BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41510.1 Length=1964 Score E Sequences producing significant alignments: (Bits) Value Ahg483228 jgi|Araly1|483228|fgenesh2_kg.4__2288__AT2G41510.1 2963 0.0 > Ahg483228 jgi|Araly1|483228|fgenesh2_kg.4__2288__AT2G41510.1 Length=1911 Score = 2963 bits (1604), Expect = 0.0 Identities = 1819/1921 (95%), Gaps = 21/1921 (1%) Strand=Plus/Plus Query 11 AGTACTCTAAACCTCAAGTTTACCTCTACTTCTCTTATACCATTCCGCCTCTTATTCTTT 70 |||||||| |||||||| |||||||||||||| || ||||||||||| | | ||||| Sbjct 1 AGTACTCTTAACCTCAACTTTACCTCTACTTCCCTCATACCATTCCG-C-C----TCTTT 54 Query 71 GCAATTTCTCTCAACAAAGTAGAAATGGGATTGACCTCATCCTTACGGTTCCATAGACAA 130 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 55 GCAATTTCTCTCAAGAAAGTAGAAATGGGATTGACCTCATCCTTACGGTTCCATAGACGA 114 Query 131 AACAACAAGACTTTCCTCGGAATCTTCATGATCTTGGTTCTAAGCTGTATACCAGGTAGA 190 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 115 AACAACAAGACTTTCCTCAGAATCTTCATGATCTTGGTTCTAAGCTGTATACCAGGTAGA 174 Query 191 ACCAATCTTTGTTCCAATCATTCTGTTAGTACCCCAAAAGAATTACCTTCTTCAAATCCT 250 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 175 ACCAATCTTTGTTCCAATCATTCTGTTAGTACCCCGAAAGAATTACCTCCTTCAAATCCT 234 Query 251 TCAGATATTCGTTCCTCATTAGTTTCACTAGATTTGGAGGGTTATATAAGCTTCGACGAT 310 ||||||||||||| || ||||||||||||||||||||||||| |||||||| |||||| Sbjct 235 CCAGATATTCGTTCTTCCTTAGTTTCACTAGATTTGGAGGGTTGCATAAGCTTTGACGAT 294 Query 311 GTCCACAATGTGGCCAAGGACTTTGGCAACAGATACCAGTTACCACCTTTGGCAATTCTA 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 GTCCACAATGTGGCCAAGGACTTTGGCAACAGATACCAGTTACCACCTTTGGCAATTCTA 354 Query 371 CATCCAAGGTCAGTTTTTGATATTTCATCGATGATGAAGCATATAGTACATCTGGGCTCC 430 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 CATCCAAGGTCTGTTTCTGATATTTCATCGATGATGAAGCATATAGTACATCTGGGCTCC 414 Query 431 ACCTCAAATCTTACAGTAGCAGCTAGAGGCCATGGTCACTCGCTTCAAGGACAAGCTCTA 490 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 415 ACCTCAAATCTCACAGTAGCAGCCAGAGGCCATGGTCACTCGCTTCAAGGACAATCTCTA 474 Query 491 GCTCATCAAGGTGTTGTCATCAAAATGGAGTCACTTCGAAGTCCTGATATCAGGATTTAT 550 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 475 GCTCATCAAGGTGTTGTCATCAAAATGGAGTCACTTAGAAGTCCTGATATCAGGATTTAC 534 Query 551 AAGGGGAAGCAACCATATGTTGATGTCTCAGGTGGTGAAATATGGATAAACATTCTACGC 610 |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 535 AAGGGGAAGCAACCGTATGTTGATGTCTCAGGTGGTGAACTATGGATCAACATTCTACGG 594 Query 611 GAGACTCTAAAATACGGTCTTTCACCAAAGTCCTGGACAGACTACCTTCATTTGACCGTT 670 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 595 GAGACTCTAAAATACGGTCTTTCACCAAAGTCCTGGACAGACTACCTTCATCTGACCGTT 654 Query 671 GGAGGTACACTATCTAATGCTGGAATCAGCGGTCAAGCATTCAAGCATGGACCCCAAATC 730 |||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||| Sbjct 655 GGAGGTACTCTATCTAACGCTGGAATCAGTGGTCAAGCCTTCAAGCATGGACCCCAAATC 714 Query 731 AACAACGTCTACCAGCTAGAGATTGTTACAGGGAAAGGAGAAGTCGTAACCTGTTCTGAG 790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 AACAACGTCTACCAGCTAGAGATTGTTACAGGGAAAGGAGAAGTCGTAACCTGTTCTGAG 774 Query 791 AAGCGGAATTCTGAACTTTTCTTCAGTGTTCTTGGCGGGCTTGGACAGTTTGGCATAATC 850 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 AAGAAGAATTCTGAACTTTTCTTCAGTGTTCTTGGCGGGCTTGGACAGTTTGGCATAATC 834 Query 851 ACCCGGGCACGGATCTCTCTTGAACCAGCACCGCATATGGTTAAATGGATCAGGGTACTC 910 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 835 ACTCGGGCACGGATCTCTCTTGAACCAGCACCGCAAATGGTTAAATGGATCAGGGTACTC 894 Query 911 TACTCTGACTTTTCTGCATTTTCAAGGGACCAAGAATATCTGATTTCGAAGGAGAAAACT 970 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 895 TACTCTGATTTTTCTGCATTTTCAAGGGACCAAGAACATCTGATTTCGAAGGAGAAAACT 954 Query 971 TTTGATTACGTTGAAGGATTTGTGATAATCAATAGAACAGACCTTCTCAATAATTGGCGA 1030 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 955 TTTGATTACGTTGAAGGATTTGTGATAATCAATAGAACAGACCTCCTCAATAATTGGAGA 1014 Query 1031 TCGTCATTCAGTCCCAACGATTCCACACAGGCAAGCAGATTCAAGTCAGATGGGAAAACT 1090 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1015 TCGTCATTCAGTCCCAACGATTCCACACAGGCAAGCAGATTCAAGTCAGATGGAAAAACT 1074 Query 1091 CTTTATTGCCTAGAAGTGGTCAAATATTTCAACCCAGAAGAAGCTAGCTCTATGGATCAG 1150 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 1075 CTTTATTGCCTAGAAGTGGTCAAATATTTCAACCCAGAAGAAGCTAACTCTATGCATCAG 1134 Query 1151 GAAACTGGCAAGTTACTTTCAGAGTTAAATTATATTCCATCCACTTTGTTTTCATCTGAA 1210 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 GAAACCGGCAAGTTACTTTCAGAGTTAAATTATATTCCATCCACTTTGTTTTCATCTGAA 1194 Query 1211 GTGCCATATATCGAGTTTCTGGATCGCGTGCATATCGCAGAGAGAAAACTAAGAGCAAAG 1270 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1195 GTGCCATATATCGAGTTTCTGGATCGCGTGCATATCGCAGAGAGAAAACTGAGAGCAAAG 1254 Query 1271 GGTTTATGGGAGGTTCCACATCCCTGGCTGAATCTCCTGATTCCTAAGAGCAGCATATAC 1330 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| Sbjct 1255 GGTTTATGGGAGGTTCCACATCCCTGGCTGAATCTCCTGATTCCCAAGCGCAACATATTT 1314 Query 1331 CAATTTGCTACAGAAGTTTTCAACAACATTCTCACAAGCAACAACAACGGTCCTATCCTT 1390 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1315 CAATTTGCTACAGAAGTTTTCAACAACATTCTCACAAGCAACAATAACGGCCCTATCCTT 1374 Query 1391 ATTTATCCAGTCAATCAATCCAAGTGGAAGAAACATACATCTTTGATAACTCCAAATGAA 1450 || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1375 ATATATCCAGTCAATCAATCCAAGTGGAACAAACATACGTCTTTGATAACTCCAAATGAA 1434 Query 1451 GATATATTCTATCTCGTAGCCTTTCTCCCCTCTGCAGTGCCAAATTCCTCAGGGAAAAAC 1510 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 GATATCTTCTATCTCGTGGCCTTTCTCCCCTCTGCAGTGCCAAATTCCTCAGGGAAAAAC 1494 Query 1511 GATCTAGAGTACCTTTTGAAACAAAACCAAAGAGTTATGAACTTCTGCGCAGCAGCAAAC 1570 ||| ||||| |||||||||||||||||||||||||||| | |||||| | |||||||||| Sbjct 1495 GATTTAGAGCACCTTTTGAAACAAAACCAAAGAGTTATTAGCTTCTGTGGAGCAGCAAAC 1554 Query 1571 CTCAACGTGAAGCAGTATTTGCCCCATTATGAAACTCAAAAAGAGTGGAAATCACACTTT 1630 ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| Sbjct 1555 CTCAACGTGAAGCAGTATTTGCCTCATTATGAAACCCAACAAGAGTGGAAATCACACTTT 1614 Query 1631 GGCAAAAGATGGGAAACATTTGCACAGAGGAAACAAGCCTACGACCCTCTAGCGATTCTA 1690 ||||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||||| Sbjct 1615 GGCAATAGATGGGAAACATTTGCACAGAGGAAACATGCCTACGACCCTCAAGGGATTCTA 1674 Query 1691 GCACCTGGCCAAAGAATATTCCAAAAGACAACAGGAAAATTATCTCCCATCCAACTCGCA 1750 || ||||| || ||||||||||||||||||||| || ||||||||||||| |||||| || Sbjct 1675 GCCCCTGGGCAGAGAATATTCCAAAAGACAACAAGACAATTATCTCCCATACAACTCTCA 1734 Query 1751 AAGTCAAAGGCAACAGGAAGTCCTCAAAGGTACCATTAC-G----CATCAATA--CTGCC 1803 ||||||||||||||||||||||||||||||||||| || | |||||||| ||||| Sbjct 1735 AAGTCAAAGGCAACAGGAAGTCCTCAAAGGTACCACTAGAGAGAGCATCAATATACTGCC 1794 Query 1804 GAAACCTAGAACTGTATAAAAGTTTCCTGTGTCCGTCCTTGTAACCGCTCAGGCTAGGCA 1863 ||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||| Sbjct 1795 AAAACCTAGAACTGTATAAAAGTTTCCTGTGTCC-T--T-GTAACGGCTCAGGCTAGGCA 1850 Query 1864 GCAAGAAAGTGAAAAA-TTCTTTCTTTTTT---GTTTCTTTTGGTGAACAACAAATTTTA 1919 |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1851 GCAAGAGAGTGAAAAAATTCTTTCTTTTTTTTCGTTTCTTTTGGTGAACAACAAATTTTA 1910 Query 1920 C 1920 | Sbjct 1911 C 1911 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73818894810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5