BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41473.1
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934977 jgi|Araly1|934977|scaffold_402965.1 292 7e-79
> Ahg934977 jgi|Araly1|934977|scaffold_402965.1
Length=1117
Score = 292 bits (158), Expect = 7e-79
Identities = 220/249 (88%), Gaps = 8/249 (3%)
Strand=Plus/Plus
Query 7 GAACTTGCTTTTGACTTGGTCAT-TGAGATACTTGCAAAGGTTCCGGTTAAATACTTGCT 65
|||||| |||||||||||||| | |||||||||||||| |||||| ||| | |||||||
Sbjct 27 GAACTTCCTTTTGACTTGGTC-TGTGAGATACTTGCAAGGGTTCCAGTTGAGGACTTGCT 85
Query 66 ACGGTTTAGATGTGTCTGCAAAAGCTGGCGTTCGTTGTTCCAAGATGAGAGATTCATCAG 125
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 86 ACGGTTTAGATGTGTCTGCAAAAGCTGGCGTTCGTTGTTCCAAGATGAGGGATTCATCAG 145
Query 126 AATGCACACAACTCATGCCCCGAGCATGTTTCTACTGTCCGCT--T-GTTGGCCACGGTA 182
|| ||||||||||||||||||||| ||||||||| || | ||| | | ||||||| |||
Sbjct 146 AAAGCACACAACTCATGCCCCGAGTATGTTTCTATTGGCGGCTAATTGGTGGCCACAGTA 205
Query 183 TACACCACCGCGCACTTGTACTTACCAAGGTCGCAGGCTAAAGATGATATTCCAAGATCC 242
|| || |||||||||||||||| |||||| | ||||||||||||||||||||| ||
Sbjct 206 TAGACT---GCGCACTTGTACTTACGAAGGTCTTACGCTAAAGATGATATTCCAAGAGCC 262
Query 243 TGAATTGAA 251
|||||||||
Sbjct 263 TGAATTGAA 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9615208428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5