BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41445.1
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902139 jgi|Araly1|902139|Al_scaffold_0004_2789 891 0.0
> Ahg902139 jgi|Araly1|902139|Al_scaffold_0004_2789
Length=711
Score = 891 bits (482), Expect = 0.0
Identities = 616/678 (91%), Gaps = 19/678 (3%)
Strand=Plus/Plus
Query 1 ATGAAGTTGAAAGGGAGGCGAAGAGATTTGAC---GAAGAAGAAGGTGAGAGAGCTCTGC 57
||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 22 ATGAAGTTGAAGGGGAGGCGACGAGATTTGACGAAGAAGAAGAAGGTGAGAGAGCTCTGC 81
Query 58 GATTATTGCGGATTCTCTAGCGGCATCATTAGGTATGATGAACAAAGGCCACACGAACGA 117
||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 82 GATTATTGCGGATTCTCCAGCAGCACCATTAGGTATGATGAACAAAGGCCACACGAACGA 141
Query 118 GATCACGAAGCAGTGTCTATGGAGAATGAACTCAAGAGATTACGGCTTTTAACCAGGAGA 177
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 142 GATCACGAAGCAGTGTCTATGGAGAACGAACTCAAGAGATTACGGCTTTTGACCAGGAGA 201
Query 178 ATGACTTGTAAGGATCTCGATGGTCTGACTTTCCCCGAGCTGCTATCACTTAAAAGCCAT 237
|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||
Sbjct 202 ATGACTTGTAAGGATCTCGACGGTCTGACTTTCCCCGAGCTGCTATTACTTGAAAGCCAT 261
Query 238 CT-ACAGACTGCCTTGCTCATTGTGAAGGACCAAACGAAGAAGATAGAGCAGCTGCTTAA 296
| | ||||||||||||||||||||||||||| || |||||||||| | ||||||||||
Sbjct 262 TTGA-AGACTGCCTTGCTCATTGTGAAGGACCGAAGGAAGAAGATA-A--AGCTGCTTAA 317
Query 297 AGAAGATGATGGGTGGATGCTTATACGGAGGAAGGACGCAGAGGATGGTATGGGGAGAGA 356
||| ||||| |||||||||||||||||||||| || || ||| || |||||| |||
Sbjct 318 AGATGATGAA---TGGATGCTTATACGGAGGAAGG--GC-GATGATCGTGTGGGGATAGA 371
Query 357 GGTTTCTGTTCCCTGCAAATTCTCTACCAGCAGCACGGGTGAGAGACAAGGTGATGAAGC 416
|||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 372 GGTTACTGTTCCCTGCAAATTCTCTACCAGCAGCACGGGGGAGAGACAAGATGATGAAGC 431
Query 417 ACCAGCACCACCGC---TGTCGCAACTGCAGCTACAATTCGAGAGACGAAATGCTGAACC 473
||||||||| |||| ||||| |||| |||| | ||||||||||||||||||||||| |
Sbjct 432 ACCAGCACCGCCGCGGCTGTCGAAACTTCAGCGAGAATTCGAGAGACGAAATGCTGAAAC 491
Query 474 CATGATGATCGAATACGGGAGATTATGGCTGTTGAAGGAGAGAATGAACGGTAGACAGCT 533
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CATGATGATTGAATACGAGAGATTATGGCTGTTGAAGGAGAGAATGAACGGTAGACAGCT 551
Query 534 CGACGGTATGAA-CAATGCCGAGCTGGCCTTACTTCAAGCTAAGATAGTACATGGATTGC 592
||||||||||| || || |||||||| ||||||| ||| |||||||||| |||||||||
Sbjct 552 TGACGGTATGAATCA-TGGCGAGCTGGGCTTACTTGAAGTTAAGATAGTAAATGGATTGC 610
Query 593 AGGAGTTGCACGAGCATATGTATGCACCAACAATGGAAAAAATCGCTAAGAAGCGCAGAT 652
|||| |||| |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 611 AGGATTTGCTGGAGCATATGTATGCACCAACAAGGGAACAAATCGCTAAGAAGCGCAGAT 670
Query 653 ATCTGTTAAGAGAGGTTC 670
|||||||||||| ||||
Sbjct 671 CTCTGTTAAGAGATGTTC 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25123002303
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5