BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41420.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483214 jgi|Araly1|483214|fgenesh2_kg.4__2274__AT2G41420.1 891 0.0
Ahg324226 jgi|Araly1|324226|fgenesh1_pm.C_scaffold_5001770 102 3e-21
> Ahg483214 jgi|Araly1|483214|fgenesh2_kg.4__2274__AT2G41420.1
Length=673
Score = 891 bits (482), Expect = 0.0
Identities = 635/701 (91%), Gaps = 41/701 (6%)
Strand=Plus/Plus
Query 12 AATAACTGCAAAACGCGTTATACTTAAAACACTCTCCTCTTTTCCTTGTCCTTCTCTATC 71
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| |
Sbjct 1 AATAACTGCAAAACGCGTTTTACTTAAAACACTCTCCTCTTTTCCTTTTTCTTCTCT-T- 58
Query 72 GCTTCTATAAAC-TTT-TTC--GATCTAAGGTTCGTGATCTCCTTCTTCTCTACGAAGTT 127
| ||| | || ||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 59 TC-TCT-TTCACTTTTCTTCTGGATCTAAGGTTCGTGATCTCCTTCCTCTCTACGAAGTT 116
Query 128 TACACTTTTTCTTCAAA-G-G----A-AACAATGAGCCAGTACAATCAACCTCCCGTTGG 180
||| | ||||||||||| | | | ||||||||||||||||||||||||||| || ||
Sbjct 117 TACGC-TTTTCTTCAAAGGAGATCAAGAACAATGAGCCAGTACAATCAACCTCCTGTCGG 175
Query 181 TGTTCCTCCTCCTCAAGGTTATCCACCGGAGGGATATCCAAAAGATGCTTATCCACCACA 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 176 TGTTCCTCCTCCTCAAGGTTATCCACCGGAGGGATATCCAAAGGATGCTTATCCACCACA 235
Query 241 AGGATATCCTCCTCAGGGATATCCTCAGCAAGGCTATCCACCTCAGGGATATCCTCAACA 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 AGGATATCCTCCTCATGGATATCCTCAGCAAGGCTATCCACCTCAGGGATATCCTCAACA 295
Query 301 AGGTTATCCTCAGCAAGGATATCCTCCACCGTACGCGCCTCAATATCCTCCACCACCGCA 360
|||||| || | |||| ||||||||||| ||||||||||| || |||||
Sbjct 296 AGGTTA---TC--C-------TCCT---CCGTACGCGCCGCAATATCCTCCGCCGCCGCA 340
Query 361 GCATCAGCAACAACAGAGCAGTCCTGGCTTTCTAGAAGGATGTCTTGCTGCTCTGTGTTG 420
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 341 GCATCAGCAACAACAGAACAGTCCTGGGTTTCTAGAAGGATGTCTTGCTGCTCTGTGCTG 400
Query 421 TTGCTGTCTCTTGGATGCTTGCTTCTGATTGGAGtctctctctctctGCATAAAGCTTCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TTGCTGTCTCTTGGATGCTTGCTTCTGATTGGAGTCTCTCTCTCTCTGCATAAAGCTTCG 460
Query 481 GGATTTATTTGTAAGAGGGTTTTGGTTAAACAAAAACCTTAATTGATTTGTGGGGCATTA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 461 GGATTTATTTGTAAGAGGGTTTTGGTTAAACAAAAACCTTAATTGATTTGTGGG-CATTA 519
Query 541 AAAATGAATCTCTCGATGATTCTCTTTCGTTTTATG-TGTAATGTTCTTCGGTTCATAAC 599
||||||||||| || ||||||||||||||||||||| | || |||||||||||||| |
Sbjct 520 AAAATGAATCTATCCATGATTCTCTTTCGTTTTATGCTTTA-TGTTCTTCGGTTCA---C 575
Query 600 ATTTTAACTATTGTCTATCGACGTTCTGCCTTAGTTTGTATTTGATTATGGGAATGTAAA 659
||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 576 ATT--AACTATTGTCTATCGACGTTCTGGCTTAGTTTGGATTTGATTATGGGAATGTAAA 633
Query 660 TTGGTTGGGAG-ACACTATTCTATGCCATAGTTTATTGCTT 699
||||| ||| | ||||||||||||||| |||||||||||||
Sbjct 634 TTGGT-GGGTGGACACTATTCTATGCCCTAGTTTATTGCTT 673
> Ahg324226 jgi|Araly1|324226|fgenesh1_pm.C_scaffold_5001770
Length=264
Score = 102 bits (55), Expect = 3e-21
Identities = 129/162 (80%), Gaps = 15/162 (9%)
Strand=Plus/Plus
Query 290 TATCCTCAACAAGGTTATCCTCAGCAAGGATATCCTCCACCGTACGCGCCTCAATATCCT 349
||||||| ||||||||||||| ||| || |||||| || | | | | | ||||||
Sbjct 115 TATCCTCCGCAAGGTTATCCTCCGCAGGGCTATCCT-CAAC--AAG-G--T---TATCCT 165
Query 350 CCACCACC-GCAGCATCAGCAACAACA-GAGCAGTCCTGGCT-TTCTAGAAGGATGTCTT 406
|| || || || || ||||| || || | ||||||||| | | || ||||||||||||
Sbjct 166 CCTCC-CCAACAACAACAGCAGCAGCATCA-CAGTCCTGG-TATGCTTGAAGGATGTCTT 222
Query 407 GCTGCTCTGTGTTGTTGCTGTCTCTTGGATGCTTGCTTCTGA 448
||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 223 GCTGCTCTGTGTTGTTGCTGTGTCTTGGACGCTTGCTTCTGA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5