BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41370.1
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934964 jgi|Araly1|934964|scaffold_402952.1 2484 0.0
Ahg324222 jgi|Araly1|324222|fgenesh1_pm.C_scaffold_5001766 747 0.0
> Ahg934964 jgi|Araly1|934964|scaffold_402952.1
Length=1517
Score = 2484 bits (1345), Expect = 0.0
Identities = 1462/1517 (96%), Gaps = 13/1517 (1%)
Strand=Plus/Plus
Query 226 TTTTAT-AAAAAGATGAGCAATCTTGAAGAATCTTTGAGATCTCTATCGTTGGATTTCCT 284
|||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 8 TTTTATAAAAAAGATGAGCAGTCTTGAAGAATCATTGAGATCTCTATCGTTGGATTTCCT 67
Query 285 GAACCTACTAATCAACGGTCAAGCTTTCTCCGACGTGACTTTCAGCGTTGAAGGTCGTTT 344
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 AAACCTACTAATCAACGGTCAAGCTTTCTCCGACGTGACTTTCAGCGTTGAAGGTCGTTT 127
Query 345 AGTCCACGCTCACCGTTGTATCCTCGCCGCACGGAGTCTTTTCTTCCGCAAATTCTTTTG 404
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 128 AGTCCACGCTCACCGTTGTATCCTCGCCGCACGGAGTCTTTTCTTTCGCAAATTCTTCTG 187
Query 405 TGGGACAGACTCACCACAACCTGTCACAGGTATAGACCCGACCCAACATGGGTCCGTACC 464
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 188 TGGGACAGACTCACCACAACCTGTCACTGGTATAGACCCGACCCGACATGGGTCCGTACC 247
Query 465 CGCTAGCCCAACAAGAGGCTCCACGGCCCCAGCTGGAATTATACCAGTGAACTCAGTCGG 524
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 248 CGCTAGCCCAACACGAGGCTCCACGGCCCCAGCTGGAGTTATACCAGTGAACTCAGTCGG 307
Query 525 TTATGAGGTTTTTCTGTTGCTACTTCAGTTTCTTTATAGCGGACAAGTCTCCATCGTGCC 584
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TTATGAGGTGTTTCTGTTGCTACTTCAGTTTCTTTATAGCGGACAAGTCTCCATCGTGCC 367
Query 585 GCAGAAACACGAGCCTAGACCTAATTGTGGCGAGAGAGGATGTTGGCACACTCATTGCTC 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GCAGAAACACGAGCCTAGACCTAATTGTGGCGAGAGAGGATGTTGGCACACTCATTGCTC 427
Query 645 AGCCGCCGTTGATCTTGCTCTTGATACTCTCGCCGCCTCTCGTTACTTCGGCGTCGAGCA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AGCCGCCGTTGATCTTGCTCTTGATACTCTCGCCGCCTCTCGTTACTTCGGCGTCGAGCA 487
Query 705 GCTCGCATTGCTCACCCAGAAACAATTGGCAAGCATGGTGGAGAAAGCCTCTATCGAAGA 764
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 488 GCTCGCATTGCTCACTCAGAAACAATTGGCAAGCATGGTGGAGAAAGCCTCTATTGAAGA 547
Query 765 TGTGATGAAAGTTTTAATAGCATCAAGAAAGCAAGACATGCATCAATTATGGACCACCTG 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 548 TGTGATGAAAGTTTTAATAGCATCAAGAAAGCAAGACATGCATCAATTATGGACCACTTG 607
Query 825 CTCTCACTTAGTTGCTAAATCAGGTCTCCCACCAGAGATTCTTGCCAAGCATCTCCCTAT 884
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 608 CTCTCACTTAGTTGCTAAATCAGGTCTCCCACCAGAGATTCTAGCCAAACATCTCCCTAT 667
Query 885 TGACGTCGTCACCAAAATAGAAGAGCTTCGTCTTAAATCTTCTATAGCTCGCCGTTCTCT 944
|| || ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 668 CGATGTTGTCGCCAAAATAGAAGAGCTTCGTCTGAAATCTTCTATAGCTCGCCGTTCTCT 727
Query 945 AATGCCTCACAACCACCACCATGATCTCAGCGTGGCTCAAGACCTAGAAGATCAAAAGAT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 AATGCCTCACAACCACCACCATGATCTCAGCGTGGCTCAAGACCTAGAAGATCAAAAGAT 787
Query 1005 TAGAAGGATGAGACGAGCTTTGGATTCATCAGACGTGGAACTAGTGAAGCTGATGGTAAT 1064
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 788 TAGAAGGATGCGACGAGCTTTGGATTCATCAGACGTGGAGCTAGTGAAGCTGATGGTTAT 847
Query 1065 GGGAGAAGGACTCAATCTTGATGAGTCGTTAGCATTGCATTACGCTGTTGAAAGCTGTAG 1124
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 848 GGGAGAAGGACTCAATCTTGATGAGTCATTAGCATTGCATTACGCTGTTGAAAGTTGTAG 907
Query 1125 TAGAGAAGTTGTGAAGGCTTTGCTTGAGCTTGGAGCTGCCGATGTGAATTATCCGGCGGG 1184
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 908 TAGAGAAGTTGTCAAGGCTTTGCTTGAACTTGGAGCTGCCGACGTGAATTATCCGGCGGG 967
Query 1185 TCCGGCAGGGAAAA-CACCTTTGCACATCGCGGCTGAGATGGTCTCTCCAGACATGGTGG 1243
||| || ||||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 968 TCCAGC-GGGAAAAACACCGTTGCACATTGCGGCTGAGATGGTCTCTCCAGACATGGTGG 1026
Query 1244 CTGTTCTGTTAGACCACCATGCTGATCCTAATGTGA-GGACAGTTGGTGGAATCACGCCT 1302
||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |||
Sbjct 1027 CTGTTCTGTTAGACCACCACGCTGATCCTAATGT-ACGGACAGTTGGTGGAATCACTCCT 1085
Query 1303 CTTGATATCCTTAGAACATTAACTTCGGATTTCTTGTTCAAGGGGGCAGTTCCTGGATTG 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CTTGATATCCTTAGAACATTAACTTCGGATTTCTTGTTCAAGGGGGCAGTTCCTGGATTG 1145
Query 1363 ACTCACATTGAACCGAATAAACTTAGGCTTTGCCTCGAGCTTGTTCAATCCGCTGCAATG 1422
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1146 ACTCACATTGAACCGAACAAGCTTAGGCTTTGCCTCGAGCTTGTTCAATCAGCTGCAATG 1205
Query 1423 GTGATATCTCGAGAAGAAGGAAACAATAGCAACAACCAAAACAATGATAACAATACCGGG 1482
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1206 GTGATATCTCGAGAAGAAGGAAACAATAGCAACAATCAAAATAATGATAACAATACTGGG 1265
Query 1483 ATTTACCCTCATATGAATGAGGAGCACAATAGTGGAAGCAGTGGAGGGAGCAATAACAAT 1542
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 ATTTACCCTCACATGAATGAGGAGCACAATAGTGGAAGCAGTGGAGGGAGCAATAACAAT 1325
Query 1543 TTGGATTCAAGATTGGTTTATCTCAATCTTGGAGCAGGTACGGGTCAGATGGGTCCAGGT 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TTGGATTCAAGATTGGTTTATCTCAATCTTGGAGCAGGTACGGGTCAGATGGGTCCAGGT 1385
Query 1603 CGAGATCAAGGGGATGACCATAACAGTCAGAGGGAAGGTATGAGTCGGcatcatcatcat 1662
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1386 CGAGATCAAGGGAATGACCATATCAGTCAGAGGGAAGGTATGAGTCGGCATCATCATCAT 1445
Query 1663 catca--a-gacccatctacaatgtatcatcaccatcatcaacatcaCTTCTAGTTCTCT 1719
||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1446 CATCATCAAGACCCATCTACAAT--AT-ATCACCATCATCAACATCACTTCTAGTTCTCT 1502
Query 1720 ATATTGGTCTCTATATC 1736
|| | ||||||||||||
Sbjct 1503 AT-T-GGTCTCTATATC 1517
> Ahg324222 jgi|Araly1|324222|fgenesh1_pm.C_scaffold_5001766
Length=1407
Score = 747 bits (404), Expect = 0.0
Identities = 796/981 (81%), Gaps = 44/981 (4%)
Strand=Plus/Plus
Query 505 ATACCAGTGAACTCAGTCGGTTATGAGGTTTTTC-T-GTTGCTACTTCAGTTTCTT-TAT 561
||||| || ||||| |||||||| || | ||||| | || ||||||||| ||||| ||
Sbjct 253 ATACCGGTTAACTCGGTCGGTTACGAAG-TTTTCTTACTT-CTACTTCAG-TTCTTATAC 309
Query 562 AGCGGACAAGTCTCCATCGTGCCGCAGAAACACGAGCCTAGACCTAATTGTGGCGAGAGA 621
|| || |||||||| || || || || || |||||||| ||| | |||||||| || ||
Sbjct 310 AGTGGTCAAGTCTCAATTGTACCACATAAGCACGAGCCAAGATCGAATTGTGGAGATAGG 369
Query 622 GGATGTTGGCACACTCATTGCTCAGCCGCCGTTGATCTTGCTC-TT-GATACTC-TCGCC 678
||||| |||||||| |||||| | || ||||| |||| | ||| || |||| || | |||
Sbjct 370 GGATGCTGGCACACGCATTGCACTGCAGCCGTCGATC-T-CTCTTTAGATA-TCTTAGCC 426
Query 679 GCCTCTCGTTACTTCGGCGTCGAGCAGCTCGCATTGCTCACCCAGAAACAATTGGCAAGC 738
||| |||| || || ||||||||||||||||| || || || |||||||| ||| ||||
Sbjct 427 GCCGCTCGATATTTTGGCGTCGAGCAGCTCGCGTTACTTACGCAGAAACATTTGACAAGT 486
Query 739 ATGGTGGAGAAAGCCTCTATCGAAGATGTGATGAAAGTTTTAATAGCATCAAGAAAGCAA 798
||||||||||||||||| | ||||||||||||||||| | ||||| ||||||||||||
Sbjct 487 ATGGTGGAGAAAGCCTCCGTTGAAGATGTGATGAAAGTGCTGATAGCTTCAAGAAAGCAA 546
Query 799 GACATGCATCAATTATGGACCACCTGCTCTCACTTAGTTGCTAAATCAGGTCTCCCACCA 858
||||||||||||||||||||||| |||||| || || | || ||||| ||||| |||| |
Sbjct 547 GACATGCATCAATTATGGACCACTTGCTCTTACCTAATCGCCAAATCCGGTCTTCCACAA 606
Query 859 GAGATTCTTGCCAAGCATCTCCCTATTGA-CGTCGTCA-CCAAAATAGAAGAGCTTCGTC 916
|||||||| ||||| |||||||| || || | | || | |||| | || ||||| ||||
Sbjct 607 GAGATTCTAGCCAAACATCTCCCAATCGAACTT-GT-AGCCAAGGTTGAGGAGCTCCGTC 664
Query 917 TTAAATCTTCTATAGC-TCGCCGTTCTCTAATGCCTCACAACCACCACCATGATCTCAGC 975
| |||||||| || || || ||||| |||||||||||| |||| ||| | | ||| |
Sbjct 665 TCAAATCTTCAAT-GCCTCTTCGTTCCCTAATGCCTCACCACCATGACC-TAACCTC-G- 720
Query 976 GTGGCTCAAGACCTAGAAGATCAAAAGATTAGAAGGATGAGACGAGCTTTGGATTCATCA 1035
| || |||||| || || || ||||| || ||||||||||| || |||||||| ||
Sbjct 721 -T--CTTTAGACCTCGAGGACCAGAAGATCAGGAGGATGAGACGTGCATTGGATTCCTCC 777
Query 1036 GACGTGGAACTAGTGAAGCTGATGGTAATGGGAGAAGGACTCAATCTTGATGAGTCGTTA 1095
|| || || || |||||||| ||||| |||||||||||||||||||| |||||||| ||
Sbjct 778 GATGTCGAGCTTGTGAAGCTAATGGTGATGGGAGAAGGACTCAATCTAGATGAGTCCCTA 837
Query 1096 GCATTGCATT-ACGCTGTTGA-AAGCTGTAGTAGAGAAGTTGTGAAGGCT-TTGCTTGAG 1152
|| ||| ||| |||| ||||| || ||||||||||| ||||||||||| || ||||||
Sbjct 838 GCTTTG-ATTTACGCCGTTGAGAAT-TGTAGTAGAGAGGTTGTGAAGGCACTT-CTTGAG 894
Query 1153 CTTGGAGCTGCCGATGTGAATTATCCGGCGGGTCCGGCAGGGAAAACAC-CT-TTGCACA 1210
|||||||| ||||||||||| ||||| || ||||| |||||||||| | || || ||||
Sbjct 895 CTTGGAGCAGCCGATGTGAACTATCCCGCCGGTCCCACAGGGAAAAC-CGCTCTT-CACA 952
Query 1211 TCGCGGCTGAGATGGTCTCTCCAGACATGGTGGCTGTTCTG--TTAGACCACCATGCTGA 1268
|||||||||| ||||||||||| |||||||||||||| || || |||||||| |||||
Sbjct 953 TCGCGGCTGAAATGGTCTCTCCGGACATGGTGGCTGT-CTTACTT-GACCACCACGCTGA 1010
Query 1269 TCCTAATGTG-AGGACAGTTGG-TGGAATCACGCCTCTTGATATCCTTAGAACATTAACT 1326
|| || ||| || || || || ||||||||| ||||| || ||||||||||| ||||
Sbjct 1011 CCCAAACGTGCAG-ACTGT-GGATGGAATCACTCCTCTCGACATCCTTAGAACCCTAACG 1068
Query 1327 TCGGATTTCTTGTTCAAGGGGGC-AGTTCCTGGATTGACTCACATTGAACCGAATAAACT 1385
|||||||| |||||||||||||| | |||||||||||||||| ||||| || ||||| ||
Sbjct 1069 TCGGATTTTTTGTTCAAGGGGGCGA-TTCCTGGATTGACTCATATTGAGCCCAATAAGCT 1127
Query 1386 TAGGCTTTGCCTCGAGCTTGTTCAATCCGCTGCAATGGTGATATCTCGAGAAGAAGGAAA 1445
|||||||| |||||||| || || ||||| ||| |||| ||||| || |||||||||||
Sbjct 1128 CAGGCTTTGTCTCGAGCTGGTCCAGTCCGCGGCATTGGTTATATCACGCGAAGAAGGAAA 1187
Query 1446 CAATAGCAACAACCAAAACAA 1466
||||| || ||| | |||||
Sbjct 1188 CAATACCAGTAACGACAACAA 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74694970445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5