BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41451.1
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902111 jgi|Araly1|902111|Al_scaffold_0004_2761 1969 0.0
Ahg898661 jgi|Araly1|898661|Al_scaffold_0005_2627 1064 0.0
Ahg935015 jgi|Araly1|935015|scaffold_403003.1 832 0.0
> Ahg902111 jgi|Araly1|902111|Al_scaffold_0004_2761
Length=2934
Score = 1969 bits (1066), Expect = 0.0
Identities = 1184/1243 (95%), Gaps = 0/1243 (0%)
Strand=Plus/Plus
Query 63 CTTCATCAGATTCGTCTTACTCTCGGAAATTCTTACTCATCACCTTTCTTCCTCTTTCCT 122
|||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1685 CTTCATCAGATTCGGCTTCCTCTCGGATTTTGTTACTCATCACCTTTCTTCCTCTTTCCT 1744
Query 123 TGGCCTGCTTGGCCTTCCTCCTCCAATGGCGAAGCGGAGTCAACGATTCCGTTACGCAGT 182
| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1745 TAGCCTGTTTTGCCTTCCTCCTCCAATGGCGAAGCGGAATCAACGATTCCGTTACGCAGT 1804
Query 183 GGTTTGATGATAACTATCCGTTCCCAGGAATGGCCACTGTCTCCGAGAAACGTTCTCTTC 242
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1805 GGTTCGATGATAACTATCCGTTCCCAGGAATGGCCACCGTCTCCGAGAAACGTTCCCTTC 1864
Query 243 GTTCTGATTCGAGCTGCGTTTCTCTTCTGGGTCAGAGCCGTACGCAAGCGTTTCCTTATC 302
| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1865 GCTCTGATCCGAGCTGCGTTTCTCTTCTGGGTCAGAGTCGTACGCAATCGTTTCCTTATC 1924
Query 303 TCCGAGATTTGAAGCTTGATCACAAGCCCGATCTTAAACCTAGGATATGTATAACGACGA 362
||||||||| |||||||||||||||||| ||||| ||||||| ||||||||| || ||||
Sbjct 1925 TCCGAGATTGGAAGCTTGATCACAAGCCTGATCTCAAACCTAAGATATGTATTACTACGA 1984
Query 363 GCACTTCTGCTGGGTTAGAGCAGACATTGCCATGGATATTCTATCACAAGGTCATTGGAG 422
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1985 GCACTTCTGCTGGATTAGAGCAGACATTGCCATGGATTTTCTATCACAAGGTCATTGGAG 2044
Query 423 TTGAAACTTTTTATCTATTTGTTGAAGGCACTGCTGCTTCCCCAAACGTTTCTCGAGTTT 482
|| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 2045 TTTCAACTTTTTATCTATTCGTTGAAGGCACTGCTGCTTCCCCAAATGTGTCTCGAGTTT 2104
Query 483 TGGAGACAATCCCTGGTGTAAATGTTATATACAGGACAAGAGAGTTAGAAGAAGAACAAG 542
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2105 TGGAGACAATCCCTGGTGTAAATGTTATATACAGAACAAGAGAGTTAGAAGAAGAACAAG 2164
Query 543 CTAAAAGCCGGATATGGAATGAGACTTGGTTGGAGAAGTTTTTCTACAAACCGTGTAATT 602
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2165 CTAAAAGCCGGATATGGAATGAGACCTGGTTGGAGAAGTTTTTCTACAAACCATGTAATT 2224
Query 603 ACGAATTATTCGTCAAACAAAACTTGAATATGGAAATGGCTATCACCATGGCAAGGGATG 662
||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 2225 ACGAATTATTCGTGAAACAAAACCTGAATATGGAAATGGCTATCACTATGGCAAGGGATG 2284
Query 663 CTGGTATGGACTGGATACTGCATCTTGATACTGATGAGCTTGTACATCCTTCTGGAACCC 722
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2285 CTGGTATGGAGTGGATACTGCATCTTGACACTGATGAGCTTGTACATCCTTCTGGAACCC 2344
Query 723 GTGAATATTCCTTGAGAAATTTGCTCAGAGATGTTCCTGCAGATGTGGATGAAGTTATCT 782
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2345 GTGAATATTCCTTGAGAAATTTGCTCAGAGATGTTCCTGCAGATGTGGATGCAGTTATCT 2404
Query 783 TTACAAATTACGAGAGCAGCGTTGAGCGAGATGATATCAAGGAACCTTTCACTGAAGTAT 842
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 2405 TTACAAATTATGAGAGCAGCATTGAGCGAGATGATATCAAGGAACCTTTCACTGAGGTAT 2464
Query 843 CAATGTTCAAGAAGAATTTTAAACATCTTCCTAGAGAAGTTTACTATGGAAACTATAAAG 902
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2465 CAATGTTCAAGAAGAATTTCAAACATCTTCCTAGAGATGTTTACTATGGAAACTATAAAG 2524
Query 903 AGGCAACTCGTGGCAATCCAAACTATTTTCTTACCTATGCAAATGGGAAATCCGCTGCTC 962
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2525 AGGCAACTCGTGGCAATCCGAACTATTTTCTTACCTATGCAAATGGGAAATCCGCTGCTC 2584
Query 963 GGATTCAAGACCATCTTCGGCCCAATGGTGCTCATCGCTGGCACAACTACAAGACGTATC 1022
||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||| |
Sbjct 2585 GGATTCAAGACCATCTTCGGCCCAATGGTGCTCATCGATGGCACAATTACATGAAGTACC 2644
Query 1023 CAAACATCAAGGAACTAGACGAAGCTGCGATTCTTCACTACACTTACTCGAAATTTTCAG 1082
||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2645 CAAACGTCATGGAACTAGGGGAAGCTGCGATTCTTCACTACACTTACTCGAAATTTTCAG 2704
Query 1083 ATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACaaaaaaaGATGTCAAGAGAT 1142
||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 2705 ATCTTACTTCAAGACATGATCGATGTGGCTGCAAACCAACTAAAGAAGATGTCAAGAGAT 2764
Query 1143 GTTTCATGCTAGACTTTGACAGAGCCGCATTCATCATTGCTTCAACTTCAACTTCAGAGG 1202
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2765 GTTTCATGCTAGAGTTTGACAGAGCCGCATTCATCATTGCTTCAACTTCAACTTCAGAGG 2824
Query 1203 AAATGCTCCAATGGTACAGAGAAAGAGTTGTATGGACTGACGATAATTTGATCCTAAAAC 1262
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 2825 AAATGCTCCAATGGTACAGAGAAAAAGTTGTATGGACTGACGAAAATTTGATCCTAAAAC 2884
Query 1263 TTCTTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATGGT 1305
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2885 TTCTTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATGGT 2927
> Ahg898661 jgi|Araly1|898661|Al_scaffold_0005_2627
Length=1479
Score = 1064 bits (576), Expect = 0.0
Identities = 1087/1324 (82%), Gaps = 73/1324 (6%)
Strand=Plus/Plus
Query 92 TTCTTACTCATCAC-CTTTCTTCCTCTTTCCT-TGGCCTGCT-TGGCCTTCCTCCTCCAA 148
||||| ||| | || | |||||||||| | || | ||||| | | |||||| | ||||||
Sbjct 88 TTCTTGCTCGTGACGC-TTCTTCCTCTCT-CTCTCGCCTG-TCTCGCCTTCGTTCTCCAA 144
Query 149 TGGCGAAGCGGAGTCAACGATTCC-GTTACGCAG-TGGTTTGATGATAACTATC-C--G- 202
||||| ||||| || |||| || ||||||| | ||| | || | | | ||| | |
Sbjct 145 TGGCGTGGCGGACTCGACGA-CCCGGTTACGC-GTTGG-TCAAT-AGATC-ATCACGAGT 199
Query 203 TTCCCAGGAATGGCCACTGTCTCC--GAGAAAC-G---TT-C-TC-TTC-G-TTCTGATT 251
||||| ||||||| || | || ||||||| | || | || ||| | ||||||||
Sbjct 200 TTCCC-GGAATGGTTAC-AAC-CCAAGAGAAACGGTCCTTGCGTCGTTCAGTTTCTGATT 256
Query 252 CGAGCTGCGTTTCTCTTCTGGGTCAGAGCCGTACGCAAGCGTTTCCTTATCTCC-GAGAT 310
|| | |||||| |||||| |||||||| ||| | | ||||||||||| ||| || ||
Sbjct 257 CGGGTTGCGTTGATCTTCTAGGTCAGAGTCGTGCCCCTTCGTTTCCTTATTTCCGGA-AT 315
Query 311 TTGAAGCTTGATCACAAGC-CCGATCTTAAACCTAGGATATGTATAACGACGAGCACTTC 369
| ||| ||||| || | | | ||||| |||||||||||||| || || || ||||||||
Sbjct 316 TGGAAATTTGATTACGA-CTCGGATCTGAAACCTAGGATATGCATTACAACAAGCACTTC 374
Query 370 TGCTGGGTTAGAGCAGACATTGCCATGGATATT-CTATCACAAGGTCATTGGAGTTGAAA 428
|||||| |||||||| ||| |||||||||| || || |||||| || ||||||||| ||
Sbjct 375 TGCTGGCTTAGAGCAAACACTGCCATGGAT-TTACTTTCACAAAGTTATTGGAGTTTCAA 433
Query 429 CTTTTTATCTATTTGTTGAAGGCACTGCTGCTTCCCCAAACGTTTCTCGAGTTTTGGAGA 488
| ||||||||||||||||| || | ||||| || ||||| || ||||||||||||||||
Sbjct 434 CATTTTATCTATTTGTTGAGGGGAAGGCTGCATCTCCAAATGTGTCTCGAGTTTTGGAGA 493
Query 489 CAATCCCTGGTGTAAATGTTATATACAGGACAAGAGAGTTAGAAGAAGAACAAGCTAAAA 548
| |||||||||||||| |||||| ||||||||| |||||| |||||| |||| |||||||
Sbjct 494 CCATCCCTGGTGTAAAAGTTATACACAGGACAAAAGAGTTGGAAGAAAAACAGGCTAAAA 553
Query 549 GCCGGATATGGAATGAGACTTGGTTGGAGAAG-TTTTTCTACAAACCGTGTAATTACGAA 607
||||||| ||||||||||||||| || | || || ||||||||||||||||| || |||
Sbjct 554 GCCGGATTTGGAATGAGACTTGGCTGTCG-AGCTTCTTCTACAAACCGTGTAACTATGAA 612
Query 608 TTATTCGTCAAACAAAACTTGAATATGGAAATGGCTATCACCATGGC-AAGGGATGCTGG 666
|||||||| ||||| |||||| ||||||||||| ||||||||||| | |||||||||
Sbjct 613 TTATTCGTGAAACAGTCCTTGAACATGGAAATGGCAATCACCATGGCTCA-GGATGCTGG 671
Query 667 TATGGACTGGATACTGCATCTTGATACTGATGAGCTTGTACATCCTTCTGGAACCCGTGA 726
|||||| |||||| | |||||||| || ||||||||| |||||||||||||||||| |||
Sbjct 672 TATGGAATGGATAATTCATCTTGACACCGATGAGCTTATACATCCTTCTGGAACCCATGA 731
Query 727 ATATTCCTTGA-GAAATTTGCTCAGAGATGTTCCTGCAGATGTGGATGA-AGTTATCTTT 784
||||| ||| | | || ||||| || || || ||||||| || ||| | ||||||||||
Sbjct 732 ATATT-CTTTACGGAAGTTGCTGGGAAATATTTCTGCAGACGTAGAT-ATAGTTATCTTT 789
Query 785 ACAAATTACGAGAGCAGCGTTGAGCGAGATGATATCAAGGAACCTTTCA-CTGAAGTATC 843
||||||| |||||||||||||||||||||||||||| ||||||||| | | || |||||
Sbjct 790 CCAAATTATGAGAGCAGCGTTGAGCGAGATGATATCAGGGAACCTTTTAGC-GAGGTATC 848
Query 844 AATGTTCAAGAAGAATTTTAAACATCTTCCT-AGAGAAGTTTACTATGGAAACTATAAAG 902
||||||||||||||||| | | |||||| || ||||| || |||| ||||||||||||||
Sbjct 849 AATGTTCAAGAAGAATTATGACCATCTT-CTGAGAGATGTCTACTTTGGAAACTATAAAG 907
Query 903 AGGCAACTCGTGGCAATCCAAACTATTTTCTT-ACCTATGCAAATGGGAAATCCGCTGCT 961
| || |||||||| ||||||||||| |||||| ||||||| |||||||||| | |||||
Sbjct 908 ACGCCACTCGTGGAAATCCAAACTA-TTTCTTAACCTATGGAAATGGGAAAGCTGCTGCC 966
Query 962 CG-GATTCAAGACCATCTTCGGCCCAATGGTGCTCATCGCTGGCACAACTACAAG-ACGT 1019
|| | |||| ||||||||||| ||||||||||||||||| |||||||||||| || | |
Sbjct 967 CGTG-TTCAGGACCATCTTCGTCCCAATGGTGCTCATCGATGGCACAACTAC-AGAAAG- 1023
Query 1020 A-TCCAAACATCAAGG---AACTAGACGAAGCTG-CGATTCTTCACTACACTTACT-CGA 1073
| ||| || || ||| ||||||| ||||||| || | || ||||||||||| | | |
Sbjct 1024 AGTCC-AA-AT-GAGGTCAAACTAGAAGAAGCTGCCG-TGCTGCACTACACTTA-TCCCA 1078
Query 1074 AATTTTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACaaaaaaaGATG 1133
|||||||||||||||||||||||||||||| |||||||| || || || ||| ||||
Sbjct 1079 GATTTTCAGATCTTACTTCAAGACGTGATCGTTGTGGCTGTAAGCCCACTAAAGTGGATG 1138
Query 1134 TCAAGAGATGTTTCATGCTAGACTTTGACAGAGCCGCATTCATCATTGCTTCAACTTCAA 1193
||||||||||||||||||| || ||||||||||| ||||| || ||||||||||| | |
Sbjct 1139 TCAAGAGATGTTTCATGCTGGAGTTTGACAGAGCTGCATTTATTATTGCTTCAACCGCGA 1198
Query 1194 CTTCAGAGGAAATGCTCCAATGGTACAGAGAA-AGAGTTGTATGGACTGACGATAATTTG 1252
||||||||||||||| |||||||||||||| | ||||| |||||||| || || |||
Sbjct 1199 GTTCAGAGGAAATGCTTCAATGGTACAGAGAGCAT-GTTGTGTGGACTGATGAAAAATTG 1257
Query 1253 ATCCTAAAACTTC-TTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATGGTTATAAT 1311
| | ||||| | ||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1258 AAGTTGAAACT-CATTAGGAAGGGAATTCTGACCCGCATTTATGCCCCCATGGTTATAAT 1316
Query 1312 CCAAGAGCTAAGAGAAGCCGGTGTTTTCAGCTCAGTGGTAA-CTTCAGCTCATATGTCTC 1370
|||||||||||||||||| |||||||| ||||| ||||||| | ||||||| |||||||
Sbjct 1317 CCAAGAGCTAAGAGAAGCGGGTGTTTTTAGCTCTGTGGTAATCG-CAGCTCACATGTCTC 1375
Query 1371 TCTC 1374
||||
Sbjct 1376 TCTC 1379
> Ahg935015 jgi|Araly1|935015|scaffold_403003.1
Length=931
Score = 832 bits (450), Expect = 0.0
Identities = 499/523 (95%), Gaps = 2/523 (0%)
Strand=Plus/Plus
Query 896 TATAAAGAGGCAACTCGTGGCAATCCAAACTATTTTCTTACCTATGCAAATGGGAAATCC 955
|||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 258 TATAAAGAGGCAACTCGTGGCAATCCGAACTATTTTCTAAGCTATGCAAATGGGAAATCC 317
Query 956 GCTGCTCGGATTCAAGACCATCTTCGGCCCAATGGTGCTCATCGCTGGCACAACTACAAG 1015
|| |||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |
Sbjct 318 GCCGCTCGGATTCAAGACCATCTTCAGCCCAATGGTGCTCATCGATGGCTCAACTACATG 377
Query 1016 ACGTATCCAAACATCAAGGAACTAGACGAAGCTGCGATTCTTCACTACACTTACTCGAAA 1075
| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 378 AAGTACCCAAACATCATGGAACTAGGCGAAGCTGCGATTCTTCACTACACTTACTCGAAA 437
Query 1076 TTTTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACaaaaaaaGATGTC 1135
|| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 438 TTCTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACTAAAGAAGATGTC 497
Query 1136 AAGAGATGTTTCATGCTAGACTTTGACAGAGCCGCATTCATCATTGCTTCAACTTCAACT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AAGAGATGTTTCATGCTAGACTTTGACAGAGCCGCATTCATCATTGCTTCAACTTCAACT 557
Query 1196 TCAGAGGAAATGCTCCAATGGTACAGAGAAAGAGTTGTATGGACTGACGATAATTTGATC 1255
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 558 TCAGAGGAAATGCTCCAATGGTACAGAGAAAGAGTTGTATGGACTGACGACAATTTGATC 617
Query 1256 CTAAAACTTCTTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATGGTTATAATCCAA 1315
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CTAAAACTTGTTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATGGTTATAATCCAA 677
Query 1316 GAGCTAAGAGAAGCCGGTGTTTTCAGCTCAGTGGTAACTTCAGCTCATATGTCTCTCTCA 1375
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 678 GAGCTAAGAGAAGCCGGTGTTTTCAGCTCAGTGGTAAATTCAGCTCACATGTCTCTCTCA 737
Query 1376 AAGAATAGAAGCAACTCTTCAACCTCAAGCAACTACTAG-GAA 1417
| |||||||||||||||||||||||||| || |||||| |||
Sbjct 738 AGGAATAGAAGCAACTCTTCAACCTCAAA-AATTACTAGAGAA 779
Score = 296 bits (160), Expect = 3e-79
Identities = 195/212 (92%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 287 CAAGCGTTTCCTTATCTCCGAGATTTGAAGCTTGATCACAAGCCCGATCTTAAACCTAGG 346
||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
Sbjct 39 CAATCGTTTCCTTATCTCCGAGATTGGAAGCTTGATCACAAGCCTGATCTTAAACCTAAG 98
Query 347 ATATGTATAACGACGAGCACTTCTGCTGGGTTAGAGCAGACATTGCCATGGATAT-TCTA 405
|||||||||| |||||||||||||||||| ||||||| ||||||||||||||| | ||||
Sbjct 99 ATATGTATAAGGACGAGCACTTCTGCTGGATTAGAGCCGACATTGCCATGGAT-TGTCTA 157
Query 406 TCACAAGGTCATTGGAGTTGAAACTTTTTATCTATTTGTTGAAGGCACTGCTGCTTCCCC 465
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 158 TCACAAGGTCATTGGAGTTTCCACTTTTTATCTATTTGTTGAAGGCACTGCTACTTCCCC 217
Query 466 AAACGTTTCTCGAGTTTTGGAGACAATCCCTG 497
||| || ||||||||||| ||||| |||||||
Sbjct 218 AAATGTGTCTCGAGTTTTTGAGACCATCCCTG 249
Score = 117 bits (63), Expect = 2e-25
Identities = 104/122 (85%), Gaps = 9/122 (7%)
Strand=Plus/Plus
Query 1399 CTCAAGCAACTACTAGGAAGGTGTTGGAGTTTGATCTTG----T-T-G--G-TGAATCTT 1449
||||||||||||||||||||||||||||||||||||||| | | | | |||||||
Sbjct 784 CTCAAGCAACTACTAGGAAGGTGTTGGAGTTTGATCTTGAGGATCTTGATGATGAATCTC 843
Query 1450 AAGCAGTATCAGCGATACCACCGAAAGCATCTCCAGGCTTGGAAAAAATCCAAAATGTTT 1509
| ||| |||| | |||||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 844 CATCAGCATCACCTATACCACCGAAATCATCTCCAGGATTGGAAACAATCCAAAATGTTT 903
Query 1510 AA 1511
||
Sbjct 904 AA 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5