BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G41415.1

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483213 jgi|Araly1|483213|fgenesh2_kg.4__2273__AT2G41415.1         409    1e-113


> Ahg483213 jgi|Araly1|483213|fgenesh2_kg.4__2273__AT2G41415.1
Length=458

 Score =  409 bits (221),  Expect = 1e-113
 Identities = 251/265 (95%), Gaps = 4/265 (2%)
 Strand=Plus/Plus

Query  49   CATTCAAACCATGAAATCATCCCATGCATATCTCGTCTGCATACTGTTGCTCTCTCTATT  108
            ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||
Sbjct  1    CATTCAAACCATGAAATCATCACATGCATCTCTCATCTGCATACTGTTGCTCTCTCTATT  60

Query  109  TTCTCTACATCAATGTGTGAGGTTAGAAAGATCGAACAAAATCGATATGTCTGTATGCGT  168
            | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  61   TGCTCTACATCAATGTGTGAGGTTACAAAGATCGAACAAAATCGATATGTCTGTATGCGT  120

Query  169  CCATGAAATTTGCGGTGGTGTTTTCGACGGAGGCTGTTATTGCTGTCCCAAAACGCCAGC  228
            |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCATGACATTTGCGGCGGTGTTTTCGACGGAGGCTGTTATTGCTGTCCCAAAACGCCAGC  180

Query  229  TCTTTGCTGGGCAGACATAC-AATTCTGCACCACCTATTGTCAATCTCAAACTTAAAACC  287
            ||||||||||||||||| || ||||||||||||||||||||||  |||||| ||||||||
Sbjct  181  TCTTTGCTGGGCAGACA-ACCAATTCTGCACCACCTATTGTCACGCTCAAAGTTAAAACC  239

Query  288  TT--AAATAAACTGATCTGGAGCTA  310
            ||  |||||||||||||||||||||
Sbjct  240  TTTTAAATAAACTGATCTGGAGCTA  264


 Score =  191 bits (103),  Expect = 5e-48
 Identities = 135/150 (90%), Gaps = 3/150 (2%)
 Strand=Plus/Plus

Query  418  TCTTGAGGTTTAAAGATCTTTTGAAAGCATGTTGAGGTGGAATCGTAGCCATTATGTATT  477
            |||||||||||||||||||| |||||| ||||||||||| | ||  |   ||||||| ||
Sbjct  312  TCTTGAGGTTTAAAGATCTTGTGAAAGGATGTTGAGGTGTAGTC--ATTAATTATGTGTT  369

Query  478  TCCTTAGTTTACAAGTAATATACCATAATATTTGTTTTGATGTTTTTCTGTTGTAGAATC  537
            |||||||||||||||||||||||||||||||||||| ||||| |||||| || || ||||
Sbjct  370  TCCTTAGTTTACAAGTAATATACCATAATATTTGTTGTGATG-TTTTCTATTTTATAATC  428

Query  538  GGGGAATCTCATAAATTCAGACTTATTGAG  567
            ||||||||||||||||||||||||||||||
Sbjct  429  GGGGAATCTCATAAATTCAGACTTATTGAG  458



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21176351895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5