BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41430.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483215 jgi|Araly1|483215|fgenesh2_kg.4__2275__AT2G41430.2 1029 0.0
> Ahg483215 jgi|Araly1|483215|fgenesh2_kg.4__2275__AT2G41430.2
Length=895
Score = 1029 bits (557), Expect = 0.0
Identities = 690/750 (92%), Gaps = 26/750 (3%)
Strand=Plus/Plus
Query 255 CCATGATCTAGAGTTTTGAGAATGGCGATGGTATCAGGAAGACGATCTACTCTAAACCCC 314
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CCAAGATCTAGAGATTTGAGAATGGCGATGGTATCAGGAAGACGATCTACTCTAAACCCC 222
Query 315 GACGCACCTCTTTTTATTCCGGCAGCTGTACGACAAGTGGAAGATTTCTCACCGGAGTGG 374
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GACGCACCTCTCTTTGTTCCGGCAGCTGTACGACAAGTGGAAGATTTCTCACCGGAGTGG 282
Query 375 TGGCAATTGGTGACAACTTCGACTTGGTACCCTGATTACTGGATCAGTCAGCAGCAGCAA 434
||||||||||| ||||||||||||||||||| ||| ||||||||||| | ||||| |||
Sbjct 283 TGGCAATTGGTCACAACTTCGACTTGGTACCATGACTACTGGATCAG-C--CAGCATCAA 339
Query 435 GG-CGCGGATGGTTTCTATGACAACGGAGAGAATGAGAATGGTGGAGGTCATATCGATGT 493
|| | | ||||||||||||||||| ||||||||||| ||||||||||| || | |||||
Sbjct 340 GGTC-CAGATGGTTTCTATGACAATGGAGAGAATGAAAATGGTGGAGGCCAGGTTGATGT 398
Query 494 AGCTGATCTTCTTCCAGAATCATTTGATTTTGATGATATGGAAGATTTCTTTGACACTGA 553
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 399 AGCTGATCTTCTTCCAGAATCATTTGATTTTGATGACATGGAAGATTTCTTTGAAACTGA 458
Query 554 TGCTGCTGAGTTTGATCAAGGATTCGATGGAAGAATGTATTACCAAGCACCTTCCGAATT 613
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 459 TGCTGCTGAGTTTGATCAAGGATTTGATGGACGAATGTATTACCAAGCACCTTCCGAATT 518
Query 614 TGGCTTTGGAAAGAATGGTGAGATGGTTAAGAAATCAAGTGGAAACAGGAGCCCGAGATC 673
|||||||||||||||||||||||||||| |||||||| ||| |||||||| |||| |||
Sbjct 519 CGGCTTTGGAAAGAATGGTGAGATGGTTAGGAAATCAACTGGTAACAGGAGTCCGAAATC 578
Query 674 GATTGTGGAACCAGCTAAGTATGCGGAAAAGCCAGCGAAATGGGGAAACCAGAGGGTTGC 733
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GATTGTGGAACCGGCAAAGTATGCGGAAAAGCCAGCGAAATGGGGAAACCAGAGGGTTGC 638
Query 734 TGCTGCTCCGAGAAACATCCACCAGCCTCGCTGAAGA-GATATGTTGTTAACTAGTCAGA 792
|||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 639 TGCT-C-CA-AGAAACATCCACCAGCCTCGCTGAAGAAGATATGTTGTTAACTAGTCAGA 695
Query 793 GAAGTCAGAGCAGTTCGGTCTGTGTATCTTTAGCCACCAC---TGTACCTTTGTAATTTT 849
| |||||||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 696 -A-GTCAGAGCAGTTTGGTCC-TGTATCTTTAGCCACCACCACTGTACCTTTGTAATTTT 752
Query 850 TAGTATTTGCTTCCACA-ACAAAAATCTGTAACTTTGTATCTTTATGATGTTCATTCTCA 908
||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 753 TAGTATTTGCTTCCACATA-AAAAATCTGTAACTTTGTACCTTTATGATGTTCATTCTCA 811
Query 909 AACTTGCT---ATCACaaaaatgtaaaaacataaaaaaaaaaaaaTGTAAACTTTGAAGA 965
| |||| | ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 812 A-CTTGTTGTTATCTCAAAAATGTAAAAACATAAAAAAAA-----TGTAAACTTTGAAGA 865
Query 966 GAAATGAGAACTAGAGTTTATTTCCTACCT 995
||||||||||||||||||||||||| ||||
Sbjct 866 GAAATGAGAACTAGAGTTTATTTCCCACCT 895
Score = 219 bits (118), Expect = 4e-56
Identities = 157/174 (90%), Gaps = 10/174 (6%)
Strand=Plus/Plus
Query 1 AGCTTCGTCACCGAACCTTACTTTATATATTAGTCCTTCTTCTTCTCATCTTCTCGCAAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AGCTTCGTCACCGAACCTTACTTTATATATTAGTCCTTCTTCTTCTCATCTTCTGGCAAC 60
Query 61 GTAGGTTCTGGTGAATGATCCTAATCCGTTTAGCTT-TTaaaaaaaTAAGAAGACATATT 119
|||||||||||||| |||||||||||||||| |||| ||||||| | | |||||||||||
Sbjct 61 GTAGGTTCTGGTGATTGATCCTAATCCGTTTTGCTTGTTAAAAAGA-A-GAAGACATATT 118
Query 120 T--ATCAACTTGATCAACTTGAGCAAGTTGCAGCAGATATTTTCCTCGGCCAAG 171
| ||||| | |||||||||||||| | |||||||||||||||| ||||||
Sbjct 119 TTTATCAA----A-CAACTTGAGCAAGTAGAAGCAGATATTTTCCTCAGCCAAG 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5