BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41450.1
Length=2064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902111 jgi|Araly1|902111|Al_scaffold_0004_2761 2278 0.0
> Ahg902111 jgi|Araly1|902111|Al_scaffold_0004_2761
Length=2934
Score = 2278 bits (1233), Expect = 0.0
Identities = 1380/1450 (95%), Gaps = 13/1450 (1%)
Strand=Plus/Plus
Query 429 ATCTTAGCTGCAATCACTTATCAAATAGTCCCTGCTGATACACAGTATGCTGAGATACCT 488
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 ATCTTAGCTGCAATCTCATATCAAATAGTCCCTGCTGATACACAGTATGCTGAGATACCT 228
Query 489 CTTGCTGCTGTAACATATACACACCAGAAAAAGGGATTTGGTAAGCTCGTCTATGAAGAA 548
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 229 CTTGCTGCTGTAACATATACACACCAGAAAAAGGGTTTTGGTAAACTCGTCTATGAAGAA 288
Query 549 TTAATGAAGAGGCTTCATAGTGTTGGCATTCGAACTATATATTGTTGGGCAGACAAAGAA 608
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 289 TTAATGAAGAGACTTCATAGTGTTGGCATCCGAACTATATATTGTTGGGCAGACAAAGAA 348
Query 609 TCTGAAGGATTCTGGCTTAAACAGGGGTTTATAAAATTAGCAGAGGTAGACCACAAAGGA 668
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 349 TCTGAAGGATTCTGGCTTAAACAGGAATTTATAAAATTAGCGGAGGTAGACCACAAAGGA 408
Query 669 AAAGCAAAGGGGTTGCACATTAAGTCTAATATTCGAAAAGCCTTGTGTTTTCCTGGCGGT 728
||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 409 AAAGCAAGGGGGTTACACATCAAGTCTAATATTCGAAAAGCCTTGTGTTTTCCCGGCGGT 468
Query 729 TCAACTCTCATGCTTTCTCATCTGAACAAGGAA-----T-TT-AT--TTCAAACCTTGAG 779
|||||||||||||||||||||||||| |||||| | || || | ||||| |||||
Sbjct 469 TCAACTCTCATGCTTTCTCATCTGAAGAAGGAATCTTCTCTTAATCCTGCAAACATTGAG 528
Query 780 ATTTCCTCTTCATGGAAATATCAGTGTGAGGGATCTCCACTCTCGGCAAGAAATAATAGC 839
| | ||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct 529 AGTCCCTCTTCATGGAAATATCAGTGTGAAGGATCTCCACTCTCAGCAAGAAATAATTGC 588
Query 840 ACAGGTCCTGTGACTGGAGATTCAGTTAAAC-TGAGAGAGAGCTTTGGTGAAAGCGTATA 898
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 589 ACAGGTCCTGTGACTGGAGATTCAGTTAAACTTG-GAGAGAGCTTTGGTGAAAGCGTATA 647
Query 899 TCTTGACTGTATCTCTGGTATCAGAAGTCCAATGGACTCGATCACAGGAAAGGAAAACAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TCTTGACTGTATCTCTGGTATCAGAAGTCCAATGGACTCGATCACAGGAAAGGAAAACAA 707
Query 959 CAACGTGATCTCTGATCAAGCTACCACAGCTGACAGTGAGACCAAATGTTCAACACCAGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CAACGTGATCTCTGATCAAGCTACCACAGCTGACAGTGAGACCAAATGTTCAACACCAGG 767
Query 1019 CTTAAAGAGATCTTGGGAAGCTTCATTGTCCTCTCTACAATCTAAAAGGATTCGGGCAAA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 768 CTTAAAGAGATCTTGGGAAGCTTCATTGTCCTCTCTACAATCTAAAAGGATTAGGGCAAA 827
Query 1079 CAACAATAATAACTCTGAGATAGCAAAAACAGATTTGGCTCAGAGCTCTGCAAAGCAATC 1138
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 828 CAACAATAATAACTCTGACATAGCAAAAATAGATTTGGCTCAGAGCTCTGCAAAGCAATT 887
Query 1139 GAAAGATGGTAATTCCTCCCAAGTAGATATAACCAAGGATTCCCTGCCCACAATCTGCAA 1198
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 888 GAAAGACGGTAATTCCTCCCAAGTAGATATAACCGAGGATTCCCTGCCCACAATCTGCAA 947
Query 1199 AAGAAACGACGTTGAACAATGTAGAATGGCAACTGGGATAGACATGGAAGCTCGTCCAAA 1258
||||||||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||
Sbjct 948 AAGAAACGATGTTGAACAATGCAGAATGGCGACTGGGATAAACATGGAAGCTCGTCCAAA 1007
Query 1259 TGGACAACACTATAGAATCTTGTTGATGGACATTTGTGATGAAAACAAGAGAGCTTGGTT 1318
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1008 TGGACAACACTATAGAATCTTGTTGATGGACATTTGTGATGAAAACAAGAAAGCTTGTTT 1067
Query 1319 AACAGAGGTAATAAGAAAACTTGGTGGTACTGTGACCTTGGATGGCACAACGAGCACGCA 1378
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 1068 AACAGAGGTAATAAGAAAACTTGGTGGTGCTGTGACCTTGGATGGCACAATGAGCACACA 1127
Query 1379 TATTGTCACCGGAAAAGTCAGGAAAACTCTGAATCTCTGCACTGCTCTTTGCTCTGGGGC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TATTGTCACCGGAAAAGTCAGGAAAACTCTGAATCTCTGCACTGCTCTTTGCTCTGGGGC 1187
Query 1439 GTGGATAGTATCACCAAGTTGGTTAAAAGAAAGT-GTCCGAGAAGGAAGATTTGCTAATG 1497
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1188 TTGGATAGTATCACCAAGTTGGTTAAAAGAAAGTTG-CCGAGAAGGAAGATTTGCTAATG 1246
Query 1498 AAGCTTCACACATACTGCATGACGAAGACTACCAGTTGAAATATGATACTGATCTAAAAA 1557
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 AAGCTTCACACATACTGCACGACGAAGACTACCAGTTGAAATATGATACTGATCTAAAAA 1306
Query 1558 GCACAGTTCTTAGAGCAAAAGCTAGACCAAACTCGTTGCTAAAAGGATATGACATATGCG 1617
|| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1307 GCTCAGTGCTTAGAGCAAAAGCTAGACCAAACTTGTTGCTTAAAGGATATGACATATGCG 1366
Query 1618 TTGGACCTAACATTGAACTGCCTATCAAAACTTCATCTGCTATCATCAAATCTGCTGGTG 1677
||||||| |||||||| ||||||| |||||||||| ||| ||||||||||||||||||
Sbjct 1367 TTGGACCAAACATTGAGTTGCCTATTAAAACTTCATATGCGGTCATCAAATCTGCTGGTG 1426
Query 1678 GAAATGTGATAAGTGGAGTGAATAAGGTAAAGGAGGCGTCAAAAGCGATATACATAGGGT 1737
||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||
Sbjct 1427 GAAATATGATAAGTGGAGTGAATAAGGTAAAGGTGGCTTCAAAAACGATATACATAGGGT 1486
Query 1738 GCGAAGAAGACACAGTAGGGGCATTATTTGCAGCAAAGAAAGGAATTTGGACATTCAGCA 1797
||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1487 GCGAAGAAGACACGGTGGGGGCATTATTTGCAGCAAAGAAAGGAGTTTGGACATTCAGCA 1546
Query 1798 GCGAATGGTTCATGAACTGTGTCATGAAGCAACAACTTGATCTTCAAGTTCCTCAGTTTG 1857
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 GCGAATGGTTAATGAACTGTGTCATGAAGCAACAACTTGATCTTCAAGTTCCTCAGTTTG 1606
Query 1858 TTGAGTCCTT 1867
||||||||||
Sbjct 1607 TTGAGTCCTT 1616
Score = 167 bits (90), Expect = 3e-40
Identities = 94/96 (98%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 183 GAGAAGGATAAAATCGTTTCTGATTATCCGAAAGAAGACATGTTTCTTCTTCTTAATCCT 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 GAGAAGGATAAAACCGTTTCTGATTATCCGAAAGAAGACATGTTTCTTCTTCTTAATCCT 132
Query 243 CGGGATGAAGATGATTTTACCAAATCTCATCTCCAA 278
|||||||||||||| |||||||||||||||||||||
Sbjct 133 CGGGATGAAGATGAGTTTACCAAATCTCATCTCCAA 168
Score = 113 bits (61), Expect = 4e-24
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 33 ATGGCGCCAAAGAGAGCATCGCCGATGCAGTCTTCTCTGTACTCTATCGGTGATTACGAG 92
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1 ATGGCGCCAAAGAGAGCATCGCCGATGCAGCCTTCTCTGTACCCTATCGGTAATTACGAG 60
Query 93 GTTGCAGTGGATG 105
|| ||||||||||
Sbjct 61 GTCGCAGTGGATG 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77627919310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5