BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G41330.1

Length=1431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934956 jgi|Araly1|934956|scaffold_402944.1                       1504    0.0  
  Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1         353    2e-96


> Ahg934956 jgi|Araly1|934956|scaffold_402944.1
Length=1267

 Score = 1504 bits (814),  Expect = 0.0
 Identities = 1133/1276 (89%), Gaps = 66/1276 (5%)
 Strand=Plus/Plus

Query  101   TCTGTTCTGCTTCG-AAATTATGGGTTCCTCTGTTTCTAAAACCGCTTCCTCTGCTTCTG  159
             |||||||||||||| ||||||||||||||||||||||||||||||    || | | | | 
Sbjct  1     TCTGTTCTGCTTCGAAAATTATGGGTTCCTCTGTTTCTAAAACCG----CT-T-C-T-T-  51

Query  160   CTTCTTCTATAACATCGATTTTGAATTCACCTCCGGAGACGGAATTCAACATCCCTTCTT  219
             | |||||  |    |||   ||||||| ||||||||||||||||||||||||||| ||||
Sbjct  52    CATCTTC--T----TCG---TTGAATTTACCTCCGGAGACGGAATTCAACATCCCGTCTT  102

Query  220   CATCGGTACCTAAAGCTTTCACATTTCCGATGCCGTCGATTCATCATCCACCTGCTAAAA  279
             | || || ||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct  103   CGTCTGTCCCTAAGGCTTTCACATTTCCGATGCCGTCGATTCATCATCCACCGGTTAAAA  162

Query  280   AAGGCGACACACACCACTTTGTCTCTCTTACATCGACCACTTACGGTTCTCTTGT--TC-  336
             |||||||||| |||||||| |||||||||||||||||||||||||| |||||| |  || 
Sbjct  163   AAGGCGACACGCACCACTTCGTCTCTCTTACATCGACCACTTACGGCTCTCTTCTCCTCG  222

Query  337   -TCGA-----CGACAGACAAACATTGCCTCACATCTCCGTTTCCGGGAAGAGTAACAAGA  390
              | ||     ||||||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct  223   ATGGAGCTTCCGACAGACAAACATTGCCTCATATCTCCGTTACCGGGAAGAATAACAAGA  282

Query  391   AGATGCCTGAAACAGAGGAGGCTCGCGACTCGTTCTCTCCTGACTCAGTGATCAACACAT  450
             |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct  283   AGATGCCTGAAACAGAGGAGGCACGCGAGTCGTTGTCTCCTGACTCAGTGATCAACACAT  342

Query  451   GGGAGCTCATGAACGACCTCGACGACGAATTCGATTCCGCGAATTCCGATACAAGTAAGA  510
             ||||||||||||||| |||||||||||| ||||| || | ||||||||||||||||||| 
Sbjct  343   GGGAGCTCATGAACGGCCTCGACGACGATTTCGACTCTGAGAATTCCGATACAAGTAAGC  402

Query  511   GTAATTCCGTCGTAAATTTGGATTCCTTTTCTAAACCCATCACGAATCGAGACGTGGTTA  570
             ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||
Sbjct  403   GTAATTCCGTCGTAAATTTGGATTGTTTTTCTAAACCCATCAAGAATCGAGACGTGGTTA  462

Query  571   TTAATGGGTCTGCG-T---A-T-G--G-ATCTTACGAAGATGAGGAAGATTGGAGATTAT  621
             ||||||||||| || |   | | |  | ||||||||||| ||||||||||||||||||| 
Sbjct  463   TTAATGGGTCTTCGTTGAAATTGGACGAATCTTACGAAGCTGAGGAAGATTGGAGATTAC  522

Query  622   TGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTG  681
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  523   TGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTG  582

Query  682   ATTTAGATCCTAACATTATCTCATCTTACAA-AAGAGCACTGTCCTCCAAACAGCTAGGC  740
             ||||||||||||||||||||||||||||||| || |||| |||| || || || ||| ||
Sbjct  583   ATTTAGATCCTAACATTATCTCATCTTACAAGAA-AGCATTGTCTTCTAAGCAACTAAGC  641

Query  741   AAGAACAGTAGCAATGGCCACTCAAA--TC-AT---TCGGT-TT--------T--AGTC-  782
             || |||| ||| ||||| |||  |||   | ||   ||  | ||        |  | || 
Sbjct  642   AAAAACACTAGTAATGGTCAC-AAAAGCGCGATAGCTCTCTCTTGCAACCACTCAAATCA  700

Query  783   A--G--TTTACCAGAATATGTATCTTCTAGTCCATTGAGTTCTCAGACTTCGGAAAAAGA  838
             |  |  ||||||||||| |||||| || | |||| ||| ||||||||||| ||   ||||
Sbjct  701   ATCGACTTTACCAGAATCTGTATCCTCGACTCCACTGACTTCTCAGACTTTGG---AAGA  757

Query  839   CCAAGAGAAACCAAGATTGCTTGAAAAAGAAGATAACGAGAACAAGATAGTAGTATACTT  898
             ||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct  758   CCAAGAGAAACCAAGATTGCTTGAAAAAGAAGATAACAAGAACAAGATAGTATTGTACTT  817

Query  899   CACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGTTGTTGCGTTAGAGCGATATT  958
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  818   CACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGTTGTTGCGTTAGAACGATATT  877

Query  959   GAGAGGGTTTCAGGTTGCGGTAGAGGAGCGTGACATCTCAATGGACTCCAAATACAGGAA  1018
             ||||||||||||||||||||||||||| || |||||||||||||| |||||||| || ||
Sbjct  878   GAGAGGGTTTCAGGTTGCGGTAGAGGAACGCGACATCTCAATGGATTCCAAATATAGAAA  937

Query  1019  AGAGCTTCAGAATGCACTCGGCGAAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATAAG  1078
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  938   AGAGCTTCAGAATGCACTCGGTGAAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATAAG  997

Query  1079  AGGCGTCCGCATTGGTGGAATTGAGGAGATCAAGATACTCAACGATGGAGGTGAACTGGC  1138
             ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  998   AGGTGTCCGCATTGGTGGAATTGAGGAGATCAAGATACTCAACGATGGAGGCGAACTGGC  1057

Query  1139  AGAGATGTTAAAAGATTTTCCTGCTTGCGAATCCATTGGAGCCTGCGATAGCTGCGGAGA  1198
             |||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||| ||
Sbjct  1058  AGAGATGTTAAAAGATTTCCCTGCTTGTGAATCCGTGGGAGCCTGCGAAAGCTGCGGGGA  1117

Query  1199  TGCAAGGTTTGTGCCGTGTACTAATTGTGGCGGTAGTACTAAAGTGTTTGAGGAACAAGA  1258
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct  1118  TGCAAGGTTTGTGCCGTGTACTAATTGTGGTGGTAGTACTAAAGTGTTTGAGGAAAAAGA  1177

Query  1259  AGATGGGTTTAAGAGATGCAATGGATGCAATGAGAATGGATTGGTACGTTGTAACAAGTG  1318
             ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  1178  AGATGGGTTTAAGAGATGCAATGAATGCAATGAGAATGGATTGGTACGTTGTAACAGGTG  1237

Query  1319  TTGTCTTTAG-TAATT  1333
             ||||| |||| |||||
Sbjct  1238  TTGTCATTAGCTAATT  1253


> Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1
Length=1723

 Score =  353 bits (191),  Expect = 2e-96
 Identities = 372/457 (81%), Gaps = 21/457 (5%)
 Strand=Plus/Plus

Query  880   ACAAGATAGTAG-TATACTTCACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGT  938
             ||||||| || | | |||||||| | |||| |||||||||||||||| || || ||||| 
Sbjct  1039  ACAAGATTGT-GCTCTACTTCACAACCCTCCGAGGAATTCGAAAGACATACGAGGATTGC  1097

Query  939   TGTTGCGTTAGAGCGATATTGAGAGGGTTTCAGGTTGCGGTAGAGGAGCGTGACATCTCA  998
             |||||||||||||||||| |||||||| |||| ||  ||||||| || ||||||||||| 
Sbjct  1098  TGTTGCGTTAGAGCGATACTGAGAGGGCTTCAAGTCACGGTAGACGAACGTGACATCTCT  1157

Query  999   ATGGACTCCAAATACAGGAAAGAGCTTCAGAA-TGCACTCG--G-CGAAGAGAAACCGGT  1054
             ||||| || |||||||||||||||||||| || ||  || |  | || ||||||||||||
Sbjct  1158  ATGGATTCTAAATACAGGAAAGAGCTTCA-AAGTGTGCTTGTTGCCGCAGAGAAACCGGT  1216

Query  1055  TTGTTTGCCTCAGGTGTTTATAAGAGG--CGTCCGCATTGGTGGAATTGAGGAGATCAAG  1112
             ||||||||||||||||||||| |||||  | ||  |||||||||  | |||||||| | |
Sbjct  1217  TTGTTTGCCTCAGGTGTTTATCAGAGGAAC-TCA-CATTGGTGGCGTGGAGGAGATTATG  1274

Query  1113  -ATACTCAACGATGGAGGTGAACTGGCAGAGATGTTAAAAGATTTTCCTGCTTGCGAATC  1171
              |  || |||||||| |||||| | ||||||||||| |||||||| |||||||| ||| |
Sbjct  1275  CAG-CTAAACGATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAA-C  1332

Query  1172  -CATTGGAGCC-TGC-GATAGCTGCGGAGATGCAAGGTTTGTGCCGTGTACTAATTGTGG  1228
              | |||| | | ||| |  ||||| || ||||||||||||||||| |||||||| || | 
Sbjct  1333  GC-TTGGGGACATGCCGG-AGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGA  1390

Query  1229  CGGTAGTACTAAAGTGTTTGAGGAACAAGAAGATGGGTTTAAGAGATG-CAATGGATGCA  1287
             ||| || || ||||||||||| |||||||| ||  |||| ||| |||| |  |  |||||
Sbjct  1391  CGGAAGCACCAAAGTGTTTGAAGAACAAGACGAACGGTTCAAGCGATGTCC-TAAATGCA  1449

Query  1288  ATGAGAATGGATTGGTACGTTGTAACAAGTGTTGTCT  1324
             |||||||||||||||| ||||||  |  |||||||||
Sbjct  1450  ATGAGAATGGATTGGTGCGTTGTCGCGTGTGTTGTCT  1486


 Score =  132 bits (71),  Expect = 8e-30
 Identities = 98/111 (88%), Gaps = 2/111 (2%)
 Strand=Plus/Plus

Query  621  TTGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCT  680
            ||| ||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct  771  TTGACTTATAAACCTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTCT  830

Query  681  GATTTAGATCCTAACATTATCTCATCTTACAA-AAGAGCACTGTCCTCCAA  730
            ||||||||||| | |||| ||||||||||||| || |||  |||| |||||
Sbjct  831  GATTTAGATCCCAGCATTGTCTCATCTTACAAGAA-AGCTTTGTCTTCCAA  880



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53516794225


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5