGAAGATGGGTTTAAGAGATG-CAATGGATGCA 1287
||| || || ||||||||||| |||||||| || |||| ||| |||| | | |||||
Sbjct 1391 CGGAAGCACCAAAGTGTTTGAAGAACAAGACGAACGGTTCAAGCGATGTCC-TAAATGCA 1449
Query 1288 ATGAGAATGGATTGGTACGTTGTAACAAGTGTTGTCT 1324
|||||||||||||||| |||||| | |||||||||
Sbjct 1450 ATGAGAATGGATTGGTGCGTTGTCGCGTGTGTTGTCT 1486
Score = 132 bits (71), Expect = 8e-30
Identities = 98/111 (88%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 621 TTGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCT 680
||| ||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 771 TTGACTTATAAACCTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTCT 830
Query 681 GATTTAGATCCTAACATTATCTCATCTTACAA-AAGAGCACTGTCCTCCAA 730
||||||||||| | |||| ||||||||||||| || ||| |||| |||||
Sbjct 831 GATTTAGATCCCAGCATTGTCTCATCTTACAAGAA-AGCTTTGTCTTCCAA 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5