BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41330.1 Length=1431 Score E Sequences producing significant alignments: (Bits) Value Ahg934956 jgi|Araly1|934956|scaffold_402944.1 1504 0.0 Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1 353 2e-96 > Ahg934956 jgi|Araly1|934956|scaffold_402944.1 Length=1267 Score = 1504 bits (814), Expect = 0.0 Identities = 1133/1276 (89%), Gaps = 66/1276 (5%) Strand=Plus/Plus Query 101 TCTGTTCTGCTTCG-AAATTATGGGTTCCTCTGTTTCTAAAACCGCTTCCTCTGCTTCTG 159 |||||||||||||| |||||||||||||||||||||||||||||| || | | | | Sbjct 1 TCTGTTCTGCTTCGAAAATTATGGGTTCCTCTGTTTCTAAAACCG----CT-T-C-T-T- 51 Query 160 CTTCTTCTATAACATCGATTTTGAATTCACCTCCGGAGACGGAATTCAACATCCCTTCTT 219 | ||||| | ||| ||||||| ||||||||||||||||||||||||||| |||| Sbjct 52 CATCTTC--T----TCG---TTGAATTTACCTCCGGAGACGGAATTCAACATCCCGTCTT 102 Query 220 CATCGGTACCTAAAGCTTTCACATTTCCGATGCCGTCGATTCATCATCCACCTGCTAAAA 279 | || || ||||| |||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 103 CGTCTGTCCCTAAGGCTTTCACATTTCCGATGCCGTCGATTCATCATCCACCGGTTAAAA 162 Query 280 AAGGCGACACACACCACTTTGTCTCTCTTACATCGACCACTTACGGTTCTCTTGT--TC- 336 |||||||||| |||||||| |||||||||||||||||||||||||| |||||| | || Sbjct 163 AAGGCGACACGCACCACTTCGTCTCTCTTACATCGACCACTTACGGCTCTCTTCTCCTCG 222 Query 337 -TCGA-----CGACAGACAAACATTGCCTCACATCTCCGTTTCCGGGAAGAGTAACAAGA 390 | || ||||||||||||||||||||| ||||||||| ||||||||| |||||||| Sbjct 223 ATGGAGCTTCCGACAGACAAACATTGCCTCATATCTCCGTTACCGGGAAGAATAACAAGA 282 Query 391 AGATGCCTGAAACAGAGGAGGCTCGCGACTCGTTCTCTCCTGACTCAGTGATCAACACAT 450 |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct 283 AGATGCCTGAAACAGAGGAGGCACGCGAGTCGTTGTCTCCTGACTCAGTGATCAACACAT 342 Query 451 GGGAGCTCATGAACGACCTCGACGACGAATTCGATTCCGCGAATTCCGATACAAGTAAGA 510 ||||||||||||||| |||||||||||| ||||| || | ||||||||||||||||||| Sbjct 343 GGGAGCTCATGAACGGCCTCGACGACGATTTCGACTCTGAGAATTCCGATACAAGTAAGC 402 Query 511 GTAATTCCGTCGTAAATTTGGATTCCTTTTCTAAACCCATCACGAATCGAGACGTGGTTA 570 |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 403 GTAATTCCGTCGTAAATTTGGATTGTTTTTCTAAACCCATCAAGAATCGAGACGTGGTTA 462 Query 571 TTAATGGGTCTGCG-T---A-T-G--G-ATCTTACGAAGATGAGGAAGATTGGAGATTAT 621 ||||||||||| || | | | | | ||||||||||| ||||||||||||||||||| Sbjct 463 TTAATGGGTCTTCGTTGAAATTGGACGAATCTTACGAAGCTGAGGAAGATTGGAGATTAC 522 Query 622 TGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTG 681 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 TGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTG 582 Query 682 ATTTAGATCCTAACATTATCTCATCTTACAA-AAGAGCACTGTCCTCCAAACAGCTAGGC 740 ||||||||||||||||||||||||||||||| || |||| |||| || || || ||| || Sbjct 583 ATTTAGATCCTAACATTATCTCATCTTACAAGAA-AGCATTGTCTTCTAAGCAACTAAGC 641 Query 741 AAGAACAGTAGCAATGGCCACTCAAA--TC-AT---TCGGT-TT--------T--AGTC- 782 || |||| ||| ||||| ||| ||| | || || | || | | || Sbjct 642 AAAAACACTAGTAATGGTCAC-AAAAGCGCGATAGCTCTCTCTTGCAACCACTCAAATCA 700 Query 783 A--G--TTTACCAGAATATGTATCTTCTAGTCCATTGAGTTCTCAGACTTCGGAAAAAGA 838 | | ||||||||||| |||||| || | |||| ||| ||||||||||| || |||| Sbjct 701 ATCGACTTTACCAGAATCTGTATCCTCGACTCCACTGACTTCTCAGACTTTGG---AAGA 757 Query 839 CCAAGAGAAACCAAGATTGCTTGAAAAAGAAGATAACGAGAACAAGATAGTAGTATACTT 898 ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| Sbjct 758 CCAAGAGAAACCAAGATTGCTTGAAAAAGAAGATAACAAGAACAAGATAGTATTGTACTT 817 Query 899 CACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGTTGTTGCGTTAGAGCGATATT 958 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 818 CACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGTTGTTGCGTTAGAACGATATT 877 Query 959 GAGAGGGTTTCAGGTTGCGGTAGAGGAGCGTGACATCTCAATGGACTCCAAATACAGGAA 1018 ||||||||||||||||||||||||||| || |||||||||||||| |||||||| || || Sbjct 878 GAGAGGGTTTCAGGTTGCGGTAGAGGAACGCGACATCTCAATGGATTCCAAATATAGAAA 937 Query 1019 AGAGCTTCAGAATGCACTCGGCGAAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATAAG 1078 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 938 AGAGCTTCAGAATGCACTCGGTGAAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATAAG 997 Query 1079 AGGCGTCCGCATTGGTGGAATTGAGGAGATCAAGATACTCAACGATGGAGGTGAACTGGC 1138 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 998 AGGTGTCCGCATTGGTGGAATTGAGGAGATCAAGATACTCAACGATGGAGGCGAACTGGC 1057 Query 1139 AGAGATGTTAAAAGATTTTCCTGCTTGCGAATCCATTGGAGCCTGCGATAGCTGCGGAGA 1198 |||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||| || Sbjct 1058 AGAGATGTTAAAAGATTTCCCTGCTTGTGAATCCGTGGGAGCCTGCGAAAGCTGCGGGGA 1117 Query 1199 TGCAAGGTTTGTGCCGTGTACTAATTGTGGCGGTAGTACTAAAGTGTTTGAGGAACAAGA 1258 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1118 TGCAAGGTTTGTGCCGTGTACTAATTGTGGTGGTAGTACTAAAGTGTTTGAGGAAAAAGA 1177 Query 1259 AGATGGGTTTAAGAGATGCAATGGATGCAATGAGAATGGATTGGTACGTTGTAACAAGTG 1318 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1178 AGATGGGTTTAAGAGATGCAATGAATGCAATGAGAATGGATTGGTACGTTGTAACAGGTG 1237 Query 1319 TTGTCTTTAG-TAATT 1333 ||||| |||| ||||| Sbjct 1238 TTGTCATTAGCTAATT 1253 > Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1 Length=1723 Score = 353 bits (191), Expect = 2e-96 Identities = 372/457 (81%), Gaps = 21/457 (5%) Strand=Plus/Plus Query 880 ACAAGATAGTAG-TATACTTCACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGT 938 ||||||| || | | |||||||| | |||| |||||||||||||||| || || ||||| Sbjct 1039 ACAAGATTGT-GCTCTACTTCACAACCCTCCGAGGAATTCGAAAGACATACGAGGATTGC 1097 Query 939 TGTTGCGTTAGAGCGATATTGAGAGGGTTTCAGGTTGCGGTAGAGGAGCGTGACATCTCA 998 |||||||||||||||||| |||||||| |||| || ||||||| || ||||||||||| Sbjct 1098 TGTTGCGTTAGAGCGATACTGAGAGGGCTTCAAGTCACGGTAGACGAACGTGACATCTCT 1157 Query 999 ATGGACTCCAAATACAGGAAAGAGCTTCAGAA-TGCACTCG--G-CGAAGAGAAACCGGT 1054 ||||| || |||||||||||||||||||| || || || | | || |||||||||||| Sbjct 1158 ATGGATTCTAAATACAGGAAAGAGCTTCA-AAGTGTGCTTGTTGCCGCAGAGAAACCGGT 1216 Query 1055 TTGTTTGCCTCAGGTGTTTATAAGAGG--CGTCCGCATTGGTGGAATTGAGGAGATCAAG 1112 ||||||||||||||||||||| ||||| | || ||||||||| | |||||||| | | Sbjct 1217 TTGTTTGCCTCAGGTGTTTATCAGAGGAAC-TCA-CATTGGTGGCGTGGAGGAGATTATG 1274 Query 1113 -ATACTCAACGATGGAGGTGAACTGGCAGAGATGTTAAAAGATTTTCCTGCTTGCGAATC 1171 | || |||||||| |||||| | ||||||||||| |||||||| |||||||| ||| | Sbjct 1275 CAG-CTAAACGATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAA-C 1332 Query 1172 -CATTGGAGCC-TGC-GATAGCTGCGGAGATGCAAGGTTTGTGCCGTGTACTAATTGTGG 1228 | |||| | | ||| | ||||| || ||||||||||||||||| |||||||| || | Sbjct 1333 GC-TTGGGGACATGCCGG-AGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGA 1390 Query 1229 CGGTAGTACTAAAGTGTTTGAGGAACAAGAAGATGGGTTTAAGAGATG-CAATGGATGCA 1287 ||| || || ||||||||||| |||||||| || |||| ||| |||| | | ||||| Sbjct 1391 CGGAAGCACCAAAGTGTTTGAAGAACAAGACGAACGGTTCAAGCGATGTCC-TAAATGCA 1449 Query 1288 ATGAGAATGGATTGGTACGTTGTAACAAGTGTTGTCT 1324 |||||||||||||||| |||||| | ||||||||| Sbjct 1450 ATGAGAATGGATTGGTGCGTTGTCGCGTGTGTTGTCT 1486 Score = 132 bits (71), Expect = 8e-30 Identities = 98/111 (88%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 621 TTGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCT 680 ||| ||| |||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct 771 TTGACTTATAAACCTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTCT 830 Query 681 GATTTAGATCCTAACATTATCTCATCTTACAA-AAGAGCACTGTCCTCCAA 730 ||||||||||| | |||| ||||||||||||| || ||| |||| ||||| Sbjct 831 GATTTAGATCCCAGCATTGTCTCATCTTACAAGAA-AGCTTTGTCTTCCAA 880 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53516794225 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5