BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41350.2
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934959 jgi|Araly1|934959|scaffold_402947.1 1524 0.0
Ahg934961 jgi|Araly1|934961|scaffold_402949.1 226 3e-58
Ahg948975 jgi|Araly1|948975|scaffold_800862.1 220 1e-56
Ahg947896 jgi|Araly1|947896|scaffold_704125.1 213 2e-54
Ahg947129 jgi|Araly1|947129|scaffold_703358.1 213 2e-54
Ahg915005 jgi|Araly1|915005|Al_scaffold_0001_5259 204 1e-51
> Ahg934959 jgi|Araly1|934959|scaffold_402947.1
Length=944
Score = 1524 bits (825), Expect = 0.0
Identities = 893/926 (96%), Gaps = 3/926 (0%)
Strand=Plus/Plus
Query 199 TTTTACCCCAAATTAGATTAGAGACGATGAGCGACGTCACCGGTGATCTCGCGGCGGTGA 258
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTTTCCCCCAATTGGATTAGAGACGATGAGCGACGTCACCGGTGATCTCGCGGCGGTGA 61
Query 259 GTGAAGCCAAGGGAGGTTCTGACGCCGCCCGGATATCGGAGGTGAAGGCGTGGCTCACCT 318
||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 62 GTGAAGCTAAGGGAGGTTCTGACGCCGCACGGATCTCGGAGGTGAAAGCGTGGCTCACCT 121
Query 319 CTCAGTTCGAAGCTGTCGGCAAAGAAGTACCCAATTTCGAGTACACTCATCGAAGCATTA 378
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 122 CTCAGTTCGAAGCCGCCGGCAAAGAAGTCCCCAATTTCGAGTACACTCATCGAAGCATTA 181
Query 379 CCCATTTGTATAATCTCGCTACCGCTTCTCAAGCTAAGTCTCAGGCTGCCACCATTGTCG 438
||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 182 CCCATCTGTATAATCTCGCCACCGCTTCTCAAGCTAAGTCTCAAGCTGCCACCATTGTCG 241
Query 439 CTAACGATTTTCGTCTCAAGGCTTCAGAATATCGTGCTCAAGCGGCTAGGATTAGAGAGA 498
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CTAACGATTTTCGTCTGAAAGCTTCAGAATATCGTGCTCAAGCGGCTAGGATTAGAGAGA 301
Query 499 TATTGGAGAGTGCAGGAATGTCACAAGAGAGCTTACCGTCAAATGTGGTCTCTTCAGCTC 558
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 302 TATTGGAGAGTGCAGGAATGTCACAAGAGAGTTTACCGTCAAATGTGGTCTCTTCAGCTC 361
Query 559 AAGTTCTTGCAAATGTGGCTAATTTGTTGAACATACGGGACACTGAACTGAGCAGTTTCC 618
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AAGTTCTTGCAAATGTGGCAAATTTGTTGAACATACGGGACACTGAACTGAGCAGTTTCC 421
Query 619 TTGTAGCAATGGGAGACATATCTCTGAGGAAGACTGGAGTGGAAGAGAAGAGGGCTAAAG 678
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 422 TTGTAGCAATGGGAGACATTTCTCTGAGGAAGACTGGAGTGGAAGAGAAAAGGGCTAAAG 481
Query 679 CACAGAAGGAGTCCAATGCTCTTCTTGACTATACAAGGAAAGCGATACAGAGGCTGACGT 738
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 482 CACAAAAGGAGTCTAATGCTCTTCTTGACTATACAAGGAAAGCTATACAGAGGCTGACGT 541
Query 739 ATTTGAAGAAAATCCTTGCGCAGCTAGAAGATGATGTAGTCCCTTGTGAATCACAGATGG 798
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 542 ATTTGAAGAAAATCCTTGCGCAGCTAGAAGACGATGTAGTCCCTTGTGAATCACAGATGG 601
Query 799 AGAACTGGAAAACAAATTTGGAAGTGATGGCGGTGAAGGAGGAACAATACATACAGCAGT 858
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 602 AGAACTGGAAAACAAATTTGGAAGTAATGGCGGTGAAGGAGGAACAATACATACAGCAGT 661
Query 859 ACAAGAAGTATGAGCAGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACA 918
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ACAAGAAGTAT--G-AGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACA 718
Query 919 GAGAGCTGGTAGAAATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCC 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 GAGAGCTGGTAGAAATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCCGTCC 778
Query 979 TTGATACTCTACGAAGCTACCAGGATTTACCTCCGGACAAAGCTTTAGCTGCACTAGCAA 1038
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 779 TTGATACTCTAAGAAGCTACCAGGATTTACCTCCGGACAAAGCTCTGGCTGCACTAGCAA 838
Query 1039 TCGAAGACAAGAAAAGACAGTTTACAGCCGCGGAAAAGTATCTAGAAGAAGTATTACAAT 1098
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 839 TCGAAGACAAGAAAAGACAGTTTGCAGCCGCGGAAAAGTATCTAGAAGAAGTATTACAAT 898
Query 1099 CAGCCCTTGAGACAAACGATGAGTGA 1124
||||||||||||||||| ||||||||
Sbjct 899 CAGCCCTTGAGACAAACAATGAGTGA 924
> Ahg934961 jgi|Araly1|934961|scaffold_402949.1
Length=277
Score = 226 bits (122), Expect = 3e-58
Identities = 126/128 (98%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 486 AGGATTAGAGAGATATTGGAGAGTGCAGGAATGTCACAAGAGAGCTTACCGTCAAATGTG 545
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 AGGGTTAGAGAGATATTGGAGAGTGCAGGAATGTCACAAGAGAGCTTACCGTCAAATGTG 161
Query 546 GTCTCTTCAGCTCAAGTTCTTGCAAATGTGGCTAATTTGTTGAACATACGGGACACTGAA 605
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 162 GTCTCTTCAGCTCAAGTTCTTGCAAATGTGGCAAATTTGTTGAACATACGGGACACTGAA 221
Query 606 CTGAGCAG 613
||||||||
Sbjct 222 CTGAGCAG 229
> Ahg948975 jgi|Araly1|948975|scaffold_800862.1
Length=325
Score = 220 bits (119), Expect = 1e-56
Identities = 135/143 (94%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 872 GCAGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACAGAGAGCTGGTAGA 931
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 135 GCAGATGTTACTCAATCGTGTTGGCTACTCTCCTAAGATCAGCCACAGAGAGCTGGTAGA 194
Query 932 AATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCCTTGATACTCTACG 991
||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||| |
Sbjct 195 AATGGCAGAGCACCGGAAGGAATTGGAGAAGATGGCAAAACCCGTTCTTGATACTCTAAG 254
Query 992 AAGCTACCAGGATTTACCTCCGG 1014
|||||||||||| || |||||||
Sbjct 255 AAGCTACCAGGACTTGCCTCCGG 277
> Ahg947896 jgi|Araly1|947896|scaffold_704125.1
Length=367
Score = 213 bits (115), Expect = 2e-54
Identities = 133/142 (94%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 872 GCAGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACAGAGAGCTGGTAGA 931
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 134 GCAGATGTTACTCAATTGTGTTGGCTACTCTCCTAAGATCAGCCACAGAGAGCTGGTAGA 193
Query 932 AATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCCTTGATACTCTACG 991
||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||| |
Sbjct 194 AATGGCAGAGCACCGGAAGGAATTGGAGAAGATGGCAAAACCCGTTCTTGATACTCTAAG 253
Query 992 AAGCTACCAGGATTTACCTCCG 1013
|||||||||||| || ||||||
Sbjct 254 AAGCTACCAGGACTTGCCTCCG 275
> Ahg947129 jgi|Araly1|947129|scaffold_703358.1
Length=368
Score = 213 bits (115), Expect = 2e-54
Identities = 133/142 (94%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 872 GCAGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACAGAGAGCTGGTAGA 931
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 135 GCAGATGTTACTCAATCGTGTTGGCTACTCTCCTAAGATCAGCCACAGAGAGCTGGTAGA 194
Query 932 AATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCCTTGATACTCTACG 991
||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||| |
Sbjct 195 AATGGCAGAGCACCGGAAGGAATTGGAGAAGATGGCAAAACCCGTTCTTGATACTCTAAG 254
Query 992 AAGCTACCAGGATTTACCTCCG 1013
|| ||||||||| || ||||||
Sbjct 255 AAACTACCAGGACTTGCCTCCG 276
> Ahg915005 jgi|Araly1|915005|Al_scaffold_0001_5259
Length=447
Score = 204 bits (110), Expect = 1e-51
Identities = 130/140 (93%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 874 AGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACAGAGAGCTGGTAGAAA 933
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 236 AGATGTTACTCAATCATGTTGGCTACTCTCCTAAGATCAGCCACAGAGAGCTGGTAGAAA 295
Query 934 TGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCCTTGATACTCTACGAA 993
||||| ||||||||||||||||||| |||||| ||||||| || |||||||||||| |||
Sbjct 296 TGGCAAAGCACCGGAAGGAATTGGAGAAGATGGCAAAACCCGTTCTTGATACTCTAAGAA 355
Query 994 GCTACCAGGATTTACCTCCG 1013
|||||||||| || ||||||
Sbjct 356 GCTACCAGGACTTGCCTCCG 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5