BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41475.1
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483224 jgi|Araly1|483224|fgenesh2_kg.4__2284__AT2G41475.1 1114 0.0
> Ahg483224 jgi|Araly1|483224|fgenesh2_kg.4__2284__AT2G41475.1
Length=799
Score = 1114 bits (603), Expect = 0.0
Identities = 751/817 (92%), Gaps = 31/817 (4%)
Strand=Plus/Plus
Query 13 TTGTTTGGTTTGATCCAAATCTCCAAAAACCACTAAGATCTGACCATTTTGTTCATCGAC 72
|||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTTTGGTTTGTTCCAAA-CCCCAAAAACCACTAAGATCTGACCATTTTGTTCATCGAC 59
Query 73 TTTTTCAACTC---AAAACAAAATGCTCAGATTAGCGATTCCTTTGTTTCTTTTTGCATT 129
||||||||||| |||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 60 TTTTTCAACTCAAAAAAAAAAAATGCTCAGATTAGCGATTTCGTTGTTTCTTTTTGCATT 119
Query 130 ATGCTCTTTCACATTATTTTCTTCTGCAAGATCCTTCATCACCACAAAACCTCTTCCGAT 189
||||||||| |||| |||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 120 ATGCTCTTTGACATCATTTTCGTCAGCAAGATCCTTCATCACCACAAAACCTCGTCCGAT 179
Query 190 TGATTCATTTATTCCTAAACCAAAGCTAGAGAATGCGGCTGCGTGTTCTTACACGGTGAT 249
|||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 TGATTCATTTCTCCCTAAACCAAAGCTAGAGAATGCGGCTGTGTGTTCTTACACGGTGAT 239
Query 250 CATTAAGACAAGCTGTTCCTCTGTGTCTTACACTAGAGATAAGATCAGTATATCGTTTGG 309
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CATTAAGACAAGCTGTTCCTCCGTGTCTTACACTAGAGATAAGATCAGTATATCGTTTGG 299
Query 310 TGATGTCTACGGCAACGAGGTGTATGTGAAGAGACTAGACGATCCATCGTCGAGGACGTT 369
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 300 TGATGTCTACGGCAACGAGGTGTATGTGAAAAGACTAGACGATCCATCCTCGAGGACGTT 359
Query 370 CGAAAAGTGTTCATCAGACACATACAAGATATCGGGACCGTGTATGCGCGACGTTTGTTA 429
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGAAAAGTGTTCTTCAGACACATACAAGATATCGGGACCGTGTATGCGCGACGTTTGTTA 419
Query 430 TCTCTACCTCCTCAGGCAAGGATCCGACGGCTGGAAACCAGAGAATGTTAAGATCTACGG 489
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TCTCTACCTCCTCAGGCAAGGATCCGACGGCTGGAAACCAGAGAACGTTAAGATCTACGG 479
Query 490 CTCATCCATCAGATCAGTCACTTTCTACTACAACCTTTTCTTGCCTAACTCTGTTTGGTA 549
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TTCATCCATCAGATCAGTCACTTTCTACTACAACCTCTTCTTGCCTAACTCTGTTTGGTA 539
Query 550 CGGCTTTAATGTCTGCAATGGCATTGGCAATACCAAGTCTTCTCAACCCATTAGTACTAC 609
||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |
Sbjct 540 CGGCTTTAATGTCTGCAATGGCATTAGCAATACCAAGCCTTCTCAACCCATCAGTACTGC 599
Query 610 CTCTTCCGTTGCAGCTATGTAAGATTGATATAATAATTAAAAACAAGGACTTGTGATTAT 669
|||||||||||||||||||||||||| | | | ||||||||||||||| |
Sbjct 600 CTCTTCCGTTGCAGCTATGTAAGATT-A-A-A-----------CAAGGACTTGTGATTGT 645
Query 670 CGGTGAATTGCTATTTGTATGGCATAACT---TGGAGAAGAAGTACAAGTGTGTTGATCA 726
| ||| |||||||||| | ||||| || | ||| |||||||||||| |||||||||||
Sbjct 646 CTGTGGATTGCTATTTTTGTGGCAGAAATACATGGGGAAGAAGTACAAATGTGTTGATCA 705
Query 727 TGAGTGTATTTTTGAGAGaaaaaaaaa-aC-T-TGT--ATG-TT-GATTTGATCTATTGC 779
||||||||||| |||| ||||||||| | | ||| ||| || |||||||||||||||
Sbjct 706 TGAGTGTATTT--GAGA-AAAAAAAAACATGTATGTTGATGCTTTGATTTGATCTATTGC 762
Query 780 AAGTGGCTACTTGCGAAGTGGCCTAGCCTTTTTCTTT 816
||||||||||||||||||||||||||||||||| |||
Sbjct 763 AAGTGGCTACTTGCGAAGTGGCCTAGCCTTTTTTTTT 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30155227347
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5