BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41500.1
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483227 jgi|Araly1|483227|fgenesh2_kg.4__2287__AT2G41500.1 3009 0.0
Ahg930881 jgi|Araly1|930881|scaffold_303338.1 1077 0.0
Ahg483226 jgi|Araly1|483226|fgenesh2_kg.4__2286__AT2G41490.1 58.4 2e-07
> Ahg483227 jgi|Araly1|483227|fgenesh2_kg.4__2287__AT2G41500.1
Length=2002
Score = 3009 bits (1629), Expect = 0.0
Identities = 1913/2042 (94%), Gaps = 51/2042 (2%)
Strand=Plus/Plus
Query 8 TTCTCGCATCAAATTTCCGTTTTTGCTACCGTCGTCTCTGGTCAGACT-CAGAGGAAACA 66
||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1 TTCTCGCTTCAATTTTCCGTTTTTGCTACCGTCGTCTCTGG--AGACTGGAGAGGAAACA 58
Query 67 CGGAGCTTGAGCAACTGACAAGACTGTTTCGTGTTTGGGGCTTTCGAAGAGAGTAACGAG 126
||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 59 CGGCGCTTGAGCAACTGACAAGTCTGTTTCGTGTTTGGGGTTTTCGAAGAGAGTAACGAG 118
Query 127 ATTCGCGGGTTTCGTCAATTCCTGGGTTTTCTCTAGATTGCTGTTTCGGTGGTGTTTTCT 186
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 119 ATTCGCGGATTTCGTCAATTCCTGGGTTTTCTCTAGATTGCTGTTTCGGTGGTGTTTTTT 178
Query 187 TT-TGAGGATTTAAGGGAAACATGGAACCCAACAAGGATGATAATGTTTCATTAGCAGCA 245
|| |||||||||||| | |||||||||||||| ||||| |||||||||| |||| |||||
Sbjct 179 TTCTGAGGATTTAAGCG-AACATGGAACCCAATAAGGAAGATAATGTTTTATTACCAGCA 237
Query 246 ACAGCTCAAATTTCAGCACCTCCAGTTCTACAAGATGCCTCGTCTCTGCCAGGTTTCTCT 305
||||||||||| ||||||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 238 ACAGCTCAAATCACAGCACCTCCAATTCTACAAGATGCCACGTCTCAGCCAGGTTTCTCT 297
Query 306 GCCATTCCACCTGTGGTTCCTCCTTCTTTTCCCCCACCAATGGCTCCAATACCTATGATG 365
||||| ||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct 298 GCCATACCACCGGTGG------------TTCCCCCACCAATGGCTCCAATACCAATGATG 345
Query 366 CCACATCCTCCAGTTGCCCGCCCACCTACTTTTAGGCCACCTGTTTCACAAAATGGTGGA 425
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 346 CCACATCCTCCAGTTACCCGCCCACCTACTTTTAAGCCACCTGTTTCACAAAATGGTAGA 405
Query 426 GTGAAAACCAGTGACTCGGATTCGGAATCAGATGATGAACATATTGAGATATCTGAAGAG 485
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 406 GCGAAAACCAGTGACTCGGATTCGGAATCAGATGATGAACATTTTGAGATATCTGAGGAG 465
Query 486 AGTAAGCAGGTCAGAGAAAGACAGGAAAAGGCATTGCAAGATTTGTTGGTAAAGCGTCGT 545
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 466 AGTAGGCAGGTCAGAGAAAGACAGGAAAAGGCATTGCAAGACTTGTTGGTAAAGCGTCGT 525
Query 546 GCTGCTGCTATGGCAGTTCCAACAAATGACAAAGCTGTTAGGGACCGACTTAGACGACTT 605
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 526 GCTGCTGCTATGGCAGTTCCAACAAATGACAAAGCTGTTAGGGATCGCCTTAGACGACTT 585
Query 606 GGGGAGCCCATTACTCTATTTGGAGAACAGGAAATGGAGAGACGAGCTAGGCTGACTCAG 665
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 586 GGGCAGCCCATTACTCTATTTGGAGAACAGGAAATGGAGAGAAGAGCTAGGTTGACTCAG 645
Query 666 CTGTTGACTAGG-TATGATATCAATGGGCAATTGGATAAACTGGTTAAAGATCACGAAGA 724
|| ||| ||||| | |||||| |||||||| ||||||||||| ||| || ||| |||||
Sbjct 646 CTTTTGGCTAGGCT-TGATATGGATGGGCAACTGGATAAACTGCTTATAGCTCAAGAAGA 704
Query 725 AGATGTGACTCCAAAAGAGGAAGTAGATGATGAAGTTCTTGAATACCCCTTTTTTACCGA 784
||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 705 AGATGTGGCTCCAAAAGAGGAAGTGGATGATGAAGTACTTGAATACCCCTTTTTTACCGA 764
Query 785 GGGTCCAAAGGAACTTAGAGAGGCTAGAATAGAAATTGCCAAGTTTTCTGTCAAGAGAGC 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GGGTCCAAAGGAACTTAGAGAGGCTAGAATAGAAATTGCCAAGTTTTCTGTCAAGAGAGC 824
Query 845 TGCTGTCAGGATTCAGCGTGCAAAGCGGCGGAGGGATGATCCAGATGAAGATATGGATGC 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TGCTGTCAGGATTCAGCGTGCAAAGCGGCGGAGGGATGATCCAGATGAAGATATGGATGC 884
Query 905 AGAGACTAAGTGGGCTTTAAAGCATGCTAAACACATGGCCCTTGATTGCAGTAATTTTGG 964
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 885 AGAGACTAAGTGGGCTTTAAAGCATGCTAAAAACATGGTCCTTGATTGCAGTAATTTTGG 944
Query 965 AGATGATCGTCCTCTTACCGGCTGCTCCTTCTCACGCGATGGAAAGATACTTGCCACATG 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AGATGATCGTCCTCTTACCGGCTGCTCCTTCTCACGCGATGGAAAGATACTTGCCACATG 1004
Query 1025 TTCTCTGAGTGGAGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACACGATTGCTGT 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TTCTCTGAGTGGAGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACACGATTGCTGT 1064
Query 1085 CTTGAAGGATCACAAAGAACGTGCAACTGATGTAGTGTTCTCCCCAGTGGATGATTGTCT 1144
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1065 CTTGAAGGATCACAAAGAACGTGCTACTGATGTAGTGTTCTCCCCTGTGGATGATTGTCT 1124
Query 1145 AGCGACTGCTTCTGCTGATCGAACTGCAAAGCTGTGGAAAACTGATGGAACACTCCTACA 1204
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AGCAACTGCTTCTGCTGATCGAACTGCAAAGCTGTGGAAAACTGATGGAACACTCCTACA 1184
Query 1205 AACGTTTGAAGGTCATTTGGATCGTCTGGCACGTGTTGCTTTCCACCCATCAGGGAAATA 1264
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1185 AACGTTTGAAGGTCATTTGGATCGCCTTGCACGTGTTGCTTTCCACCCATCAGGGAAATA 1244
Query 1265 CCTGGGAACTACAAGCTATGACAAGACGTGGAGATTGTGGGATATAAACACAGGAGCAGA 1324
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1245 CTTGGGAACTACAAGCTTTGACAAGACGTGGAGATTGTGGGATATAAACACAGGAGCTGA 1304
Query 1325 ACTGCTTTTGCAAGAAGGCCATAGCCGCAGTGTCTACGGAATTGCATTTCAACAAGATGG 1384
|||||||||||||||||| ||||| || |||||||| || ||||||||||||||||||||
Sbjct 1305 ACTGCTTTTGCAAGAAGGTCATAGTCGTAGTGTCTATGGGATTGCATTTCAACAAGATGG 1364
Query 1385 AGCATTAGCAGCTTCTTGTGGGCTTGATTCACTCGCACGAGTTTGGGATCTCCGCACTGG 1444
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1365 AGCATTAGCAGCTTCTTCTGGGCTTGATTCACTTGCACGAGTTTGGGATCTCCGCACTGG 1424
Query 1445 TAGGAGTATTCTTGTCTTCCAAGGACACATCAAACCGGTT---TTCTCCGTGAATTTCTC 1501
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1425 TAGGAGTATTCTTGTCTTCCAAGGACACATCAAACCGGTAAGATTCTCAGTGAATTTCTC 1484
Query 1502 TCCTAATGGTTATCACTTGGCATCTGGTGGGGAGGATAATCAATGCCGTATTTGGGATCT 1561
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1485 TCCTAATGGTTATCACTTGGCATCTGGTGGTGAGGATAATCAATGCCGTATTTGGGATCT 1544
Query 1562 AAGAATGAGAAAGTCATTGTACATTATACCAGCTCATGCTAACCTTGTGTCTCAAGTGAA 1621
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1545 AAGAATGAGAAAGTCATTGTACATTATACCAGCTCATGCCAACCTTGTGTCTCAAGTGAA 1604
Query 1622 GTATGAGCCACAAGAAGGCTACTTTCTGGCCACTGCCTCATACGACATGAAAGTCAATAT 1681
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1605 GTATGAACCACAAGAAGGCTACTTTCTGGCCACTGCATCATACGACATGAAAGTCAATAT 1664
Query 1682 ATGGTCAGGAAGAGATTTCTCGCTCGTTAAAAGCTTAGCAGGGCATGAGTCAAAAGTCGC 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 ATGGTCAGGAAGAGATTTCTCGCTCGTTAAAAGCTTAGCAGGGCATGAGTCAAAAGTCGC 1724
Query 1742 CTCTCTAGATATCACAGCAGATAGCTCGTGTATCGCTACTGTATCACATGATCGCACCAT 1801
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1725 CTCTCTAGATATCACTGCAGATAGCTCGTGTATTGCAACTGTATCACATGATCGCACCAT 1784
Query 1802 CAAGCTATGGACAAGCAGTGGAAATGATGA---TGAAGACGAA-GAGAAAGAAACAATGG 1857
|||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 1785 CAAGCTCTGGACAAGCAGTGGAAATGATGAAGATGAAGA-GAAAGAGAAAGAAACAATGG 1843
Query 1858 ACATAGATCTCTAGTTTCATTTTTCATGTTTGTGCAAGaaaaaaaaCTTGGGATCTAGGG 1917
|||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1844 ACATAGATCTCTAGTTTCATTTTTCATGTTTGTGCAAGAAAAAAAA------AT-TAGC- 1895
Query 1918 ATTTCGAGATTAGCTTGTTAGAGAAACTCATTAAATTGTATTTGATCTCTTGTCGGGAAT 1977
|| | |||| |||||| |||||||| ||||| ||| |||||||||||||
Sbjct 1896 -TT--G---TTAG------AGAGAA--TCATTAAACGGTATT-GATATCTTGTCGGGAAT 1940
Query 1978 TATAGAAACTCAGGATGCTGATACATTGTCTT-GAAAATTTTGCCATTTCGTTCAACAAA 2036
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1941 TATAGAAACTCAGGATGATGATACATTGTCTTTGAAAATTTTGCCATTTCGTTCAACAAA 2000
Query 2037 AA 2038
||
Sbjct 2001 AA 2002
> Ahg930881 jgi|Araly1|930881|scaffold_303338.1
Length=1059
Score = 1077 bits (583), Expect = 0.0
Identities = 825/941 (88%), Gaps = 20/941 (2%)
Strand=Plus/Plus
Query 962 TGGAGATGATCGTCCTCTTACCGGCTGCTCCTTCTCACGCGATGGAAAGATACTTGCCAC 1021
||| ||||||||||||||||| || |||||||| ||||| |||||||| ||||| || ||
Sbjct 128 TGGGGATGATCGTCCTCTTACTGGTTGCTCCTTGTCACGAGATGGAAAAATACTCGCAAC 187
Query 1022 ATGTTCTCTGAGTGGAGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACACGATTGC 1081
||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 188 ATGTTCTCTTAGTGGGGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACAAGATTGA 247
Query 1082 TGTCTTGAAGGATCACAAAGAACGTGCAACTGATGTAGTGTTCTCCCCAGTGG---ATGA 1138
||||||||| ||||||||||||| ||||||||||||||||||||| || |||| ||||
Sbjct 248 TGTCTTGAAAGATCACAAAGAACATGCAACTGATGTAGTGTTCTCGCCTGTGGATTATGA 307
Query 1139 TTGTCTAGCGACTGCTTCTGCTGATCGAACTGCAAAGCTGTGGAAAACTGATGGAACACT 1198
||||||||| ||||||||| ||||||||||||| ||| ||||||| | ||||||||||||
Sbjct 308 TTGTCTAGCAACTGCTTCTACTGATCGAACTGCGAAGTTGTGGAATATTGATGGAACACT 367
Query 1199 CCTACAAACGTTTGAAGGTCATTTGGATCGTCTGGCACGTGTTGCTTTCCACCCATCAGG 1258
| ||||||| ||| |||||||||||||||| || ||||| |||| ||||| ||||| ||
Sbjct 368 CTTACAAACTTTTAAAGGTCATTTGGATCGGCTTGCACGCATTGCATTCCATCCATCGGG 427
Query 1259 GAAATACCT-GGGAACTACAAGCTATGACAAGACGTGGAGATTGTGGGATATAAACACAG 1317
||||||||| ||| || || || | |||||| || |||||||||||||||||||| ||||
Sbjct 428 GAAATACCTAGGG-ACAACGAGTTTTGACAAAACATGGAGATTGTGGGATATAAATACAG 486
Query 1318 GAGCAGA-ACTGCTTTTGCAAGAAGGCCATAGCCGCAGTGTCTACGGAATTGCATTTCAA 1376
|| || | | |||| ||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 487 GAATTGAGA-TTCTTTCGCAAGGAGGTCATAGCCGTAGTGTCTACGGAATTGCATTTCAA 545
Query 1377 CAAGATGGAGCATTAGCAGCTTCTTGTGGGCTT-GATTCACTCGCACGAGTTTGGGATCT 1435
|||||||||||||||| |||||||| ||| || |||||||| |||||||||||||||||
Sbjct 546 CAAGATGGAGCATTAGTAGCTTCTTC-GGGTTTTGATTCACTTGCACGAGTTTGGGATCT 604
Query 1436 CCGCACTGGTAGGAGTATTCTTGTCTTCCAAGGACACATCAAACCGGTTTTCTCCGTGAA 1495
|| ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| |
Sbjct 605 TCGTACTGGTAAGAGTATTCTTGTCTTCCAAGGACATATCAAACCGGTTCTCTCAGTGGA 664
Query 1496 TTTCTCTCCTAATGGTTATCACTTGGCATCTGGTGGGG-AGGATAATCAATGCCGTATTT 1554
||| ||||||||||| || || |||||||||||||| | || ||||||||||||||||||
Sbjct 665 TTTTTCTCCTAATGGCTACCATTTGGCATCTGGTGGTGTAG-ATAATCAATGCCGTATTT 723
Query 1555 GGGATCTAAGAATGAGAAAGTCATTGTACATTATACCAGCTCATGCT-AACCTTGTGTCT 1613
|||||||| ||||||||||||| || ||||||||||||||||||| | |||||||| |||
Sbjct 724 GGGATCTACGAATGAGAAAGTCGTTATACATTATACCAGCTCATG-TGAACCTTGTTTCT 782
Query 1614 CAAGTGAAGTATGAGCCACAAGAAGGCTACTTTCT-GGCCACTGCCTCATACGACATGAA 1672
||||| |||||||| ||||||||||| || ||||| ||| ||||||||||||||||||||
Sbjct 783 CAAGTAAAGTATGAACCACAAGAAGGGTA-TTTCTTGGCTACTGCCTCATACGACATGAA 841
Query 1673 AGTCAATATATGGTCAGGAAGAGATTTCTCGCTCGTTAAAAGCTTAGCAGGGCATGAGTC 1732
||| |||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||
Sbjct 842 AGTTAATATATGGTCAGGTAGAGATTTCTCGCTTGTTAAAAGCTTAGTAGGACATGAGTC 901
Query 1733 AAAAGTCGCCTCTCTAGATATCACAGC-AGATAGCTCGTGTATCGCTACTGTATCACATG 1791
|||||| | |||||||||||| | | ||||||||| |||||||| | ||| || ||||
Sbjct 902 CAAAGTCTCATCTCTAGATATCGCT-CTAGATAGCTCATGTATCGCAAGTGTTTCGCATG 960
Query 1792 ATCGCACCATCAAGCTATGGACAAGCAGTGGAAATGATGATGAAGACGAAGAGAAAGAAA 1851
| |||||||||||||| |||||||||||||| |||||||| | ||| ||| || |||||
Sbjct 961 ACCGCACCATCAAGCTTTGGACAAGCAGTGGGAATGATGA--A-GACAAAGGGAGAGAAA 1017
Query 1852 CAATGGACATAGATCTCTAGTTTCATTTTTCATGTTTGTGC 1892
||||||||||||| |||||||||| ||||| || |||||||
Sbjct 1018 CAATGGACATAGAGCTCTAGTTTCTTTTTTTATATTTGTGC 1058
> Ahg483226 jgi|Araly1|483226|fgenesh2_kg.4__2286__AT2G41490.1
Length=1467
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Minus
Query 2008 TTGAAAATTTTGCCATTTCGTTCAACAAAAA 2038
|||||||||||||||||||||||||||||||
Sbjct 1467 TTGAAAATTTTGCCATTTCGTTCAACAAAAA 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77475558330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5