BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41380.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934965 jgi|Araly1|934965|scaffold_402953.1 1242 0.0
> Ahg934965 jgi|Araly1|934965|scaffold_402953.1
Length=854
Score = 1242 bits (672), Expect = 0.0
Identities = 763/807 (95%), Gaps = 5/807 (1%)
Strand=Plus/Plus
Query 37 AAC-AATGGCGAAATTATTCATCAAGCAAGCAGAGCAATATGCAGCAGCCCGACCCAGTT 95
||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 20 AACAAATGGCGAAATTATTCATCAAGCAAGCGGAGCAATACGCAGCAGCCCGACCGAGTT 79
Query 96 ACCCCACCAAACTCTTCGAATATATCGCATCGAAAACACCGTGCCACGACCTTGCCTGGG 155
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 80 ACCCGACCAAACTCTTCGAATATATCGCATCGAAAACACCGTGCCACGACCTTGCTTGGG 139
Query 156 ACGTTGGCGCCGGAAGCGGCCAAGCCTCACGATCGCTAGCCGGAATCTACAAGAACGTGA 215
|||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 140 ACGTCGGCGCCGGAAGCGGTCAAGCCTCACGATGGCTAGCCGGAATCTACAAGAACGTGA 199
Query 216 TTGCTACAGACACGAGCTCAAAGCAACTTGAATTTGCTGCAAAGCTTCCCAACGTCCGTT 275
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TTGCTACCGACACGAGCTCGAAGCAACTTGAATTTGCTGCAAAGCTTCCCAACGTCCGTT 259
Query 276 ACGAGATCACTCCACCGACGATGTCTTCATCGGAGATCGAGAAGCTAGTAGCACCTGAAT 335
|||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 260 ACGAGATCACTCCACCAACGATGTCTTCATTGGAGATAGAGAAGCTAGTAGCACCTGAAT 319
Query 336 CATCAGTTGATTTAGTCACCGTCGCTCAAGCCCTTCATTGGTTCGACCTCACGAACTTTT 395
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 320 CATCAGTCGATTTAGTCACCGTCGCACAAGCCCTTCATTGGTTCGACCTCACGAACTTTT 379
Query 396 ACAGCAACGTGAAACACGTGCTCAAGAAACCCAACGGAGTAATCGCCGCCTGGTGCTACA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ACAGCAACGTGAAACACGTGCTCAAGAAACCCAACGGAGTAATCGCCGCCTGGTGCTACA 439
Query 456 CCAATCCGGAAGTTAACGACGCCGTGGACAAGGTCTTTC-AACGGTTTTACGATGAGAAA 514
|||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 440 CCAATCCGGAGGTTAACGCCGCCGTGGACAAGGT-TTTCCAACGGTTTTACGATGAGAAA 498
Query 515 CTTGGTCCTCATTGGGATCTAGCGCGACGGCTTGTGGAGGATGGGTACAGAGGAATTGAG 574
||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 499 CTTGGCCCTCATTGGGATAAAGCGAGGCGGCTTGTGGAGGATGGGTACAGAGGAATTGAG 558
Query 575 TTTCCGTTCGAGAAAGTGGATAATGATGAGTCAACGGAAAGTCAAAGTTTTCCGGTGAGG 634
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 559 TTCCCGTTCGAGAAGGTGGATAATGATGAGTCAACGGAAAGTCAAAGTTTGCCGATAAGG 618
Query 635 TTTGTAACGGAGAAAGAAATGGTGTTTGAAGAGTATATGACGTATCTGAGGTCATCTTCG 694
|| || || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 619 TTCGTGACTGAGAAAGAAATGGTGTTTGAAGAGTATATGACTTATCTGAGGTCATCTTCG 678
Query 695 GCGTATCAGACGGCTAAGGAGAAAGGTTTAGAGCTTTTGACGGCTGAGATGGAAGGAGAG 754
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 679 GCGTATCAGACGGCTAAGGAGAAAGGTTTAGAGCTTTTGACGACGGAGATGGAAGGAGAA 738
Query 755 TTTGCTGGTTCGTGGAAAGAAGATGGGAAAGAGAAGAAAGTTGTTAGGTATCCGATTTAT 814
||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 739 TTTGCTGATTCGTGGAAAGAAGATGGGAAGGAGAAGAAAGTTGTTAGGTTTCCGATTCA- 797
Query 815 CT-GTTGATCGGAAGAGTTGCAGAAGA 840
|| ||||||||||||||||| ||||||
Sbjct 798 CTTGTTGATCGGAAGAGTTGGAGAAGA 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5