BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41450.1 Length=2064 Score E Sequences producing significant alignments: (Bits) Value Ahg902111 jgi|Araly1|902111|Al_scaffold_0004_2761 2278 0.0 > Ahg902111 jgi|Araly1|902111|Al_scaffold_0004_2761 Length=2934 Score = 2278 bits (1233), Expect = 0.0 Identities = 1380/1450 (95%), Gaps = 13/1450 (1%) Strand=Plus/Plus Query 429 ATCTTAGCTGCAATCACTTATCAAATAGTCCCTGCTGATACACAGTATGCTGAGATACCT 488 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 169 ATCTTAGCTGCAATCTCATATCAAATAGTCCCTGCTGATACACAGTATGCTGAGATACCT 228 Query 489 CTTGCTGCTGTAACATATACACACCAGAAAAAGGGATTTGGTAAGCTCGTCTATGAAGAA 548 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 229 CTTGCTGCTGTAACATATACACACCAGAAAAAGGGTTTTGGTAAACTCGTCTATGAAGAA 288 Query 549 TTAATGAAGAGGCTTCATAGTGTTGGCATTCGAACTATATATTGTTGGGCAGACAAAGAA 608 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 289 TTAATGAAGAGACTTCATAGTGTTGGCATCCGAACTATATATTGTTGGGCAGACAAAGAA 348 Query 609 TCTGAAGGATTCTGGCTTAAACAGGGGTTTATAAAATTAGCAGAGGTAGACCACAAAGGA 668 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 349 TCTGAAGGATTCTGGCTTAAACAGGAATTTATAAAATTAGCGGAGGTAGACCACAAAGGA 408 Query 669 AAAGCAAAGGGGTTGCACATTAAGTCTAATATTCGAAAAGCCTTGTGTTTTCCTGGCGGT 728 ||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 409 AAAGCAAGGGGGTTACACATCAAGTCTAATATTCGAAAAGCCTTGTGTTTTCCCGGCGGT 468 Query 729 TCAACTCTCATGCTTTCTCATCTGAACAAGGAA-----T-TT-AT--TTCAAACCTTGAG 779 |||||||||||||||||||||||||| |||||| | || || | ||||| ||||| Sbjct 469 TCAACTCTCATGCTTTCTCATCTGAAGAAGGAATCTTCTCTTAATCCTGCAAACATTGAG 528 Query 780 ATTTCCTCTTCATGGAAATATCAGTGTGAGGGATCTCCACTCTCGGCAAGAAATAATAGC 839 | | ||||||||||||||||||||||||| |||||||||||||| |||||||||||| || Sbjct 529 AGTCCCTCTTCATGGAAATATCAGTGTGAAGGATCTCCACTCTCAGCAAGAAATAATTGC 588 Query 840 ACAGGTCCTGTGACTGGAGATTCAGTTAAAC-TGAGAGAGAGCTTTGGTGAAAGCGTATA 898 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 589 ACAGGTCCTGTGACTGGAGATTCAGTTAAACTTG-GAGAGAGCTTTGGTGAAAGCGTATA 647 Query 899 TCTTGACTGTATCTCTGGTATCAGAAGTCCAATGGACTCGATCACAGGAAAGGAAAACAA 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 TCTTGACTGTATCTCTGGTATCAGAAGTCCAATGGACTCGATCACAGGAAAGGAAAACAA 707 Query 959 CAACGTGATCTCTGATCAAGCTACCACAGCTGACAGTGAGACCAAATGTTCAACACCAGG 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 CAACGTGATCTCTGATCAAGCTACCACAGCTGACAGTGAGACCAAATGTTCAACACCAGG 767 Query 1019 CTTAAAGAGATCTTGGGAAGCTTCATTGTCCTCTCTACAATCTAAAAGGATTCGGGCAAA 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 768 CTTAAAGAGATCTTGGGAAGCTTCATTGTCCTCTCTACAATCTAAAAGGATTAGGGCAAA 827 Query 1079 CAACAATAATAACTCTGAGATAGCAAAAACAGATTTGGCTCAGAGCTCTGCAAAGCAATC 1138 |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 828 CAACAATAATAACTCTGACATAGCAAAAATAGATTTGGCTCAGAGCTCTGCAAAGCAATT 887 Query 1139 GAAAGATGGTAATTCCTCCCAAGTAGATATAACCAAGGATTCCCTGCCCACAATCTGCAA 1198 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 888 GAAAGACGGTAATTCCTCCCAAGTAGATATAACCGAGGATTCCCTGCCCACAATCTGCAA 947 Query 1199 AAGAAACGACGTTGAACAATGTAGAATGGCAACTGGGATAGACATGGAAGCTCGTCCAAA 1258 ||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||| Sbjct 948 AAGAAACGATGTTGAACAATGCAGAATGGCGACTGGGATAAACATGGAAGCTCGTCCAAA 1007 Query 1259 TGGACAACACTATAGAATCTTGTTGATGGACATTTGTGATGAAAACAAGAGAGCTTGGTT 1318 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1008 TGGACAACACTATAGAATCTTGTTGATGGACATTTGTGATGAAAACAAGAAAGCTTGTTT 1067 Query 1319 AACAGAGGTAATAAGAAAACTTGGTGGTACTGTGACCTTGGATGGCACAACGAGCACGCA 1378 |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || Sbjct 1068 AACAGAGGTAATAAGAAAACTTGGTGGTGCTGTGACCTTGGATGGCACAATGAGCACACA 1127 Query 1379 TATTGTCACCGGAAAAGTCAGGAAAACTCTGAATCTCTGCACTGCTCTTTGCTCTGGGGC 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1128 TATTGTCACCGGAAAAGTCAGGAAAACTCTGAATCTCTGCACTGCTCTTTGCTCTGGGGC 1187 Query 1439 GTGGATAGTATCACCAAGTTGGTTAAAAGAAAGT-GTCCGAGAAGGAAGATTTGCTAATG 1497 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1188 TTGGATAGTATCACCAAGTTGGTTAAAAGAAAGTTG-CCGAGAAGGAAGATTTGCTAATG 1246 Query 1498 AAGCTTCACACATACTGCATGACGAAGACTACCAGTTGAAATATGATACTGATCTAAAAA 1557 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1247 AAGCTTCACACATACTGCACGACGAAGACTACCAGTTGAAATATGATACTGATCTAAAAA 1306 Query 1558 GCACAGTTCTTAGAGCAAAAGCTAGACCAAACTCGTTGCTAAAAGGATATGACATATGCG 1617 || |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1307 GCTCAGTGCTTAGAGCAAAAGCTAGACCAAACTTGTTGCTTAAAGGATATGACATATGCG 1366 Query 1618 TTGGACCTAACATTGAACTGCCTATCAAAACTTCATCTGCTATCATCAAATCTGCTGGTG 1677 ||||||| |||||||| ||||||| |||||||||| ||| |||||||||||||||||| Sbjct 1367 TTGGACCAAACATTGAGTTGCCTATTAAAACTTCATATGCGGTCATCAAATCTGCTGGTG 1426 Query 1678 GAAATGTGATAAGTGGAGTGAATAAGGTAAAGGAGGCGTCAAAAGCGATATACATAGGGT 1737 ||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| Sbjct 1427 GAAATATGATAAGTGGAGTGAATAAGGTAAAGGTGGCTTCAAAAACGATATACATAGGGT 1486 Query 1738 GCGAAGAAGACACAGTAGGGGCATTATTTGCAGCAAAGAAAGGAATTTGGACATTCAGCA 1797 ||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1487 GCGAAGAAGACACGGTGGGGGCATTATTTGCAGCAAAGAAAGGAGTTTGGACATTCAGCA 1546 Query 1798 GCGAATGGTTCATGAACTGTGTCATGAAGCAACAACTTGATCTTCAAGTTCCTCAGTTTG 1857 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1547 GCGAATGGTTAATGAACTGTGTCATGAAGCAACAACTTGATCTTCAAGTTCCTCAGTTTG 1606 Query 1858 TTGAGTCCTT 1867 |||||||||| Sbjct 1607 TTGAGTCCTT 1616 Score = 167 bits (90), Expect = 3e-40 Identities = 94/96 (98%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 183 GAGAAGGATAAAATCGTTTCTGATTATCCGAAAGAAGACATGTTTCTTCTTCTTAATCCT 242 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73 GAGAAGGATAAAACCGTTTCTGATTATCCGAAAGAAGACATGTTTCTTCTTCTTAATCCT 132 Query 243 CGGGATGAAGATGATTTTACCAAATCTCATCTCCAA 278 |||||||||||||| ||||||||||||||||||||| Sbjct 133 CGGGATGAAGATGAGTTTACCAAATCTCATCTCCAA 168 Score = 113 bits (61), Expect = 4e-24 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 33 ATGGCGCCAAAGAGAGCATCGCCGATGCAGTCTTCTCTGTACTCTATCGGTGATTACGAG 92 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 1 ATGGCGCCAAAGAGAGCATCGCCGATGCAGCCTTCTCTGTACCCTATCGGTAATTACGAG 60 Query 93 GTTGCAGTGGATG 105 || |||||||||| Sbjct 61 GTCGCAGTGGATG 73 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77627919310 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5