BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41530.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934986 jgi|Araly1|934986|scaffold_402974.1 1487 0.0
> Ahg934986 jgi|Araly1|934986|scaffold_402974.1
Length=898
Score = 1487 bits (805), Expect = 0.0
Identities = 867/898 (97%), Gaps = 0/898 (0%)
Strand=Plus/Plus
Query 166 TGAGTGAGATAGAGAGAGTGATAATGGCGAGTGGACTAAGCGAGATCGGGAGCACGAAGA 225
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1 TGAGTGAGATAGAGAGAGTGATAATGGAGAGTGGACTAAGAGAGATCGGGAGCACGAAGA 60
Query 226 TGTTCGATGGCTACAACAAAAGATACAAACACTTCAGTGAGACACTTGGATGTTCCATGA 285
||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 61 TGTTCGATGGCTACAACAAAAGATACAAACACTACAATGAGACACTCGGATGTTCCATGA 120
Query 286 CCTTTTCCATCTACTTCCCTCCTTCTGCTTCTTCTTCCCATAAATCTCCTGTGCTTTACT 345
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CCTTTTCCATCTACTTCCCTCCTTCTGCTTCATCTTCCCATAAATCTCCTGTGCTTTACT 180
Query 346 GGCTTTCTGGCCTCACCTGCACGGACGAGAACTTCATTATCAAATCAGGAGCTCAACGTG 405
||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 181 GGCTTTCTGGCCTCACCTGCACGGACGAGAACTTCTTTATCAAATCTGGGGCTCAACGTG 240
Query 406 CTGCTTCTACTCACGGCATTGCTCTTGTTGCTCCAGACACTTCTCCAAGAGGACTAAATG 465
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGCTTCGACTCACGGCATTGCTCTTGTTGCTCCAGACACTTCTCCAAGAGGACTAAATG 300
Query 466 TTGAAGGGGAGGCAGACAGTTACGACTTTGGTGTAGGAGCCGGATTCTACCTCAATGCTA 525
|||||||||| ||||||||||||||| | ||| ||||||| |||||||||||||||||||
Sbjct 301 TTGAAGGGGAAGCAGACAGTTACGACCTCGGTATAGGAGCTGGATTCTACCTCAATGCTA 360
Query 526 CTCAGGAAAAGTGGAAGAACTGGCGTATGTATGACTATGTTGTCAAAGAGTTGCCAAAAC 585
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCAGGAAAAGTGGAAAAACTGGCGTATGTATGACTATGTTGTCAAAGAGTTGCCAAAAC 420
Query 586 TCCTGAGTGAAAACTTTTCCCAGCTTGACACAACAAAAGCATCTATATCTGGACACTCCA 645
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCCTGAGTGAAAACTTTTCTCAGCTTGACACAACAAAAGCATCTATATCTGGACACTCCA 480
Query 646 TGGGTGGACATGGAGCTCTTACTATATACCTGAGGAACCTCGATAAATACAAGTCTGTAT 705
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 481 TGGGTGGACATGGAGCTCTTACTATATACCTGAAGAACCTCGATAAATACAAGTCTGTGT 540
Query 706 CTGCGTTTGCACCAATCACGAATCCCATAAATTGTGCATGGGGACAGAAGGCATTCACCA 765
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGCGTTTGCACCAATTGCCAATCCCATAAATTGTGCATGGGGACAGAAGGCATTCACCA 600
Query 766 ATTATCTAGGTGACAACAAAGCTGCTTGGGAGGAATACGATGCCACTTGTCTTATTTCAA 825
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 601 ATTATCTAGGTGACAACAAGGCTGCTTGGGAGGAATACGATGCCACTTGTCTTATTACAA 660
Query 826 AGTACAACAATCTTTCTGCAACAATTCTAATTGATCAGGGAGAAAACGACCAGTTCTACC 885
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGTTCAACAATCTGTCTGCAACAATTCTAATTGATCAGGGAGAAAACGACCAGTTCTACC 720
Query 886 CTGATCAGTTATTGCCCAGCAAGTTTGAGGAGGCGTGCAAGAAAGTGAATGCACCGCTCT 945
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGATCAGTTATTGCCCAGCAATTTTGAGGAGGCGTGCAAGAAAGTGAATGCACCGCTCT 780
Query 946 TATTGCGCCTCCATCCAGGATACGACCACTCCTACTATTTCATTGCCACCTTCATCGAAG 1005
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TACTGCGCCTCCAGCCAGGATACGACCACTCCTACTATTTCATTGCCACCTTCATCGAAG 840
Query 1006 ACCACATTAGTCACCATGCTCAAGCCCTTGAGCTATAGCTCACTTCATCTGCTTGGAA 1063
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 841 ACCACATTAGTCACCATGCTCAAGCCCTTAAGCTCTAGCTCACTTCATCTGCTTGGAA 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5