BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41490.1
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483226 jgi|Araly1|483226|fgenesh2_kg.4__2286__AT2G41490.1 2388 0.0
Ahg938693 jgi|Araly1|938693|scaffold_502884.1 1430 0.0
Ahg483227 jgi|Araly1|483227|fgenesh2_kg.4__2287__AT2G41500.1 100 3e-20
> Ahg483226 jgi|Araly1|483226|fgenesh2_kg.4__2286__AT2G41490.1
Length=1467
Score = 2388 bits (1293), Expect = 0.0
Identities = 1399/1450 (96%), Gaps = 7/1450 (0%)
Strand=Plus/Plus
Query 1 TCAGGCGAACGGAGTTTGGAGTCAAAATCCAGAGCGCGGGGAAACGAAACGAGCCAACAA 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TCAGGCGAACGGGGTTTGGAGTCAAAATCCAGAGCGCGGGGAAACGAAACGAGCCAGCAA 60
Query 61 ATCCGCCATGGCAGCTCGTAAGAGAGCTTCATCGATCTCAATTCCCAACAAACCGGA-CC 119
|||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||
Sbjct 61 ATCCGCCATGGCAGCTCGTAAGAGAGCTTCGTCGATGTCAATTTCCAACAAACCGGATCC 120
Query 120 CGTCGGAACCCAACTCAGCGCCATCGGAGCAGAAGATGACCCGAAAGACGGTTTCTGCTT 179
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 121 GGT-AGAACCCAACTCAGCGCCATCTGAGCAGAAGATGACCCGAAAGACCGTTTCCGCTT 179
Query 180 CCGGTGAGGAATTTCGTCTCGCGCCGCCGAAATTAGGAGTGATCTTCGTGATCTCTACTC 239
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 CCGGTGAAGAATTCCGTCTCGCGCCGCCGAAATTGGGAGTGATCTTCGTGATCTCTACTC 239
Query 240 TTCTCTGTTCGCTCTATCTATACCTTCTCTGTTTTCACTACAAGGTTGATAATGAGCTCA 299
||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 240 TTCTCTGCTCGCTCGATCTATACCTTCTCTGTTTCCACTACAAGGTTGACAATGAGCTCA 299
Query 300 AGCGATCGATTCTAATTAACGCGGGGCTTAGCTTGGTTGGGTTTTTCGTCACTCTCAAAA 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 300 AGCGATCGATTCTAATTAACGCGGGGCTTAGCTTGGTTGGGTCCTTCGTCACTCTCAAGA 359
Query 360 TGATTCCTGTTACTGCCAGATACGTTCTGAGACGTAACATGTTTGGTTTTGATATCAACA 419
||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 360 TGATTCCTGTTGCTGCCAGATACGTTCTGAGGCGTAATATGTTTGGTTTTGATATCAACA 419
Query 420 AAAGAGGCACGCCTCAAGGAGATATTAAAGTGCCAGAGTCATTGGGTATTGTTGTTGGTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAAGAGGCACGCCTCAAGGAGATATTAAAGTGCCAGAGTCATTGGGTATTGTTGTTGGTA 479
Query 480 TTGTCTTTTTGATCGTGGCGATAATATTTCAGTATTTTAACTTCACTGAAGATTCTAATT 539
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 480 TTGTCTTCTTGATCGTGGCGATTATATTTCAGTATTTTAACTTCACTGAAGATTCAAATT 539
Query 540 GGCTTGTGGAGTATAATGCAGCACTAGCATCTATTTGCTTCATGATTTTGCTTGGATTTG 599
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 540 GGCTTGTGGAGTATAATGCAGCATTAGCATCTATTTGCTTCATGATTTTGCTTGGATTTG 599
Query 600 TAGATGATGTCCTTGATGTGCCTTGGAGAGTAAAGCTTGTCCTGCCATCTTTTGCTACCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAGATGATGTCCTTGATGTGCCTTGGAGAGTAAAGCTTGTCCTGCCATCTTTTGCTACCC 659
Query 660 TTCCACTTTTGATGGCTTATGCTGGTCATACAACTATTGTTATACCAAAACCTCTTGTTG 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 660 TTCCACTTTTGATGGCTTATGCTGGTCATACAACTATTGTTATACCGAAACCTCTAGTTG 719
Query 720 CTTATATTGGCTTGGAAGTGCTTAATCTAGGAAGGATATATAAGTTATATATGGGGCTAC 779
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 720 CTTATATTGGCTTGGAAGTGCTTGATCTAGGACGGATATATAAGTTATATATGGGGCTAC 779
Query 780 TTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGCCTTGAAATCG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGCCTTGAAATCG 839
Query 840 GTCAAACAGTTGTTATTGCCGCTGCTATCCTGATACACAACGTTATGCAAATCGGAGCAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTCAAACAGTTGTTATTGCCGCTGCTATCCTGATACACAACGTTATGCAAATCGGAGCAT 899
Query 900 CTGTTGATCCCGAGTATCACCAAGCTCATGCCTTCTCGATATTTCTTACTCAACCGCTGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTGTTGATCCCGAGTATCACCAAGCTCATGCCTTCTCGATATTTCTTACTCAACCGCTGA 959
Query 960 TGGCCACATCCTTGGCAATGCTTGCTTACAATTGGTATCCTTCTTCAGTTTTTGTTGGAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGCCACATCCTTGGCAATGCTTGCTTACAATTGGTATCCTTCTTCAGTTTTTGTTGGAG 1019
Query 1020 ACACTTACACAGTCTTCGCCGGAATGACTATGGCAGTTGTTGGTATTCTGGGTCACTTCA 1079
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1020 ACACTTACACAGTCTTCGCTGGAATGACTATGGCAGTTGTTGGCATTCTGGGTCACTTCA 1079
Query 1080 GTGAAACCCTCCTCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATCGCTTCCTC 1139
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 GTGAAACCCTCCTCATCTTTTTTCTTCCTCAAGTTCTGAACTTTCTATTGTCGCTTCCTC 1139
Query 1140 AGCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAGGTATGATCCTGCTACCG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAGGTATGATCCTGCTACCG 1199
Query 1200 GATTACTGACCGGCACAAAAGATGGGACACTCGTCAATGTTTACTTGAGGTTGTTTGGTC 1259
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1200 GATTACTGACCGGCACAAAAGATGGGACACTTGTCAATGTTTACTTGAGGTTGTTTGGTC 1259
Query 1260 CTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGGCTCTAGCCTGCGCCT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1260 CTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGGCTCTAGCGTGCGCCT 1319
Query 1320 TCTGCTTCATACTTCGACACTTTCTTGCTGGTTGGTATAAATAG-TCTGCAATCAGAGAA 1378
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1320 TCTGTTTCATACTTCGACACTTTCTTGCTGGTTGGTATAAATAAATCTGCAATCAGACAA 1379
Query 1379 GTCACAAATACAGAACATTACTTTAGTACCTTGTACAATCGTATATATCAAC--AATTTT 1436
||||||||||||||||||||||| ||| ||||||| ||||||||||| |||| ||||||
Sbjct 1380 GTCACAAATACAGAACATTACTTCAGTTCCTTGTAAAATCGTATATAGCAACGTAATTTT 1439
Query 1437 T-GTT-AACG 1444
| ||| ||||
Sbjct 1440 TTGTTGAACG 1449
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1485 TTTTTGTTGAACGAAATGGCAAAATTTTCAA 1515
|||||||||||||||||||||||||||||||
Sbjct 1437 TTTTTGTTGAACGAAATGGCAAAATTTTCAA 1467
> Ahg938693 jgi|Araly1|938693|scaffold_502884.1
Length=1321
Score = 1430 bits (774), Expect = 0.0
Identities = 1060/1197 (89%), Gaps = 24/1197 (2%)
Strand=Plus/Plus
Query 178 TTCCGGTGAGGAATTT-CGTCTCGCGCCGCCGAAATTAGGAGTGATCTTCGTGATCTCTA 236
|||||| |||| |||| |||||||||||||| ||||| || |||||||| |||||||||
Sbjct 116 TTCCGGCGAGG-ATTTCCGTCTCGCGCCGCCCAAATTGGGCGTGATCTTTGTGATCTCTT 174
Query 237 CTCTTCTCTGTTCGCTCTATCTATACCTTCTCTGTTTTCACTACAAGGTTGATAATGAGC 296
| ||||| |||||||| ||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct 175 CGCTTCTGTGTTCGCTTTATCTTTACCTTCTCTGTTTCCACTACAATGTTGACAATGAGC 234
Query 297 TCAAGCGAT-CGATTCTAATTAACGCGGGGCTTAGCTTGGTTGGGTT-TTTCGTCACTCT 354
||||||| | |||| || |||||||| |||||||| ||||||||||| ||| ||||| ||
Sbjct 235 TCAAGCG-TCCGATCCTCATTAACGCTGGGCTTAGTTTGGTTGGGTTCTTT-GTCACACT 292
Query 355 CAAAATGATTCCTGTTA-CTGCCAGATACGTTCTGAGACGTAACATGTTTGGTTTTGATA 413
|||| ||||||||| || |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 293 CAAATTGATTCCTG-TAGCTGCTAGATACGTTCTGAGGCGTAACATGTTTGGTTTTGATA 351
Query 414 TCAACAAAAGAGGCACGCCTCAAGGAGATA-TTAAAGTGCCAGAGTCATTGGGTATTGTT 472
| |||||||||||||| ||||||||||| | |||||||||| ||||||||||| ||||||
Sbjct 352 TTAACAAAAGAGGCACTCCTCAAGGAGA-AGTTAAAGTGCCTGAGTCATTGGGAATTGTT 410
Query 473 GTTGGTATTGTCTTTTTGATCGTGGCGATAATATTTCAGTAT-TTTAACTTCACTGAAGA 531
|| ||||||||||| ||||| ||||||||| | ||||||| | ||||| |||||||||||
Sbjct 411 GTCGGTATTGTCTTCTTGATAGTGGCGATAGTGTTTCAGT-TCTTTAATTTCACTGAAGA 469
Query 532 TTCTAAT-TGGCTTGTGGAGTATAATGCAGCACTAGCATCTATTTGCTTCATGATTTTGC 590
||| | |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 470 TTC-GGTGTGGCTTGTGGAGTATAATGCAGCACTGGCGTCTATTTGCTTCATGATTTTGC 528
Query 591 TTGGATTTGTAGATGATGTCCTTGATGTGCCTTGGAGAGT-AAAGCTTGTCCTGCCATCT 649
|||||||||||||||| ||||||||||||||||||||||| ||| ||| || ||||||||
Sbjct 529 TTGGATTTGTAGATGACGTCCTTGATGTGCCTTGGAGAGTGAAA-CTTCTCTTGCCATCT 587
Query 650 TTTGCTACCCTTCCACTT-TTGATGGCTTATGCTGGTCATACAACTATTGTTATACCAAA 708
||||| ||||||||| || ||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 588 TTTGCAACCCTTCCA-TTGTTGATGGCTTATGCTGGACATACAACTATCGTCATACCGAA 646
Query 709 ACCTCTTGTTGCTTATATTGGCTTGGAAGTGCTTAATCTAGGAAGGATATATAAGTTATA 768
|||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 647 ACCTCTTGTTTCTTATATTGGCTTGGAAGTGTTTGATCTAGGACGGATATATAAGTTATA 706
Query 769 TATGGGGCTACTTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGG 828
||||| |||||| ||||||||||| ||||| ||||| ||||| || |||||| |||||||
Sbjct 707 TATGGCGCTACTAGCTGTCTTTTGCACAAATTCTATAAACATTCATGCTGGTTTGAATGG 766
Query 829 CCTTGAAATCGGTCAAACAGTTGTTATTGCCGCTGCTATCCTGATACACAACGTTATGCA 888
||| |||||||||||||| || |||||||| |||||||| |||||||||||| |||||||
Sbjct 767 CCTAGAAATCGGTCAAACCGTAGTTATTGCAGCTGCTATTCTGATACACAACATTATGCA 826
Query 889 AATCGGAGCATCTGTTGATCCCGAGTATCACCAAGCTCATGCCTTCTCGATATTTCTTAC 948
|||||||| |||||||||| | |||||||| ||||||||||||||||| || | ||||||
Sbjct 827 AATCGGAGTATCTGTTGATACTGAGTATCATCAAGCTCATGCCTTCTCAATCTATCTTAC 886
Query 949 TCAACCGCTGATGGCCACATCCTTGGCAATGCTTGCTTACAATTGGTATCCTTCTTCAGT 1008
||| || ||||||| |||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 887 TCAGCCATTGATGGCAACATCCTTGGCAATGCTTGCCTACAATTGGTACCCTTCTGCAGT 946
Query 1009 TTTTGTTGGAGACACTTACACAGTCTTCGCCGGAATGACTATGGCAGTTGTTGGTATTCT 1068
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 947 TTTTGTTGGAGACACTTACACAGTCTTTGCCGGAATGACTATGGCAGTTGTTGGCATTCT 1006
Query 1069 GGGTCACTTCAGTGAAACCCTCCTCATCTTCTTTCTTCCTCAAGT-TCTGAACTTTCTAT 1127
||||||||||||||||||||| | ||||| |||||||||||||| | |||||||||| |
Sbjct 1007 CGGTCACTTCAGTGAAACCCTCTTAATCTTTTTTCTTCCTCAAGTGT-TGAACTTTCTTT 1065
Query 1128 TATCGCTTCCTCAGCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCC-AAGGTAT 1186
| |||||||| ||||||||||| |||||||||||||| || ||||||||||| ||| | |
Sbjct 1066 TGTCGCTTCCGCAGCTTGCTGGCATTGTGAAATGTCCACGACATCGTCTCCCCAAGTT-T 1124
Query 1187 GATCCTGCTACCGGATTACTGACCGGCACAAAAGATGGGACACTCGTCAATGTTTACTTG 1246
||||||||||| || || | || || |||||||||||||||||||| || || ||| ||
Sbjct 1125 GATCCTGCTACGGGGCTATTAACAGGAACAAAAGATGGGACACTCGTGAACGTCTACCTG 1184
Query 1247 AGG-TTGTTTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGGC 1305
||| || |||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1185 AGGATT-TTTGGTAGGAAATCAGAAAAGTCTCTTTGTATCCATCTTCTTGTTTTCCAGGC 1243
Query 1306 TCTAGCCTGCGCCTTCTGCTTCATACTTCGACACTTTCTTGCTGGTTGGTATAAATA 1362
|||||| |||||||| || ||||| ||| | || ||||| ||||||||||| |||||
Sbjct 1244 TCTAGCTTGCGCCTTTTGTTTCATGCTTAGGCATTTTCTAGCTGGTTGGTACAAATA 1300
> Ahg483227 jgi|Araly1|483227|fgenesh2_kg.4__2287__AT2G41500.1
Length=2002
Score = 100 bits (54), Expect = 3e-20
Identities = 59/61 (97%), Gaps = 1/61 (2%)
Strand=Plus/Minus
Query 1485 TTTTTGTTGAACGAAATGGCAAAATTTTC-AAGACAATGTATCAGCATCCTGAGTTTCTA 1543
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2002 TTTTTGTTGAACGAAATGGCAAAATTTTCAAAGACAATGTATCATCATCCTGAGTTTCTA 1943
Query 1544 T 1544
|
Sbjct 1942 T 1942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57820991910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5