BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41342.1
Length=505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483205 jgi|Araly1|483205|fgenesh2_kg.4__2265__AT2G41342.1 667 0.0
> Ahg483205 jgi|Araly1|483205|fgenesh2_kg.4__2265__AT2G41342.1
Length=490
Score = 667 bits (361), Expect = 0.0
Identities = 453/496 (91%), Gaps = 11/496 (2%)
Strand=Plus/Plus
Query 15 AGCAAATACATAATTTGGTCCAACACTAAACCAAC-CCTTCTGTCTCTATCTCATTTGTT 73
|||||||||| |||||||||||||| ||||||||| || ||||||||| |||||||||||
Sbjct 1 AGCAAATACACAATTTGGTCCAACAGTAAACCAACTCC-TCTGTCTCTCTCTCATTTGTT 59
Query 74 CTTAAACTTT-CATCTATTTTCGTATCTGAATAATTCTTTTCATCAAAGATTTTAGTTTT 132
||| || ||| | | || | || ||||||| ||||||||| ||||||| |||||||||||
Sbjct 60 CTTTAATTTTCCTTGTA-TATCCTATCTGATTAATTCTTTCCATCAAAAATTTTAGTTTT 118
Query 133 GAACCACATGGGATCAAGTTTGTGCTGTTCTCGCGATCCAGATAGCACCAGACGTAGTAC 192
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 119 GAACCACATGGGCTCAAGTTTGTGCTGTTCTCGCGATCCAGATACCACCAGAAGTAGTAC 178
Query 193 GATGGGGAGCACTAGCGACCGGAGGTGGCAAACCGGCGACGACAAGTATCTATCGGACAC 252
|||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 GATGGGGAACACGAGCGACCGGAGGTGGCAAACCGGCGACGACAACTATCTATCGGACAC 238
Query 253 AAGCACCTTTTCCGTGAAGGAGCAAGAGCATCAGCTTAAGGCGGCCAGACGGGAGGAGCA 312
||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 239 AAGCACCTTCTCCGTGAAGGAGCAAGATCATCAGCTTAAGGCGGCCAGATTGGAGGAGCA 298
Query 313 AAGACTTGGCCATGAAGCTGAGAAAGTCAACTCATGGGTCAAACATGAATCAGCCAGATT 372
||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 299 AAGACTTGGCCTTGAAGCTGAGAAAGTTAACACATGGGTCAAACATGAATCAGCCAGATT 358
Query 373 CGACCATCGTCCATAGTTGACCATTGTTTTGTTTTGACCAAGCTTTC-TATGTTTTTGTA 431
|||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 359 CGACCATCGTCCATAGTTGACCATTGCTTTGATTTGACCAAGCTTTCCTATGTTTTTGTA 418
Query 432 AACTATTAAACAGAGTTGTGTATT-TATGTTAACCACACATTAATTAACTATCAAAATTG 490
|||||| |||||||||||||||| ||| | | |||||||||||| | ||||||||||
Sbjct 419 AACTATCAAACAGAGTTGTGTATAATATAT-A-CCACACATTAAT-AGTTATCAAAATT- 474
Query 491 TT-TGGTTTAGAGACC 505
|| |||||||||||||
Sbjct 475 TTATGGTTTAGAGACC 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18352838309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5