BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41340.1
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483204 jgi|Araly1|483204|fgenesh2_kg.4__2264__AT2G41340.1 965 0.0
Ahg938680 jgi|Araly1|938680|scaffold_502871.1 361 5e-99
> Ahg483204 jgi|Araly1|483204|fgenesh2_kg.4__2264__AT2G41340.1
Length=673
Score = 965 bits (522), Expect = 0.0
Identities = 617/663 (93%), Gaps = 6/663 (1%)
Strand=Plus/Plus
Query 9 gagagagaCGATGGAGGGGAAAGGGAAAGAGATAGTGGTTGGACATTCCATTAG-TAAAT 67
|||||||||||||| |||||||||||| ||||||| ||||| ||| |||||| | ||||
Sbjct 7 GAGAGAGACGATGGTGGGGAAAGGGAAGGAGATAGCGGTTGTACAGTCCATT-GATAAAC 65
Query 68 CAAGTGTAGAGTGTCACAAATATTACCTGGCACGTCGAACCACCATGGAGATGCTCCGAG 127
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 66 CAAGTGTGGAATGTCACAAATATTACCTGGCACGTCGAACAACCATGGAGATGCTCCGAG 125
Query 128 ACAGAGGATACGATGTCTCCGACGAAGATATTAACCTCTCCCTCCAGCAATTTCGAGCGC 187
||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||
Sbjct 126 ACAGAGGATACGATGTCTCCGACGAAGATGTTAACTTCTCCCTCGAGCAATTCCGAGCGC 185
Query 188 TCTATGGGGAACATCC-TGACGTAGATCTACTTCGTATCTCAGCCAAACATCGCTTTGAT 246
|||| || |||| || ||||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 186 TCTACGGCGAAC-GCCTTGACGTAGATCGACTTCGTATCTCTGCCAAGCATCGCTTTGAT 244
Query 247 TCTTCGAAAAAGA-TCTCGGTAGTGTTTTGTGGAACTGGTATAGTTAAAGTCAATGCGAT 305
||||||||||||| | | ||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 245 TCTTCGAAAAAGATTAT-GGTTGTGTTTTGTGGAACTGGTATGGTTAAAGTCAATGCCAT 303
Query 306 GCGCGTCATTGCAGCAGATGTGCTTAGCCGAGAAAATATAACCGGACTGATACTGGTTTT 365
||||| ||||||||||||||| || | |||||||| ||||||||||||||||||||||||
Sbjct 304 GCGCGCCATTGCAGCAGATGTACTGAACCGAGAAAGTATAACCGGACTGATACTGGTTTT 363
Query 366 GCAAAGTCATATAACGAACCAAGCTCTTAAAGCCGTTGAACTTTTCTCCTTTAAGGTCGA 425
|||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 364 GCAAAGCCATATAACAAATCAAGCTCTTAAAGCCGTTGAACTTTTCTCGTTTAAGGTCGA 423
Query 426 GTTATTCGAGATTACCGATTTGTTGGTTAACGTAAGCAAACATGTCTTGAGGCCAAAACA 485
|||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 424 GTTATTCGAGATAACCGATTTGCTGGTTAACGTAACCAAACATGTCTTGAGGCCAAAACA 483
Query 486 TCAGGTTCTGAACGATAAAGAGAAGGAATCACTTCTCAAGAAGTTCAGTATTGAGGAGAA 545
|||||||||||| ||||| ||||||||||||||||||||||| | |||||| ||||||||
Sbjct 484 TCAGGTTCTGAATGATAAGGAGAAGGAATCACTTCTCAAGAAATACAGTATCGAGGAGAA 543
Query 546 ACAACTTCCTCGGTTATCGAGCAAAGACCCGATTGTGCGATACTATGGACTAGAGACAGG 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ACAACTTCCTCGGTTATCGAGCAAAGACCCGATTGTGCGATACTATGGACTAGAGACAGG 603
Query 606 GCAAGTCATGAAGGTCACATACAAAGACGAGCTCAGTGAGTCGCATGTTACATACCGATG 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GCAAGTCATGAAGGTCACATACAAAGACGAGCTCAGTGAGTCGCATGTTACATACCGATG 663
Query 666 CGT 668
|||
Sbjct 664 CGT 666
> Ahg938680 jgi|Araly1|938680|scaffold_502871.1
Length=714
Score = 361 bits (195), Expect = 5e-99
Identities = 481/616 (78%), Gaps = 32/616 (5%)
Strand=Plus/Plus
Query 66 ATCAAGTGTAGAGTGTCACAAATATTACCTGGCACGTCGAACCACCATGGAGATGCTCCG 125
||| |||| |||| |||| | ||| || || || || | || || || ||||||||||
Sbjct 80 ATCGAGTGAAGAGAGTCATAGATACTATCTTGCGCGGCAAAATGCCTTGCAGATGCTCCG 139
Query 126 AGACAGAGGATACGATGTCTCCGACGAAGATATTAACCTCTCCCTCCAGC-AATTTCGAG 184
||||||||| ||| | ||||||||||||||||| || |||||||| || | | |||||||
Sbjct 140 AGACAGAGGCTACCAAGTCTCCGACGAAGATATCAATCTCTCCCTTCA-CGATTTTCGAG 198
Query 185 C-GCTCTATGGGGAACATCCTGACGTAGATC-TACTTCGTATCTCAGC-CAAACATCGCT 241
| | | || || |||| ||| || || |||| | || || ||||| || | | |||||||
Sbjct 199 CTG-TTTACGGCGAACGTCCCGATGTTGATCGT-CTCCGCATCTCCGCTC-AGCATCGCT 255
Query 242 TTGATTCTTCGAAAAAGATCTCGGTAGTGTTTTGTGGAACTGGTATAGTTAAAGTCAATG 301
|||||||| |||||| || ||| || |||| ||| |||||||| |||||||||||||
Sbjct 256 CCGATTCTTCTAAAAAGGTCAAGGTTGTCTTTTTTGGTACTGGTATGGTTAAAGTCAATG 315
Query 302 CGATGCGC-GTCATTGCAGCAGATGTGCTTAGCCGAGAAAATA-TAACCGGACTGATACT 359
| || ||| || || ||||| ||||| ||||||| || ||| | |||| || ||||| |
Sbjct 316 CAATCCGCAGT-ATAGCAGCGGATGTACTTAGCCAAG-AAACAGTAACTGGGCTGATTTT 373
Query 360 GGTTTTGCAAAGTCATA-TAACGAACCAAGCTC-TTAAAGCCGTTGAACT-TTTCTCCTT 416
|||| ||||||| || | |||| || ||||| | | |||||| ||||||| ||| | |||
Sbjct 374 GGTTCTGCAAAGCCA-AGTAACCAAACAAGC-CATGAAAGCCATTGAACTCTTT-T-CTT 429
Query 417 T-AAGGTCGAGTTATTCGAGATTACCGATTTGTTGGTTAACGTAAGCAAACATGTC-TTG 474
| ||||||||| ||||| |||| |||||| | | || ||| ||| |||||||| | |
Sbjct 430 TCAAGGTCGAGATATTCCAGATAACCGATCTACTAGTCAACATAACCAAACATG-CACTC 488
Query 475 AGGCCAAAACATCAGGTTCTGAACGATAAAGAGAAGGA-ATCACTTCTCAAGAAGTTCAG 533
| |||| |||||| |||| |||| ||||||||||| || | |||||||||||||||||||
Sbjct 489 AAGCCACAACATCGGGTTTTGAATGATAAAGAGAA-GACAACACTTCTCAAGAAGTTCAG 547
Query 534 TATTGAGGAGAAACAACTTCCTCGG-TTATCGA-GCAAAGACCCGATTGTGCGATACTAT 591
||||||||| ||||| | |||||| || || | | ||||| |||| || || |||||
Sbjct 548 TATTGAGGAAAAACAGCAACCTCGGATT-TCAAAG-AAAGATGCGATCGTCCGCTACTAC 605
Query 592 GGACTAGAGACAGGGCAAGTCATGAAGGTCACAT-ACAAAGACGAGCTCA-GTGAGTCGC 649
||| |||||| ||||||||| ||||||| | || | | || ||| |||| | || ||||
Sbjct 606 GGATTAGAGAAAGGGCAAGTTGTGAAGGTGA-ATTATAGAGGCGAACTCACG-GAATCGC 663
Query 650 ATGTTACATACCGATG 665
||||| | ||||||||
Sbjct 664 ATGTTGCCTACCGATG 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26304812730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5