BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41560.1
Length=3355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483236 jgi|Araly1|483236|fgenesh2_kg.4__2296__AT2G41560.1 5236 0.0
Ahg486176 jgi|Araly1|486176|fgenesh2_kg.5__2168__AT3G57330.1 3142 0.0
Ahg899595 jgi|Araly1|899595|Al_scaffold_0004_245 283 5e-75
> Ahg483236 jgi|Araly1|483236|fgenesh2_kg.4__2296__AT2G41560.1
Length=3201
Score = 5236 bits (2835), Expect = 0.0
Identities = 3086/3208 (96%), Gaps = 14/3208 (0%)
Strand=Plus/Plus
Query 15 ctctctctctcAGCTGCCTTCGCGCCGGCGAAG-TT-TGTCTCTGTGAAAACAGAGAGTG 72
||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||
Sbjct 1 CTCTCTCTCTCAGCTGCCTTCGCGCCGGCGAAGTTTATCTCTCTTTGAAAACAGAGAGTG 60
Query 73 -GTAGTGAGAGCGTGAGAAATGTCGAACTTGCTAAGGGATTTCGAGGTGGAGGCTAAGAA 131
| ||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 61 AG-AGTGAGA--GTGAGAAATGTCGAATTTGCTAAGGGACTTCGAGGTCGAGGCTAAGAA 117
Query 132 TCCGTCGCTGGAAGCGCGTCAAAGATGGAGGTCGTCCGTGTCTATCGTGAAGAACCGTAC 191
|||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 118 TCCGTCGCTGGAAGCGCGTCAACGATGGAGGTCGTCCGTCTCTATAGTGAAGAACCGTAC 177
Query 192 TCGTCGTTTCCGTAACATTCGGGATCTCGATAAGCTCGCTGACTACGAGAACAAGAAGCA 251
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 TCGTCGTTTCCGTAACATTCGGGATCTCGATAAGCTCGCTGACTACGAGACCAAGAAGCA 237
Query 252 CCAGATCCAGGAAAAGATCCGAGTTGCTTTCTTTGTTCAAAAGGCAGCTCTTCATTTCAT 311
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 238 CCAGATCCAGGAAAAGATCCGAGTTGCTTTCTATGTTCAAAAGGCAGCTCTTCAATTCAT 297
Query 312 TGATGCTGCTGCTAGGCCGGAATACAAGCTCACTGATGAGGTTAAGAAAGCCGGATTTTC 371
|||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 298 TGATGCTGCTGCTAGGCCGGAATACAAGCTCAGTGATGAGGTTAAGCAAGCTGGATTTTC 357
Query 372 TATTGAAGCAGATGAACTTGCATCTATGGTTCGCAAAAATGACACTAAGAGCCTGGCACA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TATTGAAGCAGATGAACTTGCATCTATGGTTCGCAAAAATGACACTAAGAGCCTGGCACA 417
Query 432 GAAAGGTGGAGTTGAAGAACTTGCTAA-AAAAGTATCTGTATCTCTCTCTGAAGGCA-TT 489
|||||||||||||||||| ||||||| |||| ||||||||||||| |||||| | ||
Sbjct 418 CAAAGGTGGAGTTGAAGAAATTGCTAAGAAAA-TATCTGTATCTCTAGATGAAGG-AGTT 475
Query 490 CGTTCGAGTGAAGTGCCCATTAGGGAAAAGATATTTGGAGAAAATCGTTATACTGAGAAA 549
||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 476 CGTTCGAGTGAAGTGCCCACCAGGGCAAAGATATTTGGAGAAAATCGTTACACTGAGAAA 535
Query 550 CCAGCCAGATCATTCTTAATGTTTGTGTGGGAAGCGCTCCACGACATAACCCTTATCATT 609
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCAGCCAGATCATTTTTAATGTTTGTGTGGGAAGCGCTCCACGACATAACCCTTATCATC 595
Query 610 CTTATGGTCTGCGCTGTAGTATCAATAGGTGTGGGTGTTGCTACAGAAGGATTTCCAAGG 669
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 596 CTTATGGTCTGCGCTGTAGTATCAATAGGTGTGGGTGTTGCCACAGAAGGATTTCCAAAG 655
Query 670 GGAATGTATGATGGGACAGGGATCTTGCTAAGTATACTCTTGGTGGTCATGGTTACTGCG 729
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 656 GGAATGTATGATGGAACAGGGATCTTGCTAAGTATACTCTTGGTAGTCATGGTTACTGCG 715
Query 730 ATCAGTGATTACAAGCAATCTTTGCAGTTCAGAGACTTGGATCGAGAGAAGAAGAAGATT 789
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATCAGTGACTACAAGCAATCTTTGCAGTTCAGAGACTTGGATCGAGAGAAGAAGAAGATT 775
Query 790 ATTGTCCAGGTCACCAGAGATGGGAGCAGACAAGAAATCTCCATTCATGACTTGGTCGTT 849
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 776 ATTGTCCAGGTCACCAGAGATGGGAACAGACAAGAAATCTCCATTCATGACTTGGTCGTT 835
Query 850 GGAGATGTAGTTCATCTATCTATTGGGGATCAAGTTCCAGCTGATGGGATTTTTATATCT 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGAGATGTAGTTCATCTATCTATTGGGGATCAAGTTCCAGCTGATGGGATTTTTATATCT 895
Query 910 GGATACAACTTGGAGATAGACGAGTCAAGCTTATCGGGTGAGAGTGAACCGTCACATGTG 969
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 896 GGATACAACTTGGAGATAGATGAGTCAAGCTTATCGGGCGAGAGTGAACCGTCACATGTG 955
Query 970 AATAAAGAGAAGCCTTTTCTGCTTTCAGGAACCAAAGTACAAAACGGTTCTGCAAAAATG 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AATAAAGAGAAGCCTTTTCTGCTTTCAGGAACCAAAGTACAAAACGGTTCTGCAAAAATG 1015
Query 1030 CTGGTGACAACAGTTGGTATGAGGACTGAGTGGGGAAAGTTGATGGAAACGCTGGTTGAT 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTGGTGACAACAGTTGGTATGAGGACTGAGTGGGGAAAGTTGATGGAAACGCTGGTTGAT 1075
Query 1090 GGTGGAGAAGATGAGACGCCTCTGCAGGTGAAGCTAAATGGGGTTGCAACAATCATTGGT 1149
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1076 GGTGGAGAAGATGAGACTCCTCTGCAGGTGAAGCTAAATGGGGTTGCAACAATAATTGGT 1135
Query 1150 AAGATTGGTTTAAGCTTTGCTGTGCTTACATTTGTGGTATTGTGCATAAGGTTTGTCTTG 1209
||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AAGATTGGTTTAACCTTCGCCGTGCTTACATTTGTGGTATTGTGCATAAGGTTTGTCTTG 1195
Query 1210 GACAAAGCAACGTCTGGTAGCTTCACCAACTGGTCATCTGAAGATGCATTGACGCTACTT 1269
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1196 GAGAAAGCAACGTCTGGTAGCTTCACCAACTGGTCATCTGAAGATGCACTGACGCTACTT 1255
Query 1270 GACTACTTTGCAATTTCTGTAACTATCATTGTCGTTGCCGTGCCCGAAGGTTTGCCACTG 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GACTACTTTGCAATTTCTGTAACTATCATTGTCGTTGCCGTGCCCGAAGGTTTGCCACTG 1315
Query 1330 GCAGTGACCTTAAGTTTGGCATTTGCTATGAAGAAGCTGATGAGTGACAGGGCACTTGTG 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GCAGTGACCTTAAGTTTGGCATTTGCTATGAAGAAGCTGATGAGTGACAGGGCACTTGTG 1375
Query 1390 AGGCATCTTGCTGCATGTGAGACTATGGGTTCTTCTACTTGCATCTGCACTGATAAGACA 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AGGCATCTTGCTGCATGTGAGACTATGGGTTCTTCTACTTGCATCTGCACTGATAAGACA 1435
Query 1450 GGGACCTTAACTACTAATCACATGGTGGTCAACAAAGTATGGATCTGTGATAAGGTTCAA 1509
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GGGACCTTGACTACTAATCACATGGTGGTCAACAAAGTATGGATCTGTGATAAGGTTCAA 1495
Query 1510 GAGAGGCAAGAGGGAAGTAAAGAAAGCTTTGAGTTGGAACTATCGGAAGAAGTTCAGAGC 1569
||||||||||||||||||| ||| |||||| ||||||||||| | ||||||||||||||
Sbjct 1496 GAGAGGCAAGAGGGAAGTACAGAGAGCTTTCAGTTGGAACTACCAGAAGAAGTTCAGAGT 1555
Query 1570 ACTCTTTTGCAGGGTATATTTCAGAACACTGGTTCGGAAGTTGTTAAGGATAAAGATGGA 1629
| |||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1556 ATTCTTTTGCAGGGCATATTTCAGAACACTGGTTCTGAAGTTGTTAGGGATAAAGATGGA 1615
Query 1630 AACACTCAGATCCTAGGATCCCCGACAGAAAGAGCAATACTCGAATTCGGTTTACTTTTA 1689
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1616 AACACTCAGATCCTAGGATCCCCGACAGAAAGAGCAATACTCGAATTCGGTTTGGTTTTA 1675
Query 1690 GGTGGTGATTTTAACACGCAGCGTAAAGAGCATAAGATACTCAAGATTGAGCCGTTCAAT 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 GGTGGTGATTTTAACACGCAGCGTAAAGAGCATAAGATACTCAAGATTGAGCCGTTCAAT 1735
Query 1750 TCAGACAAGAAGAAAATGTCTGTTCTTATAGCTCTTCCTGGAGGTGGTGCACGGGCTTTC 1809
|||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||
Sbjct 1736 TCAGACAAGAAGAAAATGTCTGTTCTCATAACTCTCCCTGGAGGTGGCGCACGGGCTTTC 1795
Query 1810 TGCAAAGGGGCATCTGAAATAGTGTTGAAAATGTGTGAGAATGTTGTGGATTCAAACGGA 1869
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1796 TGCAAAGGGGCATCTGAAATAGTGTTGAAAATGTGCGAGAATGTTGTGGATTCAAATGGA 1855
Query 1870 GAATCGGTTCCGCTAACTGAAGAACGGATTACGAGTATCTCTGATATCATAGAGGGTTTT 1929
||||| ||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 1856 GAATCTGTTCCACTAACTGAAGAACGAATTACAAGTATCTCTGATGTCATAGAGGGTTTT 1915
Query 1930 GCCTCAGAGGCTCTGAGGACTCTCTGCTTGGTTTACAAAGATCTAGATGAAGCTCCCAGT 1989
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1916 GCCTCAGAGGCTTTGAGGACTCTCTGCTTGGTTTACAAAGATCTGGATGAAGCTCCCAGT 1975
Query 1990 GGAGAGCTCCCTGATGGAGGCTATACAATGGTAGCAGTTGTTGGAATCAAGGATCCAGTA 2049
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1976 GGAGATCTCCCTGATGGAGGCTATACAATGATAGCAGTTGTTGGAATCAAGGATCCAGTA 2035
Query 2050 CGTCCGGGTGTTAGGGAAGCCGTTCAGACTTGTCAAGCTGCCGGAATCACCGTCCGTATG 2109
|| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 2036 CGGCCGGGTGTTAGGGAAGCTGTCCAGACTTGTCAAGCTGCTGGAATCACCGTCCGTATG 2095
Query 2110 GTCACTGGAGATAACATAAGCACAGCCAAAGCAATTGCTAAGGAATGTGGCATATATACC 2169
|||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 2096 GTCACTGGAGATAACATAAGCACAGCAAAAGCAATTGCAAAGGAATGTGGTATATATACT 2155
Query 2170 GAAGGAGGCTTAGCTATAGAAGGTTCAGAATTCCGGGACTTGTCTCCTCACGAAATGAGG 2229
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2156 GAAGGAGGTTTAGCTATCGAAGGTTCAGAATTCCGGGACTTATCTCCTCACGAAATGAGG 2215
Query 2230 GCCATTATCCCCAAAATTCAGGTAATGGCTCGGTCTCTGCCATTGGACAAACATACTTTA 2289
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2216 GCCATTATCCCCAAAATTCAGGTAATGGCTCGGTCTCTGCCCTTGGATAAACATACTTTA 2275
Query 2290 GTCAGCAACTTGAGGAAAATTGGAGAGGTAGTTGCAGTGACAGGGGATGGGACAAACGAT 2349
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2276 GTCAGCAACTTGAGGAAAATTGGAGAGGTAGTTGCAGTGACTGGGGATGGGACAAATGAT 2335
Query 2350 GCCCCTGCGTTGCATGAGGCAGACATTGGACTAGCAATGGGAATAGCTGGAACAGAGGTT 2409
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2336 GCCCCTGCCTTGCATGAGGCAGACATTGGACTTGCAATGGGAATAGCTGGGACAGAGGTT 2395
Query 2410 GCGAAAGAGAATGCTGATGTGATCATAATGGACGATAACTTCAAAACAATAGTAAATGTG 2469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 GCGAAAGAGAATGCTGATGTGATCATAATGGACGATAACTTCAAAACAATAGTAAATGTG 2455
Query 2470 GCTAGATGGGGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACT 2529
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2456 GCTAGATGGGGACGTGCTGTGTATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACT 2515
Query 2530 GTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGGATCTGCTCCA 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2516 GTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGGATCTGCTCCA 2575
Query 2590 CTCACTGCTGTGCAACTGCTTTGGGTCAACATGATCATGGACACACTTGGTGCATTGGCT 2649
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 CTCACTGCTGTGCAACTTCTTTGGGTCAACATGATCATGGACACACTTGGTGCATTGGCT 2635
Query 2650 CTAGCAACAGAACCTCCCAATGAAGGTTTAATGAAACGTGCACCAATAGCTAGAACCGCC 2709
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 2636 CTAGCAACAGAACCTCCCAATGAAGGTTTAATGAAACGTGCACCAATCGTTAGAACCGCC 2695
Query 2710 AGCTTTATCACCAAAACCATGTGGAGAAACATCGCTGGTCAAAGCGTTTACCAGTTGATT 2769
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2696 AGCTTCATCACCAAAACCATGTGGAGAAACATCGCCGGTCAAAGCGTTTACCAGTTGATT 2755
Query 2770 GTCTTAGGAATTCTCAATTTCGCAGGCAAATCACTTCTCAAACTAGATGGCCCTGACTCC 2829
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2756 GTCTTGGGAATTCTCAATTTTGCAGGCAAATCACTTCTCAAACTCGATGGCCCTGACTCC 2815
Query 2830 ACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAGGTGTTCAATGAG 2889
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2816 ACAGCTGTTCTTAACACGGTCATCTTCAACTCCTTCGTCTTTTGCCAGGTATTCAATGAG 2875
Query 2890 ATCAATAGCCGGGAAATAGAGAAGATAAATGTGTTCAAAGGAATGTTCAATAGCTGGGTG 2949
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2876 ATCAATAGCCGTGAAATAGAGAAGATAAATGTGTTCACAGGAATGTTCAATAGCTGGGTC 2935
Query 2950 TTCACTTGGGTAATGACTGTGACGGTAGTGTTTCAAGTGATCATAGTGGAGTTTCTTGGA 3009
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2936 TTCACATGGGTAATGACTGTGACCGTAGTGTTTCAAGTGATCATAGTGGAGTTTCTTGGA 2995
Query 3010 GCATTTGCTAGCACCGTTCCTCTGAGCTGGCAACATTGGTTACTATCAATCTTGATAGGA 3069
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2996 GCATTTGCTAGCACCGTTCCTTTGAGCTGGCAACATTGGTTACTATCAATCTTGATAGGA 3055
Query 3070 TCATTGAACATGATTGTAGCCGTTATCCTCAAATGCGTACCTGTCGAGTCT-CGTCACCA 3128
||||||| |||||||||||||||||||||||||||| |||| ||||||||| | ||||||
Sbjct 3056 TCATTGAGCATGATTGTAGCCGTTATCCTCAAATGCATACCCGTCGAGTCTTC-TCACCA 3114
Query 3129 TCACGATGGCTACGACCTGCTTCCTTCTGGTCCTTCTTCTTCCAACTCTGCCTGATACCG 3188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3115 TCACGATGGCTACGACCTGCTTCCTTCTGGTCCTTCTTCTTCCAACTCTGCCTGATACCG 3174
Query 3189 TTTCTATGTTCA-CtttttttttGTTTT 3215
|| ||||||||| |||||||||| ||||
Sbjct 3175 TTACTATGTTCATCTTTTTTTTT-TTTT 3201
> Ahg486176 jgi|Araly1|486176|fgenesh2_kg.5__2168__AT3G57330.1
Length=3263
Score = 3142 bits (1701), Expect = 0.0
Identities = 2644/3096 (85%), Gaps = 78/3096 (3%)
Strand=Plus/Plus
Query 104 TAAGGGATTTCGAGGTGGAGGCTAAGAATCCGTCGCTGGAAGCGCGTCAAAGATGGAGGT 163
||| |||||||||||| || ||||||||||||||||| ||||| |||||| ||||| |||
Sbjct 15 TAA-GGATTTCGAGGTCGAAGCTAAGAATCCGTCGCTCGAAGCTCGTCAACGATGGCGGT 73
Query 164 CGTCCGTGTC-TA-TCGTGAAGAACCGTACTCGTCGTTTCCGTAACATTC-GGGATCTCG 220
| ||| ||| | |||| || || || ||||||| ||||||| | || | ||||||
Sbjct 74 CCTCC--GTCGGACTCGTCAAAAATCGGGCTCGTCGATTCCGTATGA-TCAGCAATCTCG 130
Query 221 ATAAGCTCGCTGACTACGAGAACAAGAAGCA--CCAGATCCAGGAAAAGATCCGAGTTGC 278
| || |||||||| | || || ||| || | | |||||||||||||||| || |||||
Sbjct 131 AGAAACTCGCTGAGAATGACAAGAAG-AG-ATGCGAGATCCAGGAAAAGATACGGGTTGC 188
Query 279 TTTCTTTGTTCAAAAGGCAGCTCTTCATTTCATTGATGCT-GCTGCTAGGCCG-GAATAC 336
||||| ||||||||||||||||||||| |||||||||||| || || | || |||||
Sbjct 189 TTTCTATGTTCAAAAGGCAGCTCTTCAGTTCATTGATGCTGGC-GC-CCGTCGTGAATAT 246
Query 337 AAGCTCACTGATGAGGTTAAGA-AAGCCGGATTTTCTATTGAAGCAGATGAACTTGCATC 395
|| |||||||||||||| || | |||| ||||||| | | ||||||||||| ||||| ||
Sbjct 247 AAACTCACTGATGAGGTCAA-ACAAGCAGGATTTTATGTCGAAGCAGATGAGCTTGCTTC 305
Query 396 TATGGTTCGCAAAAATGACACTAAGAGCC-TGGCACAGAAAGGTGGAGTTGAA-GAACTT 453
|||||||||||| ||||||| ||||||| | || ||| || ||| |||| ||| ||
Sbjct 306 TATGGTTCGCAATCATGACACAAAGAGCCTTACCA-AGAGCGGAGGACCTGAAGGAA-TT 363
Query 454 GCTAAAAAAGTATCTGTATCTCTCTCTGAAGGCATTCGTTCGAGTGAAGTGCCCATTAGG 513
||| | ||||| |||||||||||| ||||||| | |||||||||||| | | ||| ||
Sbjct 364 GCTCAGAAAGTGTCTGTATCTCTCGCTGAAGGTGTCCGTTCGAGTGAACTACACATCAGA 423
Query 514 GA-AAAGATATTTGGAGAAAATCGTTATACTGAGAAACCAGCCAGATCATTCTTAATGTT 572
|| ||| || | ||||||||| |||||| |||||||||| |||||||| || |||| |||
Sbjct 424 GAGAAA-ATCTATGGAGAAAACCGTTATCCTGAGAAACCTGCCAGATCGTTTTTAACGTT 482
Query 573 TGTGTGGGAAGCGCTCCACGACATAACCCTTATCATTCTTATGGTCTGCGCTGTAGTATC 632
||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 483 TGTTTGGGAAGCGCTTCAAGACATAACCCTTATCATCCTTATGGTCTGCGCTGTAGTATC 542
Query 633 AATAGGTGTGGGTGTTGCTACAGAAGGATTTCCAAGGGGAATGTATGATGGGACAGGGAT 692
||||| ||||| ||||| |||||||||||||||| ||| |||||||||||||| |||||
Sbjct 543 GATAGGAGTGGGAGTTGCCACAGAAGGATTTCCAAAGGGCATGTATGATGGGACGGGGAT 602
Query 693 CTTGCTAAGTATACTCTTGGTGGTCATGGTTACTGCGATCAGTGATTACAAGCAATCTTT 752
|||||| |||||| |||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 603 CTTGCTTAGTATAATCTTGGTGGTTATGGTTACTGCTATCAGTGACTACAAGCAATCTTT 662
Query 753 GCAGTTCAGAGACTTGGATCGAGAGAAGAAGAAGATTATTGTCCAGGTCACCAGAGATGG 812
|||||||||||| |||||||||||||| |||||||||||| | || |||||||| |||||
Sbjct 663 GCAGTTCAGAGATTTGGATCGAGAGAAAAAGAAGATTATTATTCAAGTCACCAGGGATGG 722
Query 813 GAGCAGACAAGAAATCTCCATTCATGACTTGGTCGTTGGAGATGTAGTTCATCTATCTAT 872
|||||||||||| |||||||| ||||||||||| ||||||||||| |||||| |||||||
Sbjct 723 GAGCAGACAAGAGATCTCCATCCATGACTTGGTTGTTGGAGATGTGGTTCATTTATCTAT 782
Query 873 TGGGGATCAAGTTCCAGCTGATGGGATTTTTATATCTGGATACAACT-TGGAGATAGACG 931
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 783 TGGGGATCAAGTTCCAGCTGATGGGATTTTTATATCCGGATACAA-TCTGGAGATAGACG 841
Query 932 AGTCAAGCTTATCGGGTGAGAGTGAACCGTCACATGTGAATAAAGAGAAGCCTTTTCTGC 991
| |||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||
Sbjct 842 AATCAAGCTTATCGGGCGAGAGTGAACCATCACATGTGAATAAAGAGAACCCGTTTCTGC 901
Query 992 TTTCAGGAACCAAAGTACAAAACGGTTCTGCAAAAATGCTGGTGACAACAGTTGGTATGA 1051
|||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 902 TTTCAGGAACCAAAGTCCAAAACGGCTCTGCAAAAATGCTGGTTACAACCGTTGGTATGA 961
Query 1052 GGACTGAGTGGGGAAAGTTGATGGAAACGCTGGT-TGATGGTGGAGAAGATGAGACGCCT 1110
||||||||||||||||||||||||| || || || ||| |||||||| |||||||| |||
Sbjct 962 GGACTGAGTGGGGAAAGTTGATGGATACTCT-GTGTGAGGGTGGAGAGGATGAGACCCCT 1020
Query 1111 CTGCAGGTGAAGCTAAATGGGGTTGCAACAATCATTGGTAAGATTGGTTTAAG-CTTTGC 1169
||||||||||| ||||| || |||||||||||||| |||||||||||||| || |||||
Sbjct 1021 CTGCAGGTGAAACTAAACGGTGTTGCAACAATCATAGGTAAGATTGGTTT-AGTATTTGC 1079
Query 1170 TGTG-CTTACATTTGTGGTATTGTGCATAAGGTTTGTCT-TGGACAAAGCAACGTCTGGT 1227
||| | ||| ||| |||| |||||||||||||| || | |||| ||||| ||| |||||
Sbjct 1080 AGTGAC-TACGTTTTTGGTGTTGTGCATAAGGTTCGT-TGTGGAGAAAGCCACGGCTGGT 1137
Query 1228 AGCTTCACCAACTGGTCATCTGAAGATGCATTGACGCTACTTGACTACTTTGCAATTTCT 1287
||| |||| | ||||| |||||||||||| | || | |||||||||||||||||| ||
Sbjct 1138 AGCATCACTGAGTGGTCTTCTGAAGATGCACTAACATTTCTTGACTACTTTGCAATTGCT 1197
Query 1288 GTAACTATCATTGTCGTTGCCGTGCCCGAAGGTTTGCCACTGGCAGTGACCTTAAGTTTG 1347
|| || || || || ||||| || || ||||| || || |||| |||||||| ||| |
Sbjct 1198 GTTACCATTATAGTTGTTGCTGTACCTGAAGGATTACCTTTGGCTGTGACCTTGAGTCTA 1257
Query 1348 GCATTTGCTATGAAGAAGCTGATGAGTGACAGGGCACTTGTGAGGCATCTT-GCTGCATG 1406
|||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||||
Sbjct 1258 GCATTTGCTATGAAGAAGTTAATGAGTGACAGGGCACTTGTGAGGCAT-TTGGCTGCATG 1316
Query 1407 TGAGACTATGGGTTCTTCTACTTGCATCTGCACTGATAAGACAGGGACCTTAACTACTAA 1466
|||||| |||||||||||||| ||||||||||| ||||| |||||||||||||| |||||
Sbjct 1317 TGAGACGATGGGTTCTTCTACCTGCATCTGCACGGATAAAACAGGGACCTTAACCACTAA 1376
Query 1467 TCACATGGTGGTCAACAAAGTATGGATCTGTGATAAGGTTCAAGAGAGGCAAGAGGGAAG 1526
|||||||| ||||||||||| ||||| ||||| || | | | ||| ||||| |||
Sbjct 1377 CCACATGGTAGTCAACAAAGTTTGGATATGTGA-AA--AT-ATCA-AGG--AGAGGCAAG 1429
Query 1527 TAAAGAAAGCTTTGAGTTGGAA-CTATCGGAAGAAGTTCAGAGCACT-CTTTTGCAGGGT 1584
|||||| ||| |||| ||| ||||| ||| |||| ||| | | ||| | ||||
Sbjct 1430 --AAGAAAACTTCCAGTT-GAACCTATCTGAACTAGTTAAGAATA-TCCTTATACAGGCC 1485
Query 1585 ATATTTCAGAACACTGGTTCGGAAGTTGTTAAGGATAAAGATGGAAACACTCAGATCCTA 1644
|||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||||
Sbjct 1486 ATATTTCAGAACACTGGTTCTGAAGTCGTTAAGGATAAGGAAGGAAAAACTCAGATCCTG 1545
Query 1645 GGATCCCCGACAGAAAGAGCAATACTCGAATTCGGTTTACTTTTAGGTGGTGATTTTAAC 1704
|| || || |||||||| || ||||| ||||| ||||| |||||||||||||| || ||
Sbjct 1546 GGTTCACCTACAGAAAGGGCTATACTGGAATTTGGTTTGCTTTTAGGTGGTGACGTTGAC 1605
Query 1705 ACGCAGCGTAAAGAGCATAAGATACTCAAGATTGAGCCGTTCAATTCAGACAAGAAGAAA 1764
|| || || ||| ||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1606 ACACAACGCCGAGAACATAAGATACTCAAGATAGAGCCATTCAACTCAGACAAGAAGAAA 1665
Query 1765 ATGTCTGTTCTTATAGCTC-TTCCTGGAGGTGGTGCACGGGCTTTCTGCAAAGGGGCATC 1823
||||||||||||| | ||| || |||| ||| | ||| |||||||||||||| |||||
Sbjct 1666 ATGTCTGTTCTTACATCTCATT-CTGGTGGTAAAGTACGTGCTTTCTGCAAAGGTGCATC 1724
Query 1824 TGAAATAGTGTTGAAAATGTGTGAGAATGTTGTGGATTCAAACGGAGAATCGGTTCCGCT 1883
||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |
Sbjct 1725 TGAAATAGTCTTGAAAATGTGCGAGAAGGTTGTGGATTCAAACGGAGAATCTGTTCCTTT 1784
Query 1884 AACTGAAGAACGGATTACGAGTATCTCTGATATCATAGAGGGTTTTGCCTCAGAGGCTCT 1943
| |||||||| |||| | |||||||||||| |||||||||| ||||| |||||||||||
Sbjct 1785 ATCTGAAGAAAAGATTGCAAGTATCTCTGATGTCATAGAGGGATTTGCTTCAGAGGCTCT 1844
Query 1944 GAGGACTCTCTGCTTGGTTTACAAAGATCTAGATGAAGCTCCCAGT-GGAGAGCTCCCTG 2002
||| ||||||||||| ||||||| ||||| ||||||||||||| | ||| | || ||||
Sbjct 1845 GAGAACTCTCTGCTTAGTTTACACGGATCTTGATGAAGCTCCCAATGGGA-ATCTTCCTG 1903
Query 2003 ATGGAGGCTATACAATGGTAGCAGTTGTTGGAATCAAGGATCCAGTACGTCCGGGTGTTA 2062
|||| ||||| ||| |||| |||||||||||||||||||| || || || || |||||||
Sbjct 1904 ATGGTGGCTACACATTGGTTGCAGTTGTTGGAATCAAGGACCCGGTTCGCCCTGGTGTTA 1963
Query 2063 GGGAAGCCGTTCAGACTTGTCAAGCTGCCGGAATCACCGTCCGTATGGTCACTGGAGATA 2122
|||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct 1964 GGGAAGCCGTTCAGACTTGTCAAGCTGCTGGAATCACTGTTCGTATGGTCACTGGTGATA 2023
Query 2123 ACATAAGCACAGCCAAAGCAATTGCTAAGGAATGTGGCATA-TATACCGAAGGAGGCT-T 2180
|||||||||| |||||||| ||||| ||||||||||| ||| | ||| | |||||| | |
Sbjct 2024 ACATAAGCACTGCCAAAGCGATTGCAAAGGAATGTGGTATACT-TACAGCAGGAGG-TGT 2081
Query 2181 AGCTATAGAAGGTTCAGAATTCCGGGACTTGTCTCCTCACGAAATGAGGGCCATTATCCC 2240
|||||||||||||||||| ||||| | ||| |||| || ||||||||||||||| | ||
Sbjct 2082 AGCTATAGAAGGTTCAGAGTTCCGCAATTTGCCTCCACATGAAATGAGGGCCATTTTACC 2141
Query 2241 CAAAATTCAGGTAATGGCTCGGTCTCTGCCATTGGACAAACATACTTTAGTCAGCAACTT 2300
|||||||||||| |||||||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 2142 CAAAATTCAGGTGATGGCTCGGTCTTTGCCATTGGACAAACATACATTAGTCAACAACTT 2201
Query 2301 GAGGAAAATTGGAGAGGTAGTTGCAGTGACAGGGGATGGGACAAACGATGCCCCTGCGTT 2360
||||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||| ||
Sbjct 2202 GAGGAAAATGGGAGAGGTAGTTGCAGTGACCGGGGATGGAACAAATGATGCTCCTGCATT 2261
Query 2361 GCATGAGGCAGACATTGGACTAGCAATGGGAATAGCTGGAACAGAGGTTGCGAAAGAGAA 2420
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2262 GCATGAGGCTGACATTGGACTTGCCATGGGAATAGCTGGAACAGAGGTTGCGAAAGAGAA 2321
Query 2421 TGCTGATGTGATCATAATGGACGATAACTTCAAAACAATAGTAAATGTGGCTAGATGGGG 2480
||||||||| ||||||||||| || ||||| ||||||||| |||||||| ||||||||
Sbjct 2322 TGCTGATGTAATCATAATGGATGACAACTTTGCAACAATAGTGAATGTGGCGAGATGGGG 2381
Query 2481 ACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGT 2540
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2382 ACGTGCTGTGTATATTAACATCCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTTGT 2441
Query 2541 TGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGGATCTGCTCCACTCACTGCTGT 2600
|||| ||||||||||||||||||||||||||||||| ||| |||| ||||||||||| ||
Sbjct 2442 TGCTTTGATCATCAACTTTGTCTCTGCTTGCATCACCGGAGCTGCGCCACTCACTGCAGT 2501
Query 2601 GCAACTGCTTTGGGTCAACATGATCATGGACACACTTGGTGCATTGGCTCTAGCAACAGA 2660
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2502 GCAACTACTTTGGGTGAACATGATCATGGACACACTCGGTGCATTGGCTCTAGCAACCGA 2561
Query 2661 ACCTCCCAATGAAGGTTTAATGAAACGTGCA-CCAATAGCTAGAACCGCCAGCTTTATCA 2719
||||||||| |||||||||||||||||| || ||||| ||||||||||| ||||| ||||
Sbjct 2562 ACCTCCCAACGAAGGTTTAATGAAACGT-CAACCAATCGCTAGAACCGCAAGCTTCATCA 2620
Query 2720 CCAAAACCATGTGGAGAAACATCGCTGGTCAAAGCGTTTACCAGTTGATTGTC-TTAGGA 2778
||| | | ||||||||||||||| |||||||||| |||| ||||| || ||| || ||
Sbjct 2621 CCAGAGCTATGTGGAGAAACATCATTGGTCAAAGCATTTATCAGTTAATCGTCCTT-GGC 2679
Query 2779 ATTCTCAA-TTTCGCAGGCAAATCACTT-CTCAAACT-AGATGGCCCTGACTCCACAGCC 2835
|| ||||| ||| || |||||| || | ||||| || | | ||||| || || |||||
Sbjct 2680 ATCCTCAACTTT-GCTGGCAAA-CAAATACTCAACCTCA-ACGGCCCAGATTCAACAGCT 2736
Query 2836 GTTCTTAACAC-AGTCATCTTCAACTCCTTCGTCTTTTGCCAGGTGTTCAATGA-GATCA 2893
||||| || || | ||||||||||||||||||||||||| |||||||| ||||| | | |
Sbjct 2737 GTTCTCAATACCA-TCATCTTCAACTCCTTCGTCTTTTGTCAGGTGTTTAATGAAG-TAA 2794
Query 2894 ATAGCCGGGAAATAGAGAAGATAAATGTGTTCAAAGGAATGTTCAATAGCTGGGTGTTCA 2953
| ||||| || |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 2795 ACAGCCGAGAGATAGAGAAGATAAACGTGTTCAAAGGAATGTTCAAGAGTTGGGTGTTTG 2854
Query 2954 CTTGGGTAATGACTGTGACGGTAGTGTTTC-AAGTGATCATAGTGGAGTTTCTTGGAGCA 3012
|| |||||||||| || || | | ||| |||||||||| || ||||| |||||||||
Sbjct 2855 TTTCTGTAATGACTGCAACAGTTG-GATTCCAAGTGATCATTGTTGAGTTCCTTGGAGCA 2913
Query 3013 TTTGCTAGCACCGTTCCTCTGAGCTGGCAACATTGGTTACTAT-CAATCTTGATAGGATC 3071
||||| ||||| |||||| ||||||||||||||||| | || | || | ||||| || ||
Sbjct 2914 TTTGCAAGCACTGTTCCTTTGAGCTGGCAACATTGGCTGCTCTGCATT-TTGATTGGTTC 2972
Query 3072 ATTGAA-CATGATTGTAGCCGTTA-TCCTCAAATGCGTACCTGTCGAGTCTCGTCACCAT 3129
| || ||||||| |||||||| || | |||||| |||| || |||||| | |||
Sbjct 2973 CGT-AAGCATGATTCTAGCCGTTGGTCTT-AAATGCATACCGGTTGAGTCTAACCGTCAT 3030
Query 3130 CACGATGGCTACGACCTGCTTCCTTCTGGTCCTTCT 3165
||||||||||| || ||||||||||||||||| |||
Sbjct 3031 CACGATGGCTATGAGCTGCTTCCTTCTGGTCCATCT 3066
> Ahg899595 jgi|Araly1|899595|Al_scaffold_0004_245
Length=3048
Score = 283 bits (153), Expect = 5e-75
Identities = 345/437 (79%), Gaps = 15/437 (3%)
Strand=Plus/Plus
Query 2239 CCCAAAATTCAGGTAATGGCTCGGTC-TCTGCCAT-TGGACAAACATACTTTAGT-CAGC 2295
||||| |||||||| |||||||| || || ||| | ||||||| ||||| | || |||
Sbjct 2167 CCCAAGATTCAGGTGATGGCTCGTTCTTC-GCC-TATGGACAAGCATACACTGGTGAAGC 2224
Query 2296 AACTTGAGGA--AAATTGGA-GAGGTAGTTGCAGTGACAGGGGATGGGACAAACGATGCC 2352
| || |||| | || || || || ||||| ||||| || || ||||||||||||||
Sbjct 2225 -AGTTAAGGACCACTTTTGATGAAGTTGTTGCCGTGACTGGTGACGGGACAAACGATGCA 2283
Query 2353 CCTGCGTTGCATGAGGCAGACATTGGACTAGCAATGGGAATAGCTGGAACAGAGGTTGCG 2412
|| || | || ||||| ||||| ||| |||||||||| || || |||||||| || |||
Sbjct 2284 CCAGCACTCCACGAGGCTGACATAGGATTAGCAATGGGCATTGCCGGAACAGAAGTAGCG 2343
Query 2413 AAAGAGAATGCTGATGTGATCATAATGGACGATAACTTCAAAACAATAGT-AAATGTGGC 2471
||||||| || ||||| ||||| | |||||||| |||| ||||| || | | || ||
Sbjct 2344 AAAGAGAGCGCGGATGTCATCATTCTCGACGATAATTTCAGCACAATCGTCACA-GTAGC 2402
Query 2472 TAGATGGGGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGT 2531
| |||||||||| |||| || || ||||| ||||| ||||| ||||| |||||||| ||
Sbjct 2403 GAAATGGGGACGTTCTGTTTACATTAACATACAGAAATTTGTGCAGTTTCAGCTAACAGT 2462
Query 2532 TAATGTGGTTGCTCTGATCATCAACTTTGTC-TCTGCTTGCATCACAGGATCTGCTCCAC 2590
||||| ||||| || || | ||| || || || |||||| | || ||| |||||| |
Sbjct 2463 CAATGTTGTTGCCCTCATTGTTAAC-TTCTCTTCAGCTTGCTTGACTGGAAGTGCTCCCC 2521
Query 2591 TCACTGCTGTGCAACTGCTTTGGGTCAACATGATCATGGACACACTTGGTGCA-TTGGCT 2649
| |||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||
Sbjct 2522 TAACTGCTGTGCAACTGCTTTGGGTCAACATGATAATGGACACACTTGGAGCTCTTG-CT 2580
Query 2650 CTAGCAACAGAACCTCC 2666
||||| |||||||||||
Sbjct 2581 CTAGCTACAGAACCTCC 2597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126655602944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5