BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41520.1
Length=3820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934985 jgi|Araly1|934985|scaffold_402973.1 3136 0.0
> Ahg934985 jgi|Araly1|934985|scaffold_402973.1
Length=3344
Score = 3136 bits (1698), Expect = 0.0
Identities = 1875/1961 (96%), Gaps = 10/1961 (1%)
Strand=Plus/Plus
Query 1573 TCAGCCAGGGATTCATCTCTCTTCACGGCAGAGGATCATGGGAGTACTTGTATTCCGAAT 1632
|||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||
Sbjct 1389 TCAGCCAGGGATTCATTTCTCTTTACGGCAGAGGATCATGGGAGTAGTTGTATGCCGAAT 1448
Query 1633 TTTTCTTTCTCAGCGTCCACCTCTCAGGAAACAATACGACATAAAAAGCTTCAAGCTGTA 1692
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1449 TTTTCTTTCTCAGCGTCCACCTCTCAGGGAACAATACCACATAAAAAGCTTCAAGCTGTA 1508
Query 1693 AAGAAATATAGGAGGAAAGTTAACAACAGTTTGCCGAAAAGCAATCTTAATGCCACCATG 1752
|||||||||||||||||||| || |||||| |||| |||| |||||||||| ||||||||
Sbjct 1509 AAGAAATATAGGAGGAAAGTCAATAACAGTGTGCCCAAAAACAATCTTAATACCACCATG 1568
Query 1753 CGAAACAATCAAGAGAATCAACCTGTGAATACAGGTCAAGCCAAACAGGACTCGGGCTCC 1812
||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| |||||
Sbjct 1569 CGAAACAATGAAGAAAATCAACGTGTGAATACAGGTCAATCCAAACAGGACTCAGGCTCT 1628
Query 1813 ACATCGATGATGCCTGATGTCTGTGAGGTTTGGCGACTAAGGGGAAATCAAGCCTACAAA 1872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 ACATCGATGATGCCTGATGTCTGTGAGGTTTGGCGACTAAGGGGAAATCAAGCCTACAAA 1688
Query 1873 AATGGTTATATGTCTAAAGCTGAGGAATGTTACACACATGGTATTAATTCTTCTCCGTCA 1932
|||||| |||||| |||||||||||||||||||||||| ||||||| |||||| ||||||
Sbjct 1689 AATGGTAATATGTGTAAAGCTGAGGAATGTTACACACACGGTATTAGTTCTTCCCCGTCA 1748
Query 1933 AAAGATAATTCAGAATACTCTGTGAAGCCTCTTGCGCTTTGCTATGGTAACCGCGCCGCA 1992
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 AATGATAATTCAGAATACTCTGTGAAGCCTCTTGCGCTTTGCTATGGTAACCGCGCCGCA 1808
Query 1993 GCACGGATTTCTCTTGGAAGATTGAGGGAGGCTATAAGCGACTGTGAGATGGCTGCCTCA 2052
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 GCCCGGATTTCTCTTGGAAGATTGAGGGAGGCTATAAGCGACTGTGAGATGGCTGCCTCA 1868
Query 2053 CTTGATCCTAGCTACATTAAAGCGTATATGAGAGCTGCAAATTGTCATCTTGTGCTGGGG 2112
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1869 CTTGATCCAAGCTACATTAAAGCGTATACGAGAGCTGCAAATTGTCATCTTGTGCTGGGG 1928
Query 2113 GAACTTGGATCAGCAGTGCAGTATTTTAATAAATGCATGAAATCCACCTCTAGTGTCTGC 2172
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1929 GAACTTGGAGCAGCAGTGCAGTATTTTAATAAATGCATGGAATCCACCTCTAGTGTCTGC 1988
Query 2173 TTGGATCGACGAACTACTATAGAAGCAGCTGAAGGTTTACAACAGGCTCAAAGGGTAGCT 2232
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1989 TTGGATCGACGAACTACTATAGAAGCAGCTGAAGGTTTACAACGGGCTCAAAGGGTAGCT 2048
Query 2233 GACTTTACCAGCTGTGCATCC-ATATTTTTGGAAAAGAGAACACCTGATGGCGCATCTGA 2291
|||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 2049 GACTTTACCAGCTGCGCATCCAAT-TTTTTGGAAAAGAGAACACCCGATGGCGCATCTGA 2107
Query 2292 CGCATTGGTTCCAATTGCCAATGCCTTATCAATTAGTTCATGCTCAGATAAATTGCTTCA 2351
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2108 CGCATTGGTTCCAATTGCCAATGCCTTAACAATTAGTTCATGCTCAGATAAATTGCTTCA 2167
Query 2352 AATGAAGGCCGAGGCCCTATTTATGATCCGACGATATAAAGAAGTTATTGAGCTTTGTGA 2411
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 2168 AATGAAGGCCGAGGCCCTATTTATGATCCGACGATATAAAGAAGTGATCGAGCTGTGTGA 2227
Query 2412 GAATACCCTTCAGACTGCTGAGAGGAATTTTGTTTCAGCAGGGATTGGTGGGACGACAAA 2471
||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2228 GAATACCCTTCAGACGGCTGAGAGGAATTTTGTTTCAGCAGGGCTTAGTGGGACGACAAA 2287
Query 2472 TGTTAATGGATTAGGGTCTACGTATCACTCGCTAATAGTTTGGAGATGGAACAAAATTTC 2531
|||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 2288 TGTTGATGGATTAGGGTCTACATATCACTCGCTAATAGTTTGGAGATGGAACATGATTTC 2347
Query 2532 CAAGTCGCACTTCTACTTGGGAAACCTTGAGAAGGCCCTTGATATATTAGAAAAGTTACA 2591
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2348 CAAGTCGCACTTCTACTTGGGAAACCTTGAGAAGGCCCTTGATATATCAGAAAAGTTACA 2407
Query 2592 GCAAGTGGAATATACCTGCAATGAAAATCAGGAAGAGTGTCGTGAGTCACCAGCTTCTTT 2651
|||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2408 GCAAGTGGGATATACCTGCAATGAGAATCATGAAGAGTGTCGTGAGTCACCAGCTTCTTT 2467
Query 2652 AGTGGCCACCATTTCTGAACTCTTACGTTACAAGAACGCAGGTAATGAAGCTGTTCGGGA 2711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2468 AGTGGCCACCATTTCTGAACTCTTACGTTACAAGAACGCAGGTAATGAAGCTGTTCGGGA 2527
Query 2712 CAGAAAGTATATGGAAGCAGTAGAGCAGTATACTGCTGCACTATCAAGAAATGTTGACTC 2771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2528 CAGAAAGTATATGGAAGCAGTAGAGCAGTATACTGCTGCACTATCAAGAAATGTTGACTC 2587
Query 2772 ACGCCCTTTTGCAGCAATTTGCTTCTGCAATCGTGCGGCTGCTAATCAGGCCCTAGTTCA 2831
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2588 ACGCCCGTTTGCAGCAATTTGCTTTTGCAATCGTGCGGCTGCTAATCAGGCCCTAGTCCA 2647
Query 2832 AATTGCTGATGCAATTGCCGACTGTAGTCTTGCCATGGCTCTTGATGAAAACTACACAAA 2891
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2648 AATTGCCGATGCAATTGCCGACTGTAGTCTTGCCATGGCTCTTGATGAAAACTACACAAA 2707
Query 2892 GGCAGTTTCCAGGAGAGCCACATTACATGAGATGATCAGAGACTATGATCAAGCAGCTAG 2951
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2708 GGCAGTTTCCAGGAGAGCCACATTACATGAGATGATCAGAGATTATGATCAAGCAGCTAG 2767
Query 2952 TGATCTCCAGAGACTTATCAGCATTCTCGTAAAGCAAAGTGATAAAACAAAAACGCCAGA 3011
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2768 TGATCTCCAGAGGCTTATCAGCATTCTTGTAAAGCAAAGTGATAAGACAAAAACGCCAGA 2827
Query 3012 GACATCTG-TCGATCGTGCAAGTAGCAGGAAAGAACTAAAGCAGGCCCGTCAACGGTTGT 3070
|| |||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2828 GATTTCTGCT-GATCGTGCAAGCAGCAGGAAAGAACTAAAGCAGGCCCGTCAACGGTTGT 2886
Query 3071 CTGTGATGGAAGAAAAATCTAAAGAGGGAATTCATCTGGATTTCTTCCTAATCATGGGAG 3130
||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||
Sbjct 2887 CTGTGATGGAAGAAAAATCTAAAGAAGGCATTCCTCTGGATTTCTTCCTCATCATGGGAG 2946
Query 3131 TGAAGACATCTGACTCTGCTGCTGATATCAAAAAGGCATACCGCAAAGCAGCTCTTAGAC 3190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2947 TGAAGACATCTGACTCTGCTGCTGATATCAAAAAGGCATACCGCAAAGCAGCTCTTAGAC 3006
Query 3191 ATCACCCAGACAAAGCTGCACAGATTCTTGTCAGAAGCGAAAGTGAAGGACCATGGTTGA 3250
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 3007 ATCACCCAGACAAGGCTGCACAGATCCTTGTCAGAAGCGAAAGTGAAGGACCGTGGTTGA 3066
Query 3251 AGGAGATATTAGAAGAGGTTCACAAGGGTGCAGATAGGCTCTTCAAAATGATTGGAGAGG 3310
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3067 AGGAAATATTAGAAGAGGTTCACAAGGGTGCAGATAGGCTCTTCAAAATGATTGGAGAGG 3126
Query 3311 CATATTCAGTTCTTTCTGACCCAACTAAGAGGTCGGATTATGAACTTGAGGAAGAAATTA 3370
|||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||
Sbjct 3127 CATATTCAGTTCTTTCTGACCCAATTAAGAGGTCGGACTATGAACTTGATGAAGAGATTA 3186
Query 3371 GAAAAGCCAGGGCATCTAGAGAAAGCTACAGGAGCAGAAAGGCTGCAGAAGCAAGTAGCC 3430
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 3187 GAAAAGCCAGGGCATCTAGAGAAAGCTACAG-A--AGAAAGGCTGCAGAAGCAAGTAGCC 3243
Query 3431 CTCCATATCAGACAAGCAGGCGATACTGGAAGGACAGTTGGAGGACAAACCAAAACACGC 3490
||||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||
Sbjct 3244 CTCCATATCAGACAAGCAGGCGACATTGGAAGGACAGCGGGAGGACAAACCGAAACACGC 3303
Query 3491 CTTCTTGGTGGTAG-AA--GGCTAAAATTCTTGGTGGCGTA 3528
|||||||||||| | || ||||||||||||||||||||||
Sbjct 3304 CTTCTTGGTGGTGGTAAAAGGCTAAAATTCTTGGTGGCGTA 3344
Score = 1980 bits (1072), Expect = 0.0
Identities = 1288/1391 (93%), Gaps = 19/1391 (1%)
Strand=Plus/Plus
Query 158 tgaaagaatccaatttttGGATGTCTCCTGCGGCGGTGGAGATTGGGTCTCCGGTTGAAA 217
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAAAGAATCGAATTTTTGGATGTCTCCTGCGGCGGTGGAGATTGGGTCTCCGGTTGAAA 60
Query 218 AAGTCTCTTCTGTTC-TAAACCCTATGGAAAATTTCTCTGCATTTTTTCCGGAGAGTGTT 276
||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 AAGTCTCTTCT-TTCCTAAACCCTATGGATAATTTCTCTGCATTTTTCCCGGAGAGTGTT 119
Query 277 CACTCTCACGATCA-ACGAACCATGGGCTCTTCGTTCTCCTTCGGATTTGGAGCTGGTTC 335
|||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||
Sbjct 120 CACTCTCACGATCATA-GAACTATGGACTCTTCGTTCTCCTTCGGATTTGGAGCTGGTTC 178
Query 336 AGGACAAACCACGAAGACTCGACACAAGCCGAGGCTCGTGAAATTGAGGAAGAACGGAAG 395
||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 179 AGGACAAACGACGAAGACTCGGCAAAAGCCGAGGCTGGTGAAATTGAGGAAGAACGGAAG 238
Query 396 AGAGGTGAAAAAACCTTCTTTTTCCGGCGAGATCCTCTCAGGTTTCAATCCGTTTGCGCC 455
||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 239 AGAGGTGAAAAGACCCTCTTTTTCCGGCGAGATCCTCTCAGGTTTCAACCCGTTTGCGCC 298
Query 456 GCCGGGTAAAGGTAGTCTTCATATGAACAGTGGGAATGATAGAGATGCTGGCCAATCACC 515
||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 299 GCCAAGTAAAGGTAGTCTTCATATGAACAGTGGGAATGATAGAGCTGCTGGCGAATCACC 358
Query 516 TGGGGATAAATGTTTTGTCTTTGGAGCTAGTGGGAACAGTTCTGGTGCAAAATCTAGTCC 575
||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 359 TGGGGATAAATGTTTCGTCTTTGGAGCTACTGGGAACAGTTCTGGTGCAAAAGCTAGTCC 418
Query 576 AGGCAATGCCACAATAGCTTCTTTGTCTGATGAAGAGGAGTTTAGTACACCTATAGGGGA 635
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 419 AGGTAATGCCACAATAGCTTCTTTTTCTGATGAAGACGAGTTTAGTACACCTATAGGGGA 478
Query 636 CTCTGAGTTGGATTCGGAATCCATTAAAGAACATTCAAATGGAGTTAGGGGAAAGGTTGA 695
|||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||
Sbjct 479 CTCTGAGTTGGATTCGGAATCCATTAAAGACCATTCACATGGAGTTATGGGAAAGGTAGA 538
Query 696 TAATGATCGGGAAAACATCAGACCGTGTAGTGAGAGCACAATTTTTGATGCCACAAATGG 755
|||||||| ||||||||||||||| |||||||||||||||| || |||||| ||||||||
Sbjct 539 TAATGATCAGGAAAACATCAGACCATGTAGTGAGAGCACAACTTGTGATGCGACAAATGG 598
Query 756 ATTTAGGTTTGATGGTGGTGTTAACGGAAGCTGGAAAAGTGTTGAGAATCCAGATGCTGT 815
| ||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTTAAGCTTGATCGTGGTGTAAACGGAAGCTGGAAAAGTGTTGAGAATCCAGATGCTGT 658
Query 816 CAAGGAGTTTTTTCGAAGACAGAATGGCATGGACAAGGCATCAGCGAGTAAATCTTGTAG 875
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||
Sbjct 659 CAAGGAGTTTTTTCGAAGACAGTATGACATGGACAAGAAATCAGCGAGTAAATCTTGCAG 718
Query 876 CAAGTCTAACAGTGTACAATATGCTCATGGTAAAA------AT-A--GGGATGATCCTGA 926
||||||||||||||||||||||||| ||||||||| || | |||||| ||||||
Sbjct 719 CAAGTCTAACAGTGTACAATATGCTGATGGTAAAACTGTCGATCATAGGGATGGTCCTGA 778
Query 927 ATTGAACCTGCTTGCTGACATGGAGAAGCTTAATATCAGTGATTCCAGAGTTCATGGTGG 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 ATTGAACCTGCTTGCTGACATGGAGAAGCTTAATATCAGTGATTCCAGAGTTCATGGGGG 838
Query 987 CAGCGACTATGAGGAAGCAAGCAAATCCAATAAGACACCTGTATTTACTTTTAGTAGCTT 1046
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 839 TAGCGACTATGAGGAAGCAAGCAAATCTAATAACACACCTGTATTTACTTTTAGTAGCTT 898
Query 1047 TGGAAAGGTTGATCCTATATGTAAAGAAGGTGCGGCGACATCAGAG-CCATACTCGTTCA 1105
|||||||||||||||||||||||||||||||||| |||||||| || |||||||| || |
Sbjct 899 TGGAAAGGTTGATCCTATATGTAAAGAAGGTGCGTCGACATCA-AGGCCATACTCTTTTA 957
Query 1106 GTTCCAATGGTTTTCAGCAAAGTAATAATGC-GTCGGGTGAAAACCCCACTTTTCATTCC 1164
|||||||||||||||| |||||||||||||| | | | |||||| ||||||| |||||||
Sbjct 958 GTTCCAATGGTTTTCACCAAAGTAATAATGCAG-CAGATGAAAAACCCACTTCTCATTCC 1016
Query 1165 CAGACCACCTACGGAAACAACTTAACAAACACTAGCTTTGCTACAAAAACATTCTTTGAT 1224
|||||||| ||| |||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 1017 AAGACCACCAACGTAAACAACTTAACAAACACTAGCCTTGGTACAAAAACATCCTTTGAT 1076
Query 1225 GATTTCAAAGTACCTGAATGGGATCCTTCGTTGCTTAAG-GACAGTCTGTTTCCAGAAGT 1283
||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct 1077 GATTTCAAAGTACCTGAATGGGATCCTTCGTTGCTTAAGAGA-AGTCTATTTCCGGAAGT 1135
Query 1284 AGACAGAAATCCAGTACATGCGCGAAGTAATCGTTCGTCCAAGGACAAGAGATCAAAGAA 1343
| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AAACAGAAATCCAGTACTTGCACGAAGTAATCGTTCGTCCAAGGACAAGAGATCAAAGAA 1195
Query 1344 AGTTAAGGAAAAAATGAAACAGGGTGAGCCAGATCGATGCAATGGTCAAACTGCTGAGGG 1403
||| | ||||||||| |||||| || ||| |||||||||||| | ||| |||||||||||
Sbjct 1196 AGTCATGGAAAAAATAAAACAGCGTAAGCAAGATCGATGCAACGATCAGACTGCTGAGGG 1255
Query 1404 AATTGAGGCTCAAGAAAAACTCAATTCCCCTGGATATTGCTCACCCATGGATTATTCTCC 1463
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AATTGAGGCTCAGGAAAAACTCAATTCCCCTGGATATTGCTCACCCATGGATTATTCTCC 1315
Query 1464 TTATCAAGGTGACAAAACGAGCAATCAATTTCCAACAGAAACTCCCCTGGCACCATCACA 1523
|||||||||||| | | | ||||||||| |||||||||||||||| ||| |||| |||||
Sbjct 1316 TTATCAAGGTGAGACAGCCAGCAATCAACTTCCAACAGAAACTCCTCTGACACCCTCACA 1375
Query 1524 TTCAAGAGAAC 1534
|||||||||||
Sbjct 1376 TTCAAGAGAAC 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144352374389
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5