BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41415.1 Length=579 Score E Sequences producing significant alignments: (Bits) Value Ahg483213 jgi|Araly1|483213|fgenesh2_kg.4__2273__AT2G41415.1 409 1e-113 > Ahg483213 jgi|Araly1|483213|fgenesh2_kg.4__2273__AT2G41415.1 Length=458 Score = 409 bits (221), Expect = 1e-113 Identities = 251/265 (95%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 49 CATTCAAACCATGAAATCATCCCATGCATATCTCGTCTGCATACTGTTGCTCTCTCTATT 108 ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| Sbjct 1 CATTCAAACCATGAAATCATCACATGCATCTCTCATCTGCATACTGTTGCTCTCTCTATT 60 Query 109 TTCTCTACATCAATGTGTGAGGTTAGAAAGATCGAACAAAATCGATATGTCTGTATGCGT 168 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 TGCTCTACATCAATGTGTGAGGTTACAAAGATCGAACAAAATCGATATGTCTGTATGCGT 120 Query 169 CCATGAAATTTGCGGTGGTGTTTTCGACGGAGGCTGTTATTGCTGTCCCAAAACGCCAGC 228 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCATGACATTTGCGGCGGTGTTTTCGACGGAGGCTGTTATTGCTGTCCCAAAACGCCAGC 180 Query 229 TCTTTGCTGGGCAGACATAC-AATTCTGCACCACCTATTGTCAATCTCAAACTTAAAACC 287 ||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||| Sbjct 181 TCTTTGCTGGGCAGACA-ACCAATTCTGCACCACCTATTGTCACGCTCAAAGTTAAAACC 239 Query 288 TT--AAATAAACTGATCTGGAGCTA 310 || ||||||||||||||||||||| Sbjct 240 TTTTAAATAAACTGATCTGGAGCTA 264 Score = 191 bits (103), Expect = 5e-48 Identities = 135/150 (90%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 418 TCTTGAGGTTTAAAGATCTTTTGAAAGCATGTTGAGGTGGAATCGTAGCCATTATGTATT 477 |||||||||||||||||||| |||||| ||||||||||| | || | ||||||| || Sbjct 312 TCTTGAGGTTTAAAGATCTTGTGAAAGGATGTTGAGGTGTAGTC--ATTAATTATGTGTT 369 Query 478 TCCTTAGTTTACAAGTAATATACCATAATATTTGTTTTGATGTTTTTCTGTTGTAGAATC 537 |||||||||||||||||||||||||||||||||||| ||||| |||||| || || |||| Sbjct 370 TCCTTAGTTTACAAGTAATATACCATAATATTTGTTGTGATG-TTTTCTATTTTATAATC 428 Query 538 GGGGAATCTCATAAATTCAGACTTATTGAG 567 |||||||||||||||||||||||||||||| Sbjct 429 GGGGAATCTCATAAATTCAGACTTATTGAG 458 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21176351895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5