BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41600.5
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483239 jgi|Araly1|483239|fgenesh2_kg.4__2299__AT2G41600.3 852 0.0
> Ahg483239 jgi|Araly1|483239|fgenesh2_kg.4__2299__AT2G41600.3
Length=811
Score = 852 bits (461), Expect = 0.0
Identities = 574/628 (91%), Gaps = 10/628 (2%)
Strand=Plus/Plus
Query 34 GAGATGAGGAAGTTGAATCCGCTTCTGAAACGAGGCTTGAAGGCTATTGAAAATGGTGAT 93
|||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 3 GAGATGAGGAAGCTGAATCCGCTTCTGAAACGAGGCTTGAAAGCTGTTGAAAATGGTGAT 62
Query 94 TTGTTGAAGATCCTCCAAAGTGAAATTCGTCACGAAATCTCCCATCCTCGTTTCCAGGGC 153
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 63 TTGGTGAAGATCCTCCAAACTGAAATTCGTCACGAAATCTCCCATCCTCGTTTCCTGGGC 122
Query 154 GTTGAGACCGGTTCTCTAGGAGATTTCAAATTGGATTGGGATTCACCGGAAAGCCAAGAT 213
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 123 GTTGAGACCGGTTCTCTAGGAGATTTCAAATTGGATTGGGATTCTCCGGAAAGCCAAGAT 182
Query 214 ATTGTTCTGAAGAGACAGTTTGATTCAGGCGAGAAGGTTGTGGTCTCTGCTTTATTGCAA 273
|||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||
Sbjct 183 ATTGTTCTGAAGAGACAGTTTGTTTCAGGCGAGGAGGTTGTGGTCTCGGCTTTATTGCAA 242
Query 274 CCAGAACCTATAGAACTAGAAGATGATTTAGTGTTTCCTAGGGAAGCTCATGCCAAAGTT 333
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 243 CCAGAACCTATAGAACTAGATGATGATTTAGTGTTTCCTAGGGAAGCTCTTGCCAAAGTT 302
Query 334 TGTATCAAAAAGCCTGGTCTCAGCTCTATCTTGCAGTTTCATTGCCGGGTTTACGAATCA 393
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 303 TGTATCAAAAAGCCTGGACTCAGCTCTATCTTGCAGTTTCATTGCCGGGTTTACGAAACA 362
Query 394 GGATCTGGATCTTCTCATTTCGACATCGAGA--GCGCCTACTTTATCCGCTCTTTTGTTT 451
||||||||||||||| |||||||||| |||| |||| ||||||||||||||| ||||
Sbjct 363 GGATCTGGATCTTCTGATTTCGACATTGAGAAAGCGCG--CTTTATCCGCTCTTTGGTTT 420
Query 452 CTGCTCCTTCTTCCACTTATGGAGACCATTTTTTCAG-CCAAGTAGATCCCAAACTACA- 509
||||| ||||||| |||||| |||| ||||| |||| |||| ||||| |||||||
Sbjct 421 CTGCTTCTTCTTCGACTTATAGAGATAATTTTCTCAGGCCAA-TAGATTTCAAACTAGGG 479
Query 510 CAGTGCACTG-GAGCAATACCTAATATCTAAGGGGGTCAGTGAAGGCTTAACTAATTTCC 568
|| || ||| | ||| || |||||||| ||||| ||||||||||| |||| ||||||
Sbjct 480 CA-TGAACTACG-GCATTATCTAATATCCAAGGGAATCAGTGAAGGCCTAACCAATTTCA 537
Query 569 TTTTGTGTCACCTGAACAAGAAGGAGCAGGATCAATACGTTAACTGGTTACGCAGGCTTG 628
| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 538 TCGTGTGTCACCTGAACAAGAAGGAGCAGGATCAGTACGTTAACTGGTTACGCAAGCTTG 597
Query 629 AATCAACTATGTCACATTCTCCAAAGCC 656
||||||| ||||| ||||||||||||||
Sbjct 598 AATCAACAATGTCGCATTCTCCAAAGCC 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29888366928
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5