BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41510.1
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483228 jgi|Araly1|483228|fgenesh2_kg.4__2288__AT2G41510.1 2963 0.0
> Ahg483228 jgi|Araly1|483228|fgenesh2_kg.4__2288__AT2G41510.1
Length=1911
Score = 2963 bits (1604), Expect = 0.0
Identities = 1819/1921 (95%), Gaps = 21/1921 (1%)
Strand=Plus/Plus
Query 11 AGTACTCTAAACCTCAAGTTTACCTCTACTTCTCTTATACCATTCCGCCTCTTATTCTTT 70
|||||||| |||||||| |||||||||||||| || ||||||||||| | | |||||
Sbjct 1 AGTACTCTTAACCTCAACTTTACCTCTACTTCCCTCATACCATTCCG-C-C----TCTTT 54
Query 71 GCAATTTCTCTCAACAAAGTAGAAATGGGATTGACCTCATCCTTACGGTTCCATAGACAA 130
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 55 GCAATTTCTCTCAAGAAAGTAGAAATGGGATTGACCTCATCCTTACGGTTCCATAGACGA 114
Query 131 AACAACAAGACTTTCCTCGGAATCTTCATGATCTTGGTTCTAAGCTGTATACCAGGTAGA 190
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AACAACAAGACTTTCCTCAGAATCTTCATGATCTTGGTTCTAAGCTGTATACCAGGTAGA 174
Query 191 ACCAATCTTTGTTCCAATCATTCTGTTAGTACCCCAAAAGAATTACCTTCTTCAAATCCT 250
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 175 ACCAATCTTTGTTCCAATCATTCTGTTAGTACCCCGAAAGAATTACCTCCTTCAAATCCT 234
Query 251 TCAGATATTCGTTCCTCATTAGTTTCACTAGATTTGGAGGGTTATATAAGCTTCGACGAT 310
||||||||||||| || ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 235 CCAGATATTCGTTCTTCCTTAGTTTCACTAGATTTGGAGGGTTGCATAAGCTTTGACGAT 294
Query 311 GTCCACAATGTGGCCAAGGACTTTGGCAACAGATACCAGTTACCACCTTTGGCAATTCTA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GTCCACAATGTGGCCAAGGACTTTGGCAACAGATACCAGTTACCACCTTTGGCAATTCTA 354
Query 371 CATCCAAGGTCAGTTTTTGATATTTCATCGATGATGAAGCATATAGTACATCTGGGCTCC 430
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CATCCAAGGTCTGTTTCTGATATTTCATCGATGATGAAGCATATAGTACATCTGGGCTCC 414
Query 431 ACCTCAAATCTTACAGTAGCAGCTAGAGGCCATGGTCACTCGCTTCAAGGACAAGCTCTA 490
||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 415 ACCTCAAATCTCACAGTAGCAGCCAGAGGCCATGGTCACTCGCTTCAAGGACAATCTCTA 474
Query 491 GCTCATCAAGGTGTTGTCATCAAAATGGAGTCACTTCGAAGTCCTGATATCAGGATTTAT 550
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 475 GCTCATCAAGGTGTTGTCATCAAAATGGAGTCACTTAGAAGTCCTGATATCAGGATTTAC 534
Query 551 AAGGGGAAGCAACCATATGTTGATGTCTCAGGTGGTGAAATATGGATAAACATTCTACGC 610
|||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 535 AAGGGGAAGCAACCGTATGTTGATGTCTCAGGTGGTGAACTATGGATCAACATTCTACGG 594
Query 611 GAGACTCTAAAATACGGTCTTTCACCAAAGTCCTGGACAGACTACCTTCATTTGACCGTT 670
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 595 GAGACTCTAAAATACGGTCTTTCACCAAAGTCCTGGACAGACTACCTTCATCTGACCGTT 654
Query 671 GGAGGTACACTATCTAATGCTGGAATCAGCGGTCAAGCATTCAAGCATGGACCCCAAATC 730
|||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 655 GGAGGTACTCTATCTAACGCTGGAATCAGTGGTCAAGCCTTCAAGCATGGACCCCAAATC 714
Query 731 AACAACGTCTACCAGCTAGAGATTGTTACAGGGAAAGGAGAAGTCGTAACCTGTTCTGAG 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AACAACGTCTACCAGCTAGAGATTGTTACAGGGAAAGGAGAAGTCGTAACCTGTTCTGAG 774
Query 791 AAGCGGAATTCTGAACTTTTCTTCAGTGTTCTTGGCGGGCTTGGACAGTTTGGCATAATC 850
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAGAAGAATTCTGAACTTTTCTTCAGTGTTCTTGGCGGGCTTGGACAGTTTGGCATAATC 834
Query 851 ACCCGGGCACGGATCTCTCTTGAACCAGCACCGCATATGGTTAAATGGATCAGGGTACTC 910
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 835 ACTCGGGCACGGATCTCTCTTGAACCAGCACCGCAAATGGTTAAATGGATCAGGGTACTC 894
Query 911 TACTCTGACTTTTCTGCATTTTCAAGGGACCAAGAATATCTGATTTCGAAGGAGAAAACT 970
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 895 TACTCTGATTTTTCTGCATTTTCAAGGGACCAAGAACATCTGATTTCGAAGGAGAAAACT 954
Query 971 TTTGATTACGTTGAAGGATTTGTGATAATCAATAGAACAGACCTTCTCAATAATTGGCGA 1030
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 955 TTTGATTACGTTGAAGGATTTGTGATAATCAATAGAACAGACCTCCTCAATAATTGGAGA 1014
Query 1031 TCGTCATTCAGTCCCAACGATTCCACACAGGCAAGCAGATTCAAGTCAGATGGGAAAACT 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 TCGTCATTCAGTCCCAACGATTCCACACAGGCAAGCAGATTCAAGTCAGATGGAAAAACT 1074
Query 1091 CTTTATTGCCTAGAAGTGGTCAAATATTTCAACCCAGAAGAAGCTAGCTCTATGGATCAG 1150
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1075 CTTTATTGCCTAGAAGTGGTCAAATATTTCAACCCAGAAGAAGCTAACTCTATGCATCAG 1134
Query 1151 GAAACTGGCAAGTTACTTTCAGAGTTAAATTATATTCCATCCACTTTGTTTTCATCTGAA 1210
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GAAACCGGCAAGTTACTTTCAGAGTTAAATTATATTCCATCCACTTTGTTTTCATCTGAA 1194
Query 1211 GTGCCATATATCGAGTTTCTGGATCGCGTGCATATCGCAGAGAGAAAACTAAGAGCAAAG 1270
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1195 GTGCCATATATCGAGTTTCTGGATCGCGTGCATATCGCAGAGAGAAAACTGAGAGCAAAG 1254
Query 1271 GGTTTATGGGAGGTTCCACATCCCTGGCTGAATCTCCTGATTCCTAAGAGCAGCATATAC 1330
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 1255 GGTTTATGGGAGGTTCCACATCCCTGGCTGAATCTCCTGATTCCCAAGCGCAACATATTT 1314
Query 1331 CAATTTGCTACAGAAGTTTTCAACAACATTCTCACAAGCAACAACAACGGTCCTATCCTT 1390
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1315 CAATTTGCTACAGAAGTTTTCAACAACATTCTCACAAGCAACAATAACGGCCCTATCCTT 1374
Query 1391 ATTTATCCAGTCAATCAATCCAAGTGGAAGAAACATACATCTTTGATAACTCCAAATGAA 1450
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1375 ATATATCCAGTCAATCAATCCAAGTGGAACAAACATACGTCTTTGATAACTCCAAATGAA 1434
Query 1451 GATATATTCTATCTCGTAGCCTTTCTCCCCTCTGCAGTGCCAAATTCCTCAGGGAAAAAC 1510
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GATATCTTCTATCTCGTGGCCTTTCTCCCCTCTGCAGTGCCAAATTCCTCAGGGAAAAAC 1494
Query 1511 GATCTAGAGTACCTTTTGAAACAAAACCAAAGAGTTATGAACTTCTGCGCAGCAGCAAAC 1570
||| ||||| |||||||||||||||||||||||||||| | |||||| | ||||||||||
Sbjct 1495 GATTTAGAGCACCTTTTGAAACAAAACCAAAGAGTTATTAGCTTCTGTGGAGCAGCAAAC 1554
Query 1571 CTCAACGTGAAGCAGTATTTGCCCCATTATGAAACTCAAAAAGAGTGGAAATCACACTTT 1630
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 1555 CTCAACGTGAAGCAGTATTTGCCTCATTATGAAACCCAACAAGAGTGGAAATCACACTTT 1614
Query 1631 GGCAAAAGATGGGAAACATTTGCACAGAGGAAACAAGCCTACGACCCTCTAGCGATTCTA 1690
||||| ||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 1615 GGCAATAGATGGGAAACATTTGCACAGAGGAAACATGCCTACGACCCTCAAGGGATTCTA 1674
Query 1691 GCACCTGGCCAAAGAATATTCCAAAAGACAACAGGAAAATTATCTCCCATCCAACTCGCA 1750
|| ||||| || ||||||||||||||||||||| || ||||||||||||| |||||| ||
Sbjct 1675 GCCCCTGGGCAGAGAATATTCCAAAAGACAACAAGACAATTATCTCCCATACAACTCTCA 1734
Query 1751 AAGTCAAAGGCAACAGGAAGTCCTCAAAGGTACCATTAC-G----CATCAATA--CTGCC 1803
||||||||||||||||||||||||||||||||||| || | |||||||| |||||
Sbjct 1735 AAGTCAAAGGCAACAGGAAGTCCTCAAAGGTACCACTAGAGAGAGCATCAATATACTGCC 1794
Query 1804 GAAACCTAGAACTGTATAAAAGTTTCCTGTGTCCGTCCTTGTAACCGCTCAGGCTAGGCA 1863
||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||
Sbjct 1795 AAAACCTAGAACTGTATAAAAGTTTCCTGTGTCC-T--T-GTAACGGCTCAGGCTAGGCA 1850
Query 1864 GCAAGAAAGTGAAAAA-TTCTTTCTTTTTT---GTTTCTTTTGGTGAACAACAAATTTTA 1919
|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1851 GCAAGAGAGTGAAAAAATTCTTTCTTTTTTTTCGTTTCTTTTGGTGAACAACAAATTTTA 1910
Query 1920 C 1920
|
Sbjct 1911 C 1911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73818894810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5