BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41460.1 Length=1778 Score E Sequences producing significant alignments: (Bits) Value Ahg483223 jgi|Araly1|483223|fgenesh2_kg.4__2283__AT2G41460.1 2287 0.0 Ahg483247 jgi|Araly1|483247|fgenesh2_kg.4__2307__AT2G41460.1 599 2e-170 > Ahg483223 jgi|Araly1|483223|fgenesh2_kg.4__2283__AT2G41460.1 Length=1814 Score = 2287 bits (1238), Expect = 0.0 Identities = 1383/1452 (95%), Gaps = 14/1452 (1%) Strand=Plus/Plus Query 338 GAAACTTGGGGTACCTGTGAAAGGACGCAAACAAGAACTTATCTCAACTTTACGACTTCA 397 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 366 GAAACTTGGGCTACCTGTGAAAGGACGCAAACAAAAACTTATCTCAACTTTACGACTTCA 425 Query 398 TATGGACAGCAATTTACCTGATCAAAAGGAAACTTCTTCGTCCACCCGTTCGGATAGTGT 457 |||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| Sbjct 426 TATGGACAGCAATTTACCTGATCAAAAGGAAACTACTTCGTCCACCCGTTCAGAAAGTGT 485 Query 458 CACCATCAAAAGAAAGATCAGCAACAGGGAAGAGCCTACTGAAGATGAATGCACTAACTC 517 ||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| Sbjct 486 CACGATCAAAAGAAAGATCAGAAACAGGGAAGAGCCTACTGAAGATGACTGCAGTAACTC 545 Query 518 TGAAGCTTATGACATTGAACACGGAGAAAAAAGAGTAAAACAGTCTACTGAGAAAAACTT 577 ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 546 TGAAGCTTATGGCACTGAACAAGGAGAAAAAAGAGTAAAACAGTCTACTGAGAAAAACTT 605 Query 578 GAAAGCTAAAGTTTCTGCGAAAGCTATCGCGAAAGAACAGAAGTCATTGATGAGAACAGG 637 |||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||||| Sbjct 606 GAAAGCTAAAGTTTCTGCGAAAGCCATCTCGAAAGAACAGAAGTCATTGACAAAAACAGG 665 Query 638 TAAGCAGCAAATTCAGTCAAAAGAAGAAACATCATCGACCATCTCTAGTGAATTACTGAA 697 ||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||| Sbjct 666 TAAGCAGCAAATTCATTCAAAAGAGGAAGCATCATCGACCATCTCTAGTGTATTACTGAA 725 Query 698 AACTGAAGAAATTATCTCATCCCCGAGTCAAAGTGAACCGTGGACTGTACTTGCTCATAA 757 | |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 726 ACCTGAAGAAATGATCTCATCCCTGAGTCAAAGTGAACCGTGGACTGTACTTGCTCATAA 785 Query 758 GAAGCCTCAGAAGGACTGGAAAGCTTACAACCCAAAGACAATGAGACCTCCCCCTCTACC 817 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 786 GAAGCCTCAGAAGGACTGGAAAGCTTATAACCCAAAGACAATGAGACCTCCCCCTCTACC 845 Query 818 AGAGGGTACCAAATGTGTGAAAGTTATGACTTGGAATGTTAATGGACTGAGAGGATTGTT 877 |||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 846 AGAGGGTACCAAGTGTGTGAAGGTTATGACTTGGAATGTTAATGGACTGAGAGCATTGTT 905 Query 878 GAAGTTTGAGAGCTTCTCTGCTCTGCAGCTTGCCCAAAGAGAAAATTTTGACATCTTGTG 937 |||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 906 GAAGTTAGAGAGCTTCTCTGCTCTGCAGCTTGCGCAAAGAGAAAACTTTGATATCTTGTG 965 Query 938 CTTGCAGGAGACTAAACTCCAGGTGAAA-GATGTTGAGGAAATTAAGAAAACTCTTATTG 996 |||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||| Sbjct 966 CTTGCAGGAGACTAAACTCCAGGT-AAAGGATGTTGAGGAAATCAAGAATACTCTTATTG 1024 Query 997 ATGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCAAAACTTGGCTACTCTGGAACTG 1056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 ATGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCAAAACTTGGCTACTCTGGAACTG 1084 Query 1057 CAATAATCTCACGGATAAAACCACTCTCAGTTAGATATGGTACTGGTCTATCTGG-TCA- 1114 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1085 CAATAATCTCACGGATAAAACCACTCTCAGTTAGATATGGTACTGGTCTATCTGGATCAG 1144 Query 1115 -T---GACACGGAAGGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATA 1170 | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1145 ATCATGACATGGAAGGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATA 1204 Query 1171 CTTATGTCCCTAATTCCGGAGATGGATTAAAAAGACTGTCATACAGGATCGAAGAATGGG 1230 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1205 CTTACGTCCCTAATTCCGGAGATGGCTTAAAAAGACTGTCATACAGGATCGAAGAATGGG 1264 Query 1231 ATCGAACCCTCAGCAATCACATCAAAGAGCTGGAGAAGTCTAAGCCTGTAGTCTTGACGG 1290 |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct 1265 ATCGAACCCTCAGCAACCATATCAAAGAGCTGGAAAAGTCTAAGCCTGTAGTCTTGACGG 1324 Query 1291 GTGATCTAAACTGTGCTCATGAAGAAATTGACATCTTCAATCCTGCGGGGAACAAAAGAA 1350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1325 GTGATCTAAACTGTGCTCATGAAGAAATTGACATCTTCAATCCTGCGGGGAACAAAAGGA 1384 Query 1351 GTGCTGGTTTTACAATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTGTTAGACAAGGGAT 1410 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1385 GTGCTGGTTTTACAATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTCTTAGACAAGGGAT 1444 Query 1411 TTGTAGATACCTTTAGAAAACAACATCCTGGTGTTGTCGGTTACACTTATTGGGGTTATC 1470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1445 TTGTAGATACCTTTAGAAAACAACATCCTGGTGTTGTCGGTTACACTTATTGGGGTTATC 1504 Query 1471 GCCATGGTGGCCGCAAAACCAACAAAGGATGGAGACTGGACTACTTCTTGGTGTCCCAAT 1530 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1505 GCCATGGTGGCCGCAAAACCAACAGAGGATGGAGACTGGACTACTTCTTGGTGTCCGAAT 1564 Query 1531 CAATTGCGGCCAATGTCCATGATTCTTACATCCTCCCTGATATCAATGGAAGTGATCATT 1590 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1565 CAATTGCAGCCAATGTCCATGATTCTTACATCCTCCCTGATATCAATGGAAGTGATCATT 1624 Query 1591 GCCCCATTGGCCTTATTCTCAAGCTCTGATTTGTTCAAAATTTCACCATTCCCAGCTTTT 1650 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 1625 GCCCCATTGGCCTTATTCTCAAGCTCTGATTTATTCAAAGTTTCACCATTCCCAGCTTTT 1684 Query 1651 T-G-CTAAA-GTCTTGAGTAGATTGTAGCTAGAGAGTCACATGTTTTGCTTCTAGAGAGA 1707 | | ||||| ||||| ||||| || |||||||||| ||||| |||||||||||| ||| | Sbjct 1685 TTGGCTAAAAGTCTTTAGTAGCTTTTAGCTAGAGATTCACAGGTTTTGCTTCTACAGAAA 1744 Query 1708 GCTTGCTCATGTAAAAATATGGAATAATATATCTATCAGTAAACAGGCTCCAAACAA-TC 1766 ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1745 GCTTGGTCATGTAAAA-TATGGAATAATATATCTATCAGTAAACAGGCTCCAAACAAAT- 1802 Query 1767 TGAGTCTTGTCC 1778 |||||||||||| Sbjct 1803 TGAGTCTTGTCC 1814 > Ahg483247 jgi|Araly1|483247|fgenesh2_kg.4__2307__AT2G41460.1 Length=1444 Score = 599 bits (324), Expect = 2e-170 Identities = 360/377 (95%), Gaps = 4/377 (1%) Strand=Plus/Plus Query 1125 GGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATACTTATGTCCCTAAT 1184 |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 844 GGGCTTATTGTAACTGCTGAATTCGACTCCTTCTATTTGATAAATACTTATGTCCCTAAT 903 Query 1185 TCCGGAGATGGATTAAAAAGACTGTCATACAGGATCGAAGAATGGGATCGAACCCTCAGC 1244 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 904 TCCGGAGATGGCTTAAAAAGACTGTCATACAGGATCGAAGAATGGGATCGAACCCTCAGC 963 Query 1245 AATCACATCAAAGAGCTGGAGAAGTCTAAGCCTGTAGTCTTGACGGGTGATCTAAACTGT 1304 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 964 AATCACATCAAAGAGCTGGAAAAGTCTAAGCCTGTAGTCTTGACGGGTGATCTAAATTGC 1023 Query 1305 GCTCATGAAGAAATTGACATCTTCAATCCTGCGGGGAACAAAAGAAGTGCTGGTTTTACA 1364 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 GCTCATGAAGAAATTGACGTCTTCAATCCTGCGGGGAACAAAAGAAGTGCTGGTTTTACA 1083 Query 1365 ATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTGTTAGACAAGGGATTTGTAGATACCTTT 1424 |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||| Sbjct 1084 ATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTCTTAGCCAAGGGCTTTGTAGATACATTT 1143 Query 1425 AGAAAACAACATCCTGGTGTTGTCGGTTACACTTATTGGGGTTATCGCCAT----GGTGG 1480 ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1144 AGAAAGCAACATCTTGGTGTTGTCGGTTACACTTATTGGGGTTATCGCCATCCATGGTGG 1203 Query 1481 CCGCAAAACCAACAAAG 1497 ||||||||||||||||| Sbjct 1204 CCGCAAAACCAACAAAG 1220 Score = 492 bits (266), Expect = 4e-138 Identities = 382/433 (88%), Gaps = 28/433 (6%) Strand=Plus/Plus Query 645 CAAATTCAGTC-AAAAGAAGAAACATCATCGACCATCTCTAGTGAATTACTGAAAACTGA 703 |||||||| || |||||| ||| ||||||||| ||||||||||||||| |||||||| | Sbjct 417 CAAATTCATTCAAAAAGAGGAAGCATCATCGATCATCTCTAGTGAATTTCTGAAAACCAA 476 Query 704 AGAAATTATC-TCATCCCCGAGTCAAA-GT--GAACCGTGGACTGTACTTGCTCATAAGA 759 |||||| ||| | |||||||||||||| | ||||| ||| ||||||||||||||| || Sbjct 477 AGAAATAATCGT-ATCCCCGAGTCAAACCTCAGAACCCTGGGCTGTACTTGCTCATACGA 535 Query 760 AGCCTCAGAAGGACTGGAAAGCTTACAACCCAAAGACAATGAGACCTCCCCCTCTACCAG 819 ||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| Sbjct 536 AGCCTCAGAAGGACTGGAAAGCTTATAACCCAAAGACAATGAGA---CCCCC-CTACCAG 591 Query 820 AGGGT-ACCAAATGTGTGAAAGTTATGACTTGGAATGTTAATGGACTGAGAGGATTGTTG 878 ||| | ||| || || | || | ||| ||||||||| |||||| ||||||| Sbjct 592 AGGATAACC-AA---GT----G---TG---T-GAAGGTTAATGGATTGAGAGCATTGTTG 636 Query 879 AAGTTTGAGAGCTTCTCTGCTCTGCAGCTTGCCCAAAGAGAAAATTTTGACATCTTGTGC 938 ||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| Sbjct 637 AAGTTAGAGAGCTTCTCTGCTCTGCAGCTTGCCCAAAGAAAAAATATTGATATCTTGTGC 696 Query 939 TTGCAGGAGACTAAACTCCAGGTGAAA-GATGTTGAGGAAATTAAGAAAACTCTTATTGA 997 ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 697 TTGCAGGAGACTAAAATCCAGGT-AAAGGATGTTGAGGAAATTAAGAAAACTCTTATTGA 755 Query 998 TGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCAAAACTTGGCTACTCTGGAACTGC 1057 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 756 TGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCGAAACTTGGCTACTCTGGAACTGC 815 Query 1058 AATAATCTCACGG 1070 ||||||||||||| Sbjct 816 AATAATCTCACGG 828 Score = 435 bits (235), Expect = 7e-121 Identities = 331/374 (89%), Gaps = 19/374 (5%) Strand=Plus/Plus Query 63 TTTCTGGTGGTGCCTCTTAGGAGTTTGAGAGTTGGTTCATCTTTCGTTGGAGTTGGAGTG 122 ||||||||||||||| |||||||||| || |||||||||||| ||||||| |||||||| Sbjct 1 TTTCTGGTGGTGCCTATTAGGAGTTTAAGCGTTGGTTCATCTATCGTTGGTGTTGGAGTA 60 Query 123 GGAACAAGAAGTTTCAACAAGAGGCTAATGTCAAATGCTACAG------------CTTTC 170 ||||| |||||| ||||||||||||| |||||||||||||||| ||||| Sbjct 61 GGAACGAGAAGTGTCAACAAGAGGCTTATGTCAAATGCTACAGTTAAATCTATACCTTTC 120 Query 171 TCTATCAACAACAGCAAGCGAAAGGA---ACTCAAGATACCAGGAGCAGCTATTGATCAG 227 |||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||| Sbjct 121 TCTATCAACAACAGCAAGGGAAAGGAGGTACTCAAGATAGTAGGAGCAGCTACTGATCAG 180 Query 228 AATTGTCATCAGATGGGAAGTGATACTGATAGAGATGAAATGGGAACTCTTCAAGATGAT 287 |||||||| |||||||||||||||| || ||||| ||||||||||||||||||||||||| Sbjct 181 AATTGTCAACAGATGGGAAGTGATAGTGGTAGAGCTGAAATGGGAACTCTTCAAGATGAT 240 Query 288 CGAAAGGAAATTGAGGCGATGACTGTTCAAGAACTTAGATCCACGTTGA-G---GAAACT 343 | |||||| || ||||||||||| ||||||||||||||| |||| |||| | |||||| Sbjct 241 CAAAAGGATATCGAGGCGATGACGGTTCAAGAACTTAGAGCCACATTGAGGCAAGAAACT 300 Query 344 TGGGGTACCTGTGAAAGGACGCAAACAAGAACTTATCTCAACTTTACGACTTCATATGGA 403 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGGGCTACCTGTGAAAGGACGCAAACAAGAACTTATCTCAACTTTACGACTTCATATGGA 360 Query 404 CAGCAATTTACCTG 417 |||||||||||||| Sbjct 361 CAGCAATTTACCTG 374 Score = 193 bits (104), Expect = 5e-48 Identities = 172/201 (86%), Gaps = 19/201 (9%) Strand=Plus/Plus Query 1584 GATCATTGCC-CCATTGGCCTTATTCTCAAGCTCTGATTTGTTCAAAATTTCACCATTCC 1642 |||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 1257 GATCATTGCCTCCATTGGCCTTATTCTCAAGCTCTGATTTATTCAAAGTTTCACCATTCC 1316 Query 1643 CAGCTTTTT----G-CTAAAGTCTTGAGTAGATTGTAGCTAGAGAGTCACATGTTTTGCT 1697 ||||||||| | |||||||||| ||||| || ||| |||||| ||||| |||||| | Sbjct 1317 CAGCTTTTTTTTTGGCTAAAGTCTTTAGTAGCTTTTAGGTAGAGATTCACAGGTTTTGTT 1376 Query 1698 TCTAGAGAGAGCTTGCTCATGTAAAAATATGGAATAATATATCTATCAGTAAACAGGCTC 1757 |||||||||||||||||||||||||| ||| |||||||||||||||| | Sbjct 1377 TCTAGAGAGAGCTTGCTCATGTAAAA-TAT------------CTATCAGTAAACAGGCGC 1423 Query 1758 CAAACAATCTGAGTCTTGTCC 1778 ||||||||||||||||||||| Sbjct 1424 CAAACAATCTGAGTCTTGTCC 1444 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66734109240 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5