BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41410.1
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934970 jgi|Araly1|934970|scaffold_402958.1 1192 0.0
> Ahg934970 jgi|Araly1|934970|scaffold_402958.1
Length=702
Score = 1192 bits (645), Expect = 0.0
Identities = 677/693 (98%), Gaps = 0/693 (0%)
Strand=Plus/Plus
Query 139 TCTTCTCCGATATGAAGCTCGCCGCTAGCCTCAACCGCCTCAGCCCCAAACGTCTCTTCC 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 TCTTCTCCGATATGAAGCTCGCCGCTAGCCTCAACCGCCTCAGCCCCAAACGTCTCTTCC 69
Query 199 GTACCAAATCAAAAGCTTCCGTCTCCAGATCTGAGCCTTCTTCCTTCAGCTCCAATGCTT 258
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 GTTCCAAATCAAAAGCTTCCGTCTCCAGATCTGAGCCTTCTTCCTTCAGCTCCAATGCTT 129
Query 259 CTTCCTCTTCCTCTGATGGATCTTACGGTAACCTCAAACAAGGTCCAACCGCGACTCCGA 318
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 130 CTTCCTCTTCCTCTGATGGATCGTACGGTAACCTCAAACAAGGTCCAACCGCGACTCCGA 189
Query 319 TCAGTGTTCTCCCTCAAAACTCCGGCGATTTTTACACTGAGCTTGTTCAAGCTTTTAAAC 378
||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 190 TCAGTGTTCTCCCTCAAAACTCCGGTGATTTTTACACTGAGCTTATTCAAGCGTTTAAAT 249
Query 379 TGATCGATCGTGATGACGACGGTGTTGTTTCCAGAGGAGATCTCGCGGCGTTGATTAGCA 438
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TGATCGATCGTGATGATGACGGTGTTGTTTCCAGAGGAGATCTCGCGGCGTTGATTAGCA 309
Query 439 GGTTAAGTCATGAACCACCGAGTCAAGAAGAGGTGAGTTTGATGCTAAGAGAAGTAGACG 498
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 310 GGTTAAGTCCTGAACCACCGAGTCAAGAAGAGGTGAGTCTGATGCTAAGAGAAGTAGACG 369
Query 499 GCGGAGACGGTGGTTGTATCAGCCTTGAAGATCTTGCTAGCCGTGTCGCTGGTACTTCCG 558
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 370 GCGGAGACGGTGGTTGTATCAGCCTTGAAGAGCTTGCTAGCCGTGTCGCTGGTACTTCCG 429
Query 559 GTGAAGGCTCTGTTGAGACGGAGGAGCTGAGAGAGGTGTTCGAGATTTTTGACGTGGATC 618
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GTGAAGGATCTGTTGAGACGGAGGAGCTGAGAGAGGTGTTCGAGATTTTTGACGTGGATC 489
Query 619 GTAACGGAAAAATATCGGCGGAGGAGTTACACAGAGTTTTTGGAGTGATCGGAGATGAAC 678
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 490 GTAACGGGAAAATATCGGCGGAGGAGTTACACAGAGTATTTGGAGTGATCGGAGATGAAC 549
Query 679 GGTGCACGTTAGAAGAGTGTATGCGTATGATAGCGACGGTTGATGGAAACGGTGACGGTT 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GGTGCACGTTAGAAGAGTGTATGCGTATGATAGCGACGGTTGATGGAAACGGTGACGGTT 609
Query 739 TTGTTTGCTTCGATGACTTTTGCCGCATGATGGTTCCAGCGATGAATGATCATCATCATT 798
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 610 TTGTTTGCTTCGAAGACTTTTGCCGCATGATGGCTCCAGCGATGAATGATCATCATCATT 669
Query 799 AGAATCATGTTTGATTGATGATGGTGACATCAC 831
|||||||||||||||||||||| ||||||||||
Sbjct 670 AGAATCATGTTTGATTGATGATTGTGACATCAC 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43155142044
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5