BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41550.1
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483235 jgi|Araly1|483235|fgenesh2_kg.4__2295__AT2G41550.1 2394 0.0
> Ahg483235 jgi|Araly1|483235|fgenesh2_kg.4__2295__AT2G41550.1
Length=1768
Score = 2394 bits (1296), Expect = 0.0
Identities = 1641/1800 (91%), Gaps = 54/1800 (3%)
Strand=Plus/Plus
Query 9 GTAGCAAACCCGTTCACCGTTTGAACCGACctctttctctctctctacactctactctAA 68
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAGCATCCCCGTTCACCGTTTAAACCGACCTCTTTCTCTCTCTCTACACTCTACTCTAA 60
Query 69 ATACTGCAGAGTGTTTTGTTCGTCGCTTTCACTGCCAGCCtttttttttCTCTCTCTCAC 128
||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 61 ATATTGCAGAGTGTGTTGTTCGTCGCTTTCACTGCCAGCC-TTTGTTTTCTCTCTCTCAC 119
Query 129 TAAATTCTCTCGCCGACCTTCTTCAAACCCTAGAAAAACGCTTAATTTCTGGAAGATCCA 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 TAAATTCTCTCGCCGACCTTCTTCAAACCCTAGAAAAACGCTTAATTTCTGGAAGATCGA 179
Query 189 TCGACGAAG------C-TC--A--C--AACGAATGAATTTTGAGGCTTATCGTAGTGAGT 235
||||||||| | || | | ||| |||||||| | || ||||||| ||||||
Sbjct 180 TCGACGAAGCTCTCTCTTCTTACCCGGTACGGATGAATTTAGCGGTTTATCGTTGTGAGT 239
Query 236 GACCACCATGGATGATGATGATGATCTCTGGGGTCCGCCACGAGTTTTTGTAGTTGTGCA 295
|||||||||||||||||| || |||||||||||||||||||||| |||| | |||
Sbjct 240 GACCACCATGGATGATGAAGAAGATCTCTGGGGTCCGCCACGAG---TTGT-G--CAGCA 293
Query 296 AGACGATACCTTTCGTAAACAGACCGTACGTCGTTGTGAATTTTGGTTCGATT-TCAGAA 354
||||||||| |||||||| || ||| | |||||||||||||||||||| |||| | ||||
Sbjct 294 AGACGATACTTTTCGTAAGCAAACCCTGCGTCGTTGTGAATTTTGGTTTGATTGT-AGAA 352
Query 355 CAGATGTGCTCGAAGAAAATTTCCAGAACGAAAAGTATTGTGAGCTAGTTTGGAGGATAT 414
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 353 CAGATGTGCTCGAAGAAAATTTCCAGAACGAAAAGTTTTGTGAGCTAGTGTGGAGGATAT 412
Query 415 TGA-C-AG-AGAAGAAGAGGCAAGTTACTGAAATTGCTGAGCTTGAGAGGGTTTCAGTTT 471
||| | || ||||||||| ||||||| ||| |||||||||||||||||||||||| ||||
Sbjct 413 TGACCGAGAAGAAGAAGAAGCAAGTTGCTGCAATTGCTGAGCTTGAGAGGGTTTCGGTTT 472
Query 472 CAGTATCGGCTCAA-AATGATACGGCTTCCTCTGGGAGTGGTGGTGACTTGCATGAGATA 530
| || | || ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 473 C----TCTTCAAAATAATGATACGGCTTCCTCTGAGAGTGGTGGTGACTTGCATGAGATA 528
Query 531 GACTCTTCTGATTCTGATAAGACTCTCAGTACTACTCTTCCAGATTCTGATACTAGTTCT 590
|||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||
Sbjct 529 GACTCTTCTGATTCTGATAAAACTCTCAGTGCTACTCTTCCAGATTCTGATTCAAGTTCT 588
Query 591 GCTAAACTGGCTCTTGATGACGACGAAAACACTTCTAGTATCAGCGATGCTCAGACTGCT 650
|||||| || ||||| ||||||| || |||||||||||||| | | | | || ||||
Sbjct 589 GCTAAATTGCCTCTTTATGACGATGATAACACTTCTAGTAT---C-A-G--C-GA-TGCT 639
Query 651 CAAACTGTTCAGATCAGAGATTCTAGTAACGACGACACTGAAGATATAGAGCCTGAAACA 710
|||||| |||||| |||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 640 CAAACTATTCAGACCAGAGATTCTTGTAACGACGACACTGAAGAAATTGAGCCTGAAACT 699
Query 711 AGATTGATGCCTCATGAGACAGCAGCTAATGATCCACTAACAGTTGAGGTTGCAGAAGAT 770
|||||||| |||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 700 AGATTGATTACTCACGACACAGCAGCAAATGATCCACTAACAGTTGAGGTTGCTGAAGAT 759
Query 771 GCAGATACCTCTTCTAGCCCTGTGTTGGAAAGCAAGATTGACGAAGCTGAAGAACATTCT 830
|| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 760 GCTGATACCTCTTCTAGCCCTGTGTTAGCAAGCAAGATTGACGAAGCTGAAGAACATTCT 819
Query 831 TGTTCATCCTTGGTTACTGACCAAGTCTTTGATCCTA-TAAAGCAAG-CCCTCGAGAACA 888
||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||
Sbjct 820 TGTTCATCCTTGGTTACTGACCAAGTCTTTGATCCTATTAAA-CAAGCCCCT-GAGAACA 877
Query 889 AATCTTCATCTGCTATAAGCCGTGAGAGTATTGGAGGTTCCACACTGAGACCATTGCATT 948
||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||
Sbjct 878 AATCTTCATCTGCTATAAGCCGTGAGAATATTGGAGGTTCCACCCTGAGGCCATTGCTTT 937
Query 949 TAGAGACCCGGGAGAAGGCAAATACTACAGACGAAGATGGAGATATATTGAAGGATCACC 1008
| ||||||| | |||||||||| ||||| |||||||||| || |||||||||||||| |
Sbjct 938 TGGAGACCC--G-GAAGGCAAATGCTACAAACGAAGATGGGGACATATTGAAGGATCATC 994
Query 1009 AGCAAAACGATAGCTTGCAAGACATTGTAACTGTTTCGGAACCTTTTACCACAGAGTCTC 1068
|||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 995 AGCAAAACGATAGCTTGCAAGATATTGTAACTGCTTCTGAACCTTTTACCACAGAGTCTC 1054
Query 1069 TCTTAGAAATGTGTGATGAACCGGACAAAGGCAGAGATATCCCATGTGGTGAGAGAAGCA 1128
||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 1055 TCTTAGAAATGTGTGATGAACCGGACAAAGGGAGAGAAATCTCATGTGGTGAGAGAAGCA 1114
Query 1129 AAAAATCACATCCTGAAGCTGTGGTGAAGACTGTAGTTAAAGACGAGCTGATCATAAGCT 1188
||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1115 AAAAACCACAACCTGAAGCTGTGGTGAAGACTGTTGTTAAAGACGAGCTGATCATAAGCT 1174
Query 1189 TGCTTACCGAGGCAAGAAAAAAGGCAGAGAGCAAGAATCCTGGGTCAGTCCTTATAAAGA 1248
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1175 TGCTTACCGAGGCAAGAAAAAAGGCAGAGAGCAAGAATCCTGGGTCAGTCCTAATAAAGA 1234
Query 1249 AGAGACAGAGACAGTCTAATAGCAGTGACAATAAAGGCGCGAACACAAGTTTTATCAGAA 1308
|||| |||||||| ||||| ||||| || | ||| |||| ||||||||||||||||||||
Sbjct 1235 AGAGGCAGAGACAATCTAACAGCAGCGATAGTAATGGCGTGAACACAAGTTTTATCAGAA 1294
Query 1309 ACATCAAGCAGAAAGTACAAGGTGGAGCTGGTGAGATTAATATTGATCCAGTTAAAAACT 1368
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1295 ACATCAAGCAGAAAGTACAAGGTGGGGCTGGTGAGATTAATATTGATCCAGTTAAAAACT 1354
Query 1369 CAACCCA-GTCGACACCAAAGATCATCAGGGGTTCGAGTGTTCCCACACAGCATGCAGAT 1427
| | ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1355 C-AGCCAGGTCGACACCTAAGATCATCAGGGGTTCAAGTGTTCCCACACAGCATGCAGAT 1413
Query 1428 TCGTTGTTGGATTCTTCCATGGACGGAAAAATCCAGAGAGGTGGAAAAAATGTAAGTGGC 1487
|| |||||||| ||| || |||||||||||||||||||||||| | |||| ||||| |
Sbjct 1414 TCATTGTTGGA---TTCGATAGACGGAAAAATCCAGAGAGGTGGACATAATGGAAGTGAC 1470
Query 1488 TCATTGATATCATTATCCATAAGTGAGTTGAAGAAGAAGACAGGCAAGGAATTAAGAAGC 1547
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 TCGGTGATATCATTATCAATAAGTGAGTTGAAGAAGAAGACAGGCAAGGAATTAAGAAGC 1530
Query 1548 ATAGCGAAGGATCTGAAAGT-ACAACATTACTATAAGCTCAAGAAAGAAGATCTGCTTCA 1606
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1531 ATAGCGAAGGATCTGAAAGTAAC-ACATTACTATAAGCTCAAGAAAGAAGATCTGCTTCA 1589
Query 1607 ACGGATAACCAATCAACTAAACCCCCAGTTAGCCGATTGTACAAAGCAGAGAATGGAGTC 1666
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1590 ACGGATAACCAATCAACTAAA-CCCCAGTTAGCCGATTGTACAAAGCAGAGAATGGAGTC 1648
Query 1667 ATAACCGATCTCAGTGGTATAGTTAACATTAGGCCTTACACAACAGTCCTTCTCTTTTGT 1726
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1649 ATAACCGATCTCAGTGGTATAGTTAACATTAGGCCTTACACAACAGTCCTTCTCATTTGT 1708
Query 1727 TTCTTTGTCTCTATGGTACAACCACTAGCTTGAGTAATCATACGGAGGTTGCTTGGCTTT 1786
|||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct 1709 TTCTTTCTCTCTATGGTACAACCATTAGCTTGAATAATCATGCGGAGGTTGCTTGGCTTT 1768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67038831200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5