BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41460.1
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483223 jgi|Araly1|483223|fgenesh2_kg.4__2283__AT2G41460.1 2287 0.0
Ahg483247 jgi|Araly1|483247|fgenesh2_kg.4__2307__AT2G41460.1 599 2e-170
> Ahg483223 jgi|Araly1|483223|fgenesh2_kg.4__2283__AT2G41460.1
Length=1814
Score = 2287 bits (1238), Expect = 0.0
Identities = 1383/1452 (95%), Gaps = 14/1452 (1%)
Strand=Plus/Plus
Query 338 GAAACTTGGGGTACCTGTGAAAGGACGCAAACAAGAACTTATCTCAACTTTACGACTTCA 397
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 366 GAAACTTGGGCTACCTGTGAAAGGACGCAAACAAAAACTTATCTCAACTTTACGACTTCA 425
Query 398 TATGGACAGCAATTTACCTGATCAAAAGGAAACTTCTTCGTCCACCCGTTCGGATAGTGT 457
|||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 426 TATGGACAGCAATTTACCTGATCAAAAGGAAACTACTTCGTCCACCCGTTCAGAAAGTGT 485
Query 458 CACCATCAAAAGAAAGATCAGCAACAGGGAAGAGCCTACTGAAGATGAATGCACTAACTC 517
||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 486 CACGATCAAAAGAAAGATCAGAAACAGGGAAGAGCCTACTGAAGATGACTGCAGTAACTC 545
Query 518 TGAAGCTTATGACATTGAACACGGAGAAAAAAGAGTAAAACAGTCTACTGAGAAAAACTT 577
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 546 TGAAGCTTATGGCACTGAACAAGGAGAAAAAAGAGTAAAACAGTCTACTGAGAAAAACTT 605
Query 578 GAAAGCTAAAGTTTCTGCGAAAGCTATCGCGAAAGAACAGAAGTCATTGATGAGAACAGG 637
|||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||
Sbjct 606 GAAAGCTAAAGTTTCTGCGAAAGCCATCTCGAAAGAACAGAAGTCATTGACAAAAACAGG 665
Query 638 TAAGCAGCAAATTCAGTCAAAAGAAGAAACATCATCGACCATCTCTAGTGAATTACTGAA 697
||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||
Sbjct 666 TAAGCAGCAAATTCATTCAAAAGAGGAAGCATCATCGACCATCTCTAGTGTATTACTGAA 725
Query 698 AACTGAAGAAATTATCTCATCCCCGAGTCAAAGTGAACCGTGGACTGTACTTGCTCATAA 757
| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 726 ACCTGAAGAAATGATCTCATCCCTGAGTCAAAGTGAACCGTGGACTGTACTTGCTCATAA 785
Query 758 GAAGCCTCAGAAGGACTGGAAAGCTTACAACCCAAAGACAATGAGACCTCCCCCTCTACC 817
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 786 GAAGCCTCAGAAGGACTGGAAAGCTTATAACCCAAAGACAATGAGACCTCCCCCTCTACC 845
Query 818 AGAGGGTACCAAATGTGTGAAAGTTATGACTTGGAATGTTAATGGACTGAGAGGATTGTT 877
|||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 846 AGAGGGTACCAAGTGTGTGAAGGTTATGACTTGGAATGTTAATGGACTGAGAGCATTGTT 905
Query 878 GAAGTTTGAGAGCTTCTCTGCTCTGCAGCTTGCCCAAAGAGAAAATTTTGACATCTTGTG 937
|||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 906 GAAGTTAGAGAGCTTCTCTGCTCTGCAGCTTGCGCAAAGAGAAAACTTTGATATCTTGTG 965
Query 938 CTTGCAGGAGACTAAACTCCAGGTGAAA-GATGTTGAGGAAATTAAGAAAACTCTTATTG 996
|||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||
Sbjct 966 CTTGCAGGAGACTAAACTCCAGGT-AAAGGATGTTGAGGAAATCAAGAATACTCTTATTG 1024
Query 997 ATGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCAAAACTTGGCTACTCTGGAACTG 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 ATGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCAAAACTTGGCTACTCTGGAACTG 1084
Query 1057 CAATAATCTCACGGATAAAACCACTCTCAGTTAGATATGGTACTGGTCTATCTGG-TCA- 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1085 CAATAATCTCACGGATAAAACCACTCTCAGTTAGATATGGTACTGGTCTATCTGGATCAG 1144
Query 1115 -T---GACACGGAAGGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATA 1170
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 ATCATGACATGGAAGGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATA 1204
Query 1171 CTTATGTCCCTAATTCCGGAGATGGATTAAAAAGACTGTCATACAGGATCGAAGAATGGG 1230
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1205 CTTACGTCCCTAATTCCGGAGATGGCTTAAAAAGACTGTCATACAGGATCGAAGAATGGG 1264
Query 1231 ATCGAACCCTCAGCAATCACATCAAAGAGCTGGAGAAGTCTAAGCCTGTAGTCTTGACGG 1290
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 1265 ATCGAACCCTCAGCAACCATATCAAAGAGCTGGAAAAGTCTAAGCCTGTAGTCTTGACGG 1324
Query 1291 GTGATCTAAACTGTGCTCATGAAGAAATTGACATCTTCAATCCTGCGGGGAACAAAAGAA 1350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1325 GTGATCTAAACTGTGCTCATGAAGAAATTGACATCTTCAATCCTGCGGGGAACAAAAGGA 1384
Query 1351 GTGCTGGTTTTACAATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTGTTAGACAAGGGAT 1410
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1385 GTGCTGGTTTTACAATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTCTTAGACAAGGGAT 1444
Query 1411 TTGTAGATACCTTTAGAAAACAACATCCTGGTGTTGTCGGTTACACTTATTGGGGTTATC 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TTGTAGATACCTTTAGAAAACAACATCCTGGTGTTGTCGGTTACACTTATTGGGGTTATC 1504
Query 1471 GCCATGGTGGCCGCAAAACCAACAAAGGATGGAGACTGGACTACTTCTTGGTGTCCCAAT 1530
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1505 GCCATGGTGGCCGCAAAACCAACAGAGGATGGAGACTGGACTACTTCTTGGTGTCCGAAT 1564
Query 1531 CAATTGCGGCCAATGTCCATGATTCTTACATCCTCCCTGATATCAATGGAAGTGATCATT 1590
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 CAATTGCAGCCAATGTCCATGATTCTTACATCCTCCCTGATATCAATGGAAGTGATCATT 1624
Query 1591 GCCCCATTGGCCTTATTCTCAAGCTCTGATTTGTTCAAAATTTCACCATTCCCAGCTTTT 1650
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1625 GCCCCATTGGCCTTATTCTCAAGCTCTGATTTATTCAAAGTTTCACCATTCCCAGCTTTT 1684
Query 1651 T-G-CTAAA-GTCTTGAGTAGATTGTAGCTAGAGAGTCACATGTTTTGCTTCTAGAGAGA 1707
| | ||||| ||||| ||||| || |||||||||| ||||| |||||||||||| ||| |
Sbjct 1685 TTGGCTAAAAGTCTTTAGTAGCTTTTAGCTAGAGATTCACAGGTTTTGCTTCTACAGAAA 1744
Query 1708 GCTTGCTCATGTAAAAATATGGAATAATATATCTATCAGTAAACAGGCTCCAAACAA-TC 1766
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1745 GCTTGGTCATGTAAAA-TATGGAATAATATATCTATCAGTAAACAGGCTCCAAACAAAT- 1802
Query 1767 TGAGTCTTGTCC 1778
||||||||||||
Sbjct 1803 TGAGTCTTGTCC 1814
> Ahg483247 jgi|Araly1|483247|fgenesh2_kg.4__2307__AT2G41460.1
Length=1444
Score = 599 bits (324), Expect = 2e-170
Identities = 360/377 (95%), Gaps = 4/377 (1%)
Strand=Plus/Plus
Query 1125 GGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATACTTATGTCCCTAAT 1184
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 844 GGGCTTATTGTAACTGCTGAATTCGACTCCTTCTATTTGATAAATACTTATGTCCCTAAT 903
Query 1185 TCCGGAGATGGATTAAAAAGACTGTCATACAGGATCGAAGAATGGGATCGAACCCTCAGC 1244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TCCGGAGATGGCTTAAAAAGACTGTCATACAGGATCGAAGAATGGGATCGAACCCTCAGC 963
Query 1245 AATCACATCAAAGAGCTGGAGAAGTCTAAGCCTGTAGTCTTGACGGGTGATCTAAACTGT 1304
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 964 AATCACATCAAAGAGCTGGAAAAGTCTAAGCCTGTAGTCTTGACGGGTGATCTAAATTGC 1023
Query 1305 GCTCATGAAGAAATTGACATCTTCAATCCTGCGGGGAACAAAAGAAGTGCTGGTTTTACA 1364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GCTCATGAAGAAATTGACGTCTTCAATCCTGCGGGGAACAAAAGAAGTGCTGGTTTTACA 1083
Query 1365 ATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTGTTAGACAAGGGATTTGTAGATACCTTT 1424
|||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||
Sbjct 1084 ATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTCTTAGCCAAGGGCTTTGTAGATACATTT 1143
Query 1425 AGAAAACAACATCCTGGTGTTGTCGGTTACACTTATTGGGGTTATCGCCAT----GGTGG 1480
||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1144 AGAAAGCAACATCTTGGTGTTGTCGGTTACACTTATTGGGGTTATCGCCATCCATGGTGG 1203
Query 1481 CCGCAAAACCAACAAAG 1497
|||||||||||||||||
Sbjct 1204 CCGCAAAACCAACAAAG 1220
Score = 492 bits (266), Expect = 4e-138
Identities = 382/433 (88%), Gaps = 28/433 (6%)
Strand=Plus/Plus
Query 645 CAAATTCAGTC-AAAAGAAGAAACATCATCGACCATCTCTAGTGAATTACTGAAAACTGA 703
|||||||| || |||||| ||| ||||||||| ||||||||||||||| |||||||| |
Sbjct 417 CAAATTCATTCAAAAAGAGGAAGCATCATCGATCATCTCTAGTGAATTTCTGAAAACCAA 476
Query 704 AGAAATTATC-TCATCCCCGAGTCAAA-GT--GAACCGTGGACTGTACTTGCTCATAAGA 759
|||||| ||| | |||||||||||||| | ||||| ||| ||||||||||||||| ||
Sbjct 477 AGAAATAATCGT-ATCCCCGAGTCAAACCTCAGAACCCTGGGCTGTACTTGCTCATACGA 535
Query 760 AGCCTCAGAAGGACTGGAAAGCTTACAACCCAAAGACAATGAGACCTCCCCCTCTACCAG 819
||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct 536 AGCCTCAGAAGGACTGGAAAGCTTATAACCCAAAGACAATGAGA---CCCCC-CTACCAG 591
Query 820 AGGGT-ACCAAATGTGTGAAAGTTATGACTTGGAATGTTAATGGACTGAGAGGATTGTTG 878
||| | ||| || || | || | ||| ||||||||| |||||| |||||||
Sbjct 592 AGGATAACC-AA---GT----G---TG---T-GAAGGTTAATGGATTGAGAGCATTGTTG 636
Query 879 AAGTTTGAGAGCTTCTCTGCTCTGCAGCTTGCCCAAAGAGAAAATTTTGACATCTTGTGC 938
||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct 637 AAGTTAGAGAGCTTCTCTGCTCTGCAGCTTGCCCAAAGAAAAAATATTGATATCTTGTGC 696
Query 939 TTGCAGGAGACTAAACTCCAGGTGAAA-GATGTTGAGGAAATTAAGAAAACTCTTATTGA 997
||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 697 TTGCAGGAGACTAAAATCCAGGT-AAAGGATGTTGAGGAAATTAAGAAAACTCTTATTGA 755
Query 998 TGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCAAAACTTGGCTACTCTGGAACTGC 1057
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 756 TGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCGAAACTTGGCTACTCTGGAACTGC 815
Query 1058 AATAATCTCACGG 1070
|||||||||||||
Sbjct 816 AATAATCTCACGG 828
Score = 435 bits (235), Expect = 7e-121
Identities = 331/374 (89%), Gaps = 19/374 (5%)
Strand=Plus/Plus
Query 63 TTTCTGGTGGTGCCTCTTAGGAGTTTGAGAGTTGGTTCATCTTTCGTTGGAGTTGGAGTG 122
||||||||||||||| |||||||||| || |||||||||||| ||||||| ||||||||
Sbjct 1 TTTCTGGTGGTGCCTATTAGGAGTTTAAGCGTTGGTTCATCTATCGTTGGTGTTGGAGTA 60
Query 123 GGAACAAGAAGTTTCAACAAGAGGCTAATGTCAAATGCTACAG------------CTTTC 170
||||| |||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 61 GGAACGAGAAGTGTCAACAAGAGGCTTATGTCAAATGCTACAGTTAAATCTATACCTTTC 120
Query 171 TCTATCAACAACAGCAAGCGAAAGGA---ACTCAAGATACCAGGAGCAGCTATTGATCAG 227
|||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||
Sbjct 121 TCTATCAACAACAGCAAGGGAAAGGAGGTACTCAAGATAGTAGGAGCAGCTACTGATCAG 180
Query 228 AATTGTCATCAGATGGGAAGTGATACTGATAGAGATGAAATGGGAACTCTTCAAGATGAT 287
|||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 181 AATTGTCAACAGATGGGAAGTGATAGTGGTAGAGCTGAAATGGGAACTCTTCAAGATGAT 240
Query 288 CGAAAGGAAATTGAGGCGATGACTGTTCAAGAACTTAGATCCACGTTGA-G---GAAACT 343
| |||||| || ||||||||||| ||||||||||||||| |||| |||| | ||||||
Sbjct 241 CAAAAGGATATCGAGGCGATGACGGTTCAAGAACTTAGAGCCACATTGAGGCAAGAAACT 300
Query 344 TGGGGTACCTGTGAAAGGACGCAAACAAGAACTTATCTCAACTTTACGACTTCATATGGA 403
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGGCTACCTGTGAAAGGACGCAAACAAGAACTTATCTCAACTTTACGACTTCATATGGA 360
Query 404 CAGCAATTTACCTG 417
||||||||||||||
Sbjct 361 CAGCAATTTACCTG 374
Score = 193 bits (104), Expect = 5e-48
Identities = 172/201 (86%), Gaps = 19/201 (9%)
Strand=Plus/Plus
Query 1584 GATCATTGCC-CCATTGGCCTTATTCTCAAGCTCTGATTTGTTCAAAATTTCACCATTCC 1642
|||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1257 GATCATTGCCTCCATTGGCCTTATTCTCAAGCTCTGATTTATTCAAAGTTTCACCATTCC 1316
Query 1643 CAGCTTTTT----G-CTAAAGTCTTGAGTAGATTGTAGCTAGAGAGTCACATGTTTTGCT 1697
||||||||| | |||||||||| ||||| || ||| |||||| ||||| |||||| |
Sbjct 1317 CAGCTTTTTTTTTGGCTAAAGTCTTTAGTAGCTTTTAGGTAGAGATTCACAGGTTTTGTT 1376
Query 1698 TCTAGAGAGAGCTTGCTCATGTAAAAATATGGAATAATATATCTATCAGTAAACAGGCTC 1757
|||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 1377 TCTAGAGAGAGCTTGCTCATGTAAAA-TAT------------CTATCAGTAAACAGGCGC 1423
Query 1758 CAAACAATCTGAGTCTTGTCC 1778
|||||||||||||||||||||
Sbjct 1424 CAAACAATCTGAGTCTTGTCC 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66734109240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5