BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41480.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902115 jgi|Araly1|902115|Al_scaffold_0004_2765 1580 0.0
> Ahg902115 jgi|Araly1|902115|Al_scaffold_0004_2765
Length=981
Score = 1580 bits (855), Expect = 0.0
Identities = 944/987 (96%), Gaps = 6/987 (1%)
Strand=Plus/Plus
Query 42 ATGGGAGTGTACTTAGGTAAGTATTGTTATATAATGATAATAATGTTAGTGTTGGTGTTG 101
|||||||||||| |||| |||||||||||| ||||| |||| ||||||||||||||
Sbjct 1 ATGGGAGTGTACGTAGGAAAGTATTGTTATGTAATG---ATAA---TAGTGTTGGTGTTG 54
Query 102 GGAAAAGAAGTGAGAAGCCAGTTGTTAAAAAATGGTTATTATTCAACTTCATGTCCAAAA 161
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 55 GGAAACGAAGTGAGAAGCCAATTGTTAAAAAATGGTTATTATTCAACTTCATGTCCAAAA 114
Query 162 GCTGAGTCGATAGTTAGATCCACTGTTGAATCTCACTTTGATTCTGATCCCACAATTTCC 221
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GCTGAGTCGATAGTAAGATCCACTGTTGAATCTCACTTTGATTCTGATCCCACAATTTCC 174
Query 222 CCTGGCTTGCTTAGGCTTCATTTCCATGACTGTTTTGTTCAGGGTTGTGATGGTTCGGTT 281
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CCTGGCTTGCTTCGGCTTCATTTCCATGACTGTTTTGTTCAGGGTTGTGATGGTTCGGTT 234
Query 282 TTAATCAAAGGGAAATCTGCGGAGCAAGCTGCTCTACCAAATCTTGGTCTAAGAGGTTTA 341
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 235 TTAATCAAAGGGAAATCTGCGGAGCAAGCTGCTCTACCGAATCTTGGTCTAAGAGGGTTC 294
Query 342 GAAGTGATCGATGATGCTAAAGCCCGGCTTGAGGCGGTGTGTCCAGGAGTTGTGTCATGT 401
||||||||||| ||||| ||||||||||| ||| || |||||||||||| |||||||||
Sbjct 295 GAAGTGATCGACGATGCGAAAGCCCGGCTCGAGTTGGAGTGTCCAGGAGTGGTGTCATGT 354
Query 402 GCAGATATACTTGCACTTGCTGCTCGTGACTCTGTTGACTTGAGTGATGGGCCAAGCTGG 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GCAGATATACTTGCACTTGCTGCTCGTGACTCTGTTGACTTGAGTGATGGGCCAAGCTGG 414
Query 462 CGAGTACCAACGGGTCGTAAAGACGGGAGAATCTCGTTGGCAACTGAAGCATCGAATCTA 521
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 415 CGAGTACCAACGGGTCGCAAAGACGGGAGAATCTCGTTGGCAAAAGAAGCATCGAATCTA 474
Query 522 CCTTCTCCACTTGACTCTGTTGCTGTTCAAAAGCAAAAGTTTCAAGATAAAGGATTGGAT 581
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 475 CCTTCTCCACTTGACTCTGTTTCTGTTCAAAAGCAAAAGTTCCAAGATAAAGGATTGGAT 534
Query 582 ACTCATGATCTAGTTACTCTACTAGGTGCACATACAATTGGACAAACCGACTGTCTCTTC 641
||||||||||| ||||||||||| ||||||||||| || || ||||| ||||||||||||
Sbjct 535 ACTCATGATCTCGTTACTCTACTCGGTGCACATACGATAGGCCAAACGGACTGTCTCTTC 594
Query 642 TTCCGTTACCGTTTATACAACTTCACGGTGACCGGAAACTCCGATCCAACCATAAGCCCA 701
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTCCGTTACCGTCTATACAACTTCACGGTGACCGGAAACTCCGATCCAACCATAAGCCCA 654
Query 702 TCGTTTCTTACACAGCTCAAGACTCTTTGTCCTCCCAATGGAGACGGTTCGAAACGTGTT 761
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 655 TCGTTTCTTACACAGCTCAAGACTCTTTGTCCTCCCAATGGAGACGGTTCCAAACGTGTT 714
Query 762 GCTCTTGACATTGGTAGCCCCTCAAAATTCGATGAAAGTTTCTTCAAGAACTTACGCGAC 821
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 715 GCTCTTGACATTGGTAGTCCTTCAAAATTCGATGAAAGTTTCTTCAAGAACTTACGCGAC 774
Query 822 GGAAACGCTATTCTAGAGTCGGACCAACGGCTTTGGTCGGACGCCGAGACAAATGCCGTG 881
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 775 GGCAACGCTATTCTAGAGTCGGACCAACGGCTTTGGTCAGACGCCGAGACAAATGAAGTG 834
Query 882 GTGAAGAAGTATGCGAGTCGTCTTAGAGGTTTGTTAGGGTTTAGGTTTGATTATGAGTTT 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTGAAGAAGTATGCGAGTCGTCTTAGAGGTTTGTTAGGGTTTAGGTTTGATTATGAGTTT 894
Query 942 GGTAAAGCTATGATTAAGATGAGTTCCATTGATGTAAAGACTGACGTTGATGGCGAGGTT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 895 GGTAAAGCTATGATTAAGATGAGTTCCATTGATGTAAAGACTGACGTTGATGGTGAGGTT 954
Query 1002 AGGAAAGTTTGTTCCAAGGTGAACTAG 1028
|||||||||||||||||||||||||||
Sbjct 955 AGGAAAGTTTGTTCCAAGGTGAACTAG 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5