BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41620.1
Length=3859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483241 jgi|Araly1|483241|fgenesh2_kg.4__2301__AT2G41620.1 4503 0.0
Ahg938710 jgi|Araly1|938710|scaffold_502901.1 1402 0.0
Ahg345960 jgi|Araly1|345960|fgenesh1_pg.C_scaffold_4002302 398 2e-109
> Ahg483241 jgi|Araly1|483241|fgenesh2_kg.4__2301__AT2G41620.1
Length=3770
Score = 4503 bits (2438), Expect = 0.0
Identities = 2598/2674 (97%), Gaps = 16/2674 (1%)
Strand=Plus/Plus
Query 10 AAAAAGGTTTGAATCCCGACG-GAAACCCTCTCTTTGCTGCTTCCCCGACTGCGTAGTAG 68
||||||||||||||||| || ||||||||||||||||| |||| ||| || | |
Sbjct 1 AAAAAGGTTTGAATCCC-CCGAGAAACCCTCTCTTTGCTTCTTCTCCG---GC----T-G 51
Query 69 TAGCTCGAATCCAAAATCAATGGCGAACGACCAAGAGATGAGTGGTTGGACTGATCTTCT 128
| || | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 -A-CT-G---CGAAAATCAATGGCGAACGACCAAGAGATGAGTGGTTGGACTGATCTTCT 105
Query 129 CCATTCTTCGTCGAAGCTTCTGGAGCAAGCTGCTCCTTCTTCTCAGTTTCCTCCTCTTCA 188
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 106 CCATTCTTCGTCGAAGCTTCTTGAGCAAGCTGCTCCTTCTTCTCAGTTTCCTCCTCTTCA 165
Query 189 GAGAAATTTAGATCAGTTGGAAGCGTTATCGAAGAAGCTCAAGGCTAAAACCCTGAGGAA 248
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 166 GAGAAATTTAGATCAATTGGAAGCGTTATCGAAGAAGCTCAAGGCTAAAACCCTAAGGAA 225
Query 249 CGAAGCTCCTTCTCAGTCTATTGCTGCCACTAGACTACTCGCACGGGAGGGAATCAATGC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 CGAAGCTCCTTCTCAGTCTATTGCTGCCACTAGACTACTCGCACGGGAGGGAATCAATGC 285
Query 309 AGAGCAACTAGCTCGTGATCTTAAATCTTTCGAGCTCAAGACAACATTTGAGGATGTGTT 368
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 286 AGAGCAACTAGCTCGTGATCTTAAATCTTTTGAGCTCAAGACAACATTTGAGGATGTGTT 345
Query 369 CCCTGCTGAGGCGACGAGCGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CCCTGCTGAGGCGACGAGCGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGT 405
Query 429 ATCAGCTATTCAGGAAGCCCAAAAGGATAATGTTCGAAGCTTTAATGACTACATGATGAA 488
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 ATCAGCTATACAGGAAGCCCAAAAGGATAATGTTCGAAGCTTTAATGACTACATGATGAA 465
Query 489 AGTGTTGGAGGAGGATTGGAGAAAAGAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAAT 548
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AGTGCTGGAGGAGGATTGGAGAAAAGAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAAT 525
Query 549 ATCAATGCTACCTAAAACAAATATGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACT 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 ATCAATGCTACCTAAAACAAATATGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACT 585
Query 609 AGTGCCGGTGGGTTCGAGTCCTCGAGTATCCTCAACTCCAGGCAAAGAACTCGTGGCTCT 668
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 586 AGTGCCGGTGGCCTCGAGTCCTCGAGTATCCTCAACACCAGGCAAAGAACTCGTGGCTCT 645
Query 669 GGCTAACATACCCATTCATGAGAAAAAAGCATATGTCTATGGGGAGGTTGTGAAGAAACT 728
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 646 GGCTAACATACCCATTCATGAGAAAAAAGCATATGTCTATGGAGAGGTTGTGAAGAAACT 705
Query 729 TAACACTTCAAGAGAACGAGGCATGCCATTTAGACCTGCTATGTGTTTTAAGGACGCTTA 788
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 706 TAACTCTTCAAGAGAACGAGGCTTGCCATTTAGACCTGCTATGTGTTTTAAGGAAGCTTA 765
Query 789 TGATACTCTTGGTGCTGAGGTAACTCGTGGAAAATCAGTCAACATGCAGAAAATATGGCA 848
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 766 TGATACTCTTGGTGCTGAGGTTACTCGTGGAAAATCAGTCAACATGCAGAAAATATGGCA 825
Query 849 GCTTGTTCAGGCAATAACAGGTGAAGATTCAGCAGTTCGACAGGGTGTTTCGAAGAGGAT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GCTTGTTCAGGCAATAACAGGTGAAGATTCAGCAGTTCGACAGGGTGTTTCGAAGAGGAT 885
Query 909 GGCCCTCGCGATAGGTGCAAGACATCATTTACAACATGGGCATGAGAAATTTATAATGGA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GGCCCTCGCGATAGGTGCAAGACATCATTTACAACATGGGCATGAGAAATTTATAATGGA 945
Query 969 CACAATTCAAACTCACCCTACACAGGCTGCTCTTGGTGGATCTGTTGGAAATTTGCAAAG 1028
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 946 CACAATTCAAAGTCACCCTACCCAGGCTGCTCTTGGTGGATCTGTTGGAAATTTGCAAAG 1005
Query 1029 AATTCGTGCTTTCCTTCGGATTCGTTTGAGAGACTATGGAGTTTTAGATTTTGATTCAAC 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AATTCGTGCTTTCCTTCGGATTCGTTTGAGAGACTATGGAGTTTTAGATTTTGATTCAAC 1065
Query 1089 TGATGCTCGTAGGCAGCCTCCTGTTGATACTACTTGGCAACAGATATATTTTTGCTTGCG 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TGATGCTCGTAGGCAGCCTCCTGTTGATACTACTTGGCAACAGATATATTTTTGCTTGCG 1125
Query 1149 AACTGGGTATTATGAGGAGGCTAGGGAAATTGCTCGGTCAACACGGTCATCTCAGCAATT 1208
|||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 1126 AACTGGGTATTATGAGGAGGCTAGGGAAATCGCTCGGGCAACGCGGTCATCTCAGCAATT 1185
Query 1209 TGCACCACTGCTTACAGAGTGGATTACCACAGATGGTATGGTGGCTGCAGAGTCTGCAGC 1268
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TGCACCACTGCTTACCGAGTGGATTACCACAGATGGTATGGTGGCTGCAGAGTCTGCAGC 1245
Query 1269 TATTGCATCAGAAGAATGTGAGAAAATGCTAAGGATGGGCGATCGGTTGGGTCGAACAGC 1328
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1246 TATTGCATCAGAAGAATGTGAGAAAATGCTAAGGATGGGTGATCGGTTGGGTCGAACCGC 1305
Query 1329 TTATGACAAGAAAAAACTCCTACTCTACACTATCATTTCTGGTTCCCGTAGGCAAATTGA 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1306 TTATGACAAGAAAAAACTCCTACTCTACACTATCATTTCTGGTTCCCGTAGGCAAGTTGA 1365
Query 1389 GCGCATACTGAGGGATCTATCTACACTCTTTAACACAATTGAAGATTTCTTATGGTTCAA 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GCGCATACTGAGGGATCTATCTACACTCTTTAACACAATTGAAGATTTCTTATGGTTCAA 1425
Query 1449 ATTGTCATGCATAAGAGACGTCACTGGTGGATCCTCATCTGTGGTCCTGAATGATGGCCT 1508
||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 1426 ATTGTCATGCATAAGAGACGTCACTGGTGTATCTTCATCTCTGGTCCTGAATGATGGCCT 1485
Query 1509 TGCGCCATACAGTTTGGATGATCTTCAGGCTTATCTCAATAAATTTGAGCCTTCATACTA 1568
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1486 TGCGCCTTACAGTTTGGATGATCTTCAGGCTTATCTCAATAAATTCGAGCCTTCATACTA 1545
Query 1569 CACAAAGAATGGAAAAGACCCCTTGGTATATCCATATGTTTTGCTTCTCAGTGTTCAGTT 1628
||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1546 CACGAAGAATGGAAAAGACCCCTTAGTATATCCATATGTTTTGCTTCTCAGCATTCAGTT 1605
Query 1629 GCTACCGGCCATCATGCACTTATCCAAAGAAGCAGGAGACGGAGGGTATAATATTGATGC 1688
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1606 GCTACCGGCTATCATGCACTTATCTAAAGAAGCAGGAGACGGAGGGTATAATATTGATGC 1665
Query 1689 TGTTCATATAGCTATTTCTTTGGTGGATCATTCCGTTTTATCTGAAGGCTCTGGGACTGG 1748
| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1666 TATTCACATAGCTATTTCTTTGGTGGACCATTCCGTTTTATCTGAAGGCTCTGGGACTGG 1725
Query 1749 CCACAAACTAAGTGTGATGGATTCTAATGCTGAGGCATCTAGCATGATTAGGCAATATGG 1808
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1726 CCACAAACTAAGTGTGATGGATTCTAACGCTGAGGCATCTAGCATGATTAGGCAATATGG 1785
Query 1809 GTCAATGTTTTTGCATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTGC 1868
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786 GTCAATGTTCCTGCATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTGC 1845
Query 1869 TGCTACTGTAGGTGGGGGACAATTAGCTTGGTCTGGAAGAAGTAATGTGGATCAACAAAG 1928
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1846 TGCTGCTGTAGGTGGGGGACAATTAGCTTGGTCTGGAAGAAGTAATGTGGATCAACAGAG 1905
Query 1929 GCAGAGAAACCTAATGCTGAAGCAGCTACTGACTGAGATTCTGCTTCGAGAAAGAGGTAT 1988
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1906 GCAGAGAAACTTAATGCTGAAGCAGCTACTAACTGAGATTCTGCTTCGAGAAAGAGGTAT 1965
Query 1989 TTACTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTCCC 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 TTACTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTCCC 2025
Query 2049 TGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCTGG 2108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 TGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCTGG 2085
Query 2109 ATTATATGACAAATCCATAGAGTTACAGAAGAGGGTGGGTGCATTTTCCGCTGCCTTGGA 2168
|||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 2086 ATTATATGACAAATCCATAGAGATACAGAAGAGGGTGGGTGCATTTGCGGCTGCCTTGGA 2145
Query 2169 GACTATAAACAAGTGTCTATCCGAAGCCATCTGTTCTCTTGCCCGTGGAAGGTTGGATGG 2228
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2146 GACTATAAACAAGTGTCTATCTGAAGCCATCTGTTCTCTTGCCCGTGGAAGGTTGGATGG 2205
Query 2229 TGAAAGTAGAACATCAGGGCTTATTCTCGCAGGGAACGATATTCTTGAGACTTACAAATA 2288
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 TGAAAGCAGAACATCAGGGCTTATTCTCGCAGGGAACGATATTCTTGAGACTTACAAATA 2265
Query 2289 TTACCCTGAAGTTAGTCTCCAGGAAAGAGAGCGAGTGATGGAACAAGAAACCATACTAAG 2348
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2266 TTACCCTGAAGTCAGTCTCCAGGAAAGAGAGCGAGTGATGGAACAAGAAACCATACTAAG 2325
Query 2349 AGAGCTTGAGGCAATACTATCGATCCACAAGTTGGGTAGATTAGGCAATCATCTGGATGC 2408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2326 AGAGCTTGAGGCAATACTATCGATCCACAAGTTGGGTAGATTAGGCAATCATCTGGATGC 2385
Query 2409 TTTGAGAGAAATTGCAAAACTTCCATTTCTTCATCTTGATCCAAGAATGCCCGATGCAAC 2468
||| || |||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2386 TTTAAGGGAAATTGCAAAACTTCCATTCCTTCATCTTGATCCAAGAGTGCCCGATGCAAC 2445
Query 2469 CGCTGATGTGTTCCAGAGCGCATCTCCTTACTTCCAGACTTGTGTCCCGGACCTGCTCAA 2528
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2446 CGCTGATGTGTTCCAGAGCGCATCTCCTTACTTCCAGGCTTGTGTCCCGGACCTGCTCAA 2505
Query 2529 AGTTGCTCTAACGTGTCTGGACAATGTACCTGACACTGATGGGTCGATCCGTGCCATGAG 2588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2506 AGTTGCTCTAACGTGTCTGGACAATGTACCTGACACTGATGGGTCGATCCGTGCCATGAG 2565
Query 2589 ATCCAAGATTGCTGGGTTTCTTGCAAGCAACACGCACCGGAACTGGCCTCGTGACTTGTA 2648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2566 ATCCAAGATTGCTGGGTTTCTTGCAAGCAACACGCACCGGAACTGGCCTCGTGACTTGTA 2625
Query 2649 CGAGAAGGTGGCTCGAAGCTTTTGAGTATTTTTG 2682
||||||||||||||||||||||||| ||||||||
Sbjct 2626 CGAGAAGGTGGCTCGAAGCTTTTGAATATTTTTG 2659
Score = 1118 bits (605), Expect = 0.0
Identities = 924/1072 (86%), Gaps = 45/1072 (4%)
Strand=Plus/Plus
Query 2813 ATCTAGGTGCCATATGTAATATTGC--AGATATTGTTTCTATAGAATTTGATG-TTTTGT 2869
||||||||| | |||||||||||| ||| ||||||| ||||||||||| || ||||||
Sbjct 2716 ATCTAGGTGAAACATGTAATATTGCAGAGAGATTGTTTTTATAGAATTTGTTGTTTTTGT 2775
Query 2870 GTGAGTTATATGATGTAGTGGATTCTGATAAGAAATTGTTATTAATTTTGGTATATCTAA 2929
||||| | |||||| ||||||||| ||||||||||||||| || ||||| |||||||||
Sbjct 2776 GTGAG-T-TATGATATAGTGGATTTTGATAAGAAATTGTTGTTTATTTTCTTATATCTAA 2833
Query 2930 GATGATATAACT-TCAACTAAAATTAACTA-GTTTTGTCATTTTTATTGAAAGTTTTTAA 2987
|| |||||| | |||| | ||||||| || ||||||||||||||||||||||| | |
Sbjct 2834 AATTATATAA-TATCAATTCAAATTAATTATTTTTTGTCATTTTTATTGAAAGTTACTGA 2892
Query 2988 TGCAAAATCGAATTTAAACAGATCCGAAGCAATTTTCATTGA-CGAAGATATGG--TGAA 3044
|||| ||||||||||||| ||||| |||| || | || | | |||| ||||
Sbjct 2893 TGCAGAATCGAATTTAAAGAGATCTGAAG-AA-AATGATAAATTTTTG-CATGGCATGAA 2949
Query 3045 ACAGAGCTT-T-AAAAGTAGGATGGAGAAAA-GGGCATGAGAAAAGAGATGAAGAAGAGA 3101
| |||| || | | | | ||| |||| | ||| | ||||||||||||| |
Sbjct 2950 A-AGAGTTTCTCTCATG-AAGAT-CTCAAAATTGATATGGGGCGTGAGATGAAGAAGA-A 3005
Query 3102 GAGATGTTCAATT-CCTGCGA-A-ATTTC--CAGAAGAAGAAAACCAAACACAAAAACCC 3156
| || | |||| | | | | | || |||||||||| ||||| ||||||||||||
Sbjct 3006 TTG-TG-T-AATTACAT-AAACACAGATCAACAGAAGAAGAGAACCATACACAAAAACCC 3061
Query 3157 TAAACAAGATAGGCTCTTCAACAGGAGACATAACGGCCAAGTACACACAATCTCTTATAA 3216
|||||||||| ||||||| | ||||||||||||| ||||||||||||||||||| |||||
Sbjct 3062 TAAACAAGATGGGCTCTTTAGCAGGAGACATAACCGCCAAGTACACACAATCTCGTATAA 3121
Query 3217 GAACAAGCAATGTCAGTCCTTGCACAACATTTTTAACCACCAAAACTCTTTTATT-TATT 3275
|||||||||||| || ||||| ||| ||||||||| |||||||||||| || || | ||
Sbjct 3122 GAACAAGCAATGCCAATCCTTCCACTGCATTTTTAATCACCAAAACTCTCTTCTTCT-TT 3180
Query 3276 CCTTCTTCTTTGCATAACTTGCATATAATCCTCAAAAACAAAACACCAACCACCAAGAAC 3335
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 3181 CCTTCTTCTTTGCATAACTTGCTTATAATCCTCAAAATCAAAACACCAACCACCAAGAAC 3240
Query 3336 GTTGTACTAGACCATCCTCGGTAAGAGACAATCTTCCCTCCCACTATTAATGGCTCTTTC 3395
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 3241 GTTGTACTAGACCATCCTCGGTACGTGACAATCTTCCCTCCCACTATTAATGGCTCTTTC 3300
Query 3396 CTGCATATACAAGACTTGCAGACTCCAGAGAAAGTAGATGTGACCAGAGCATCGAATCCT 3455
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 3301 CTGCATATACAAGACTTGCAGACTCCAGAGAAAGTTGACGTGACCAGAGCATCAAATCCT 3360
Query 3456 GTATAATAGGGGAGAATCACAGCGTCTAAGTAAAGACTAGCGTGGAGAATACCAGAGATA 3515
||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 3361 GTATAGTAGGGGAGAATCACAGCGTCTAAGTAAAGACTAGCGTGGAGGATTCCCGAGATA 3420
Query 3516 GTAGAGGCTTCGAAGAAGACAAAACTCGCTTCTTTTTCGATATTGTTCTCAAATAAAAGC 3575
||||||||||||||||||||||| |||||||||||||| ||||||||||| || | ||||
Sbjct 3421 GTAGAGGCTTCGAAGAAGACAAAGCTCGCTTCTTTTTCAATATTGTTCTCGAACATAAGC 3480
Query 3576 ACTGAGAGCTGAACAAGCTGTAGTATCGCAGGTCCAAAGATGGAAATTGGGAAAAGGGTA 3635
|| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 3481 ACCGAGAGTTGAACAAGCTGTACTATAGCAGGTCCAAAGATGGAAATTGGGAAAAGGGTG 3540
Query 3636 TTGATCCTTTGACCTTTTGCAAGAATCAAGATGATCAAAGGAAGAGAGATTGGACCAGAA 3695
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3541 TTGATCCTTTGACCTTTTGCAAGGATCAAGATGATCAAAGGAAGAGAGATTGGACCAGAA 3600
Query 3696 GGAAGTAAGTACCTTCTT-GCTTTGtcatcatcaccatcatcatcatT----T-T-CTCT 3748
|||||||||||||| ||| ||||| ||||||||| ||||||||||||| | | ||||
Sbjct 3601 GGAAGTAAGTACCT-CTTTGCTTTATCATCATCATCATCATCATCATTAGCATCTTCTCT 3659
Query 3749 TCTTCTTCTTGATAT--T-ACCTTCCTTACGACAACAATTAGCGTCGTCAAATAA-GTAA 3804
||||||||||||||| | |||||||||| ||||||||||||||||||||| ||| | ||
Sbjct 3660 TCTTCTTCTTGATATAATTACCTTCCTTAAGACAACAATTAGCGTCGTCAAGTAAAG-AA 3718
Query 3805 CCGTAACGAAGAAGAAAACTAGAACGTCGGTGATTTGAGGGTAGTCGCCGGC 3856
|||| | |||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 3719 CCGTGATGAAGAAGAAAACCAGAACATCAGTGATTTGAGGGTAGTCGCCGGC 3770
> Ahg938710 jgi|Araly1|938710|scaffold_502901.1
Length=2649
Score = 1402 bits (759), Expect = 0.0
Identities = 1292/1546 (84%), Gaps = 49/1546 (3%)
Strand=Plus/Plus
Query 1163 AGGAGGCTAGGGAAATTGCTCGGTCAACACGGTCATCTCAGC-A-A-TTTGCACCACTGC 1219
|||| ||||| |||||||| | |||| | ||||||||||| | | | ||||| || ||||
Sbjct 1098 AGGAAGCTAGAGAAATTGCCCAGTCATCTCGGTCATCTCAACAACAGTTTGCTCCTCTGC 1157
Query 1220 TTACAGAGTGGATTACCACAGATGGTA-TGGTGGCTGCAGAGT-CTGCAGCTATTGCATC 1277
||||||||||||||||||||| ||||| | ||||||||| | | | || |||||||| ||
Sbjct 1158 TTACAGAGTGGATTACCACAGGTGGTACT-GTGGCTGCACA-TACCGCTGCTATTGCTTC 1215
Query 1278 AGAAGAATGTGAGAAAATGCTAAGGATGGGCGATCGGTTGGGTCGAACAGCTTATGACAA 1337
|| |||||||||||| || |||||||||| |||||||| || | |||| | ||||||||
Sbjct 1216 TGAGGAATGTGAGAAATTGTTAAGGATGGGTGATCGGTTTGGCCAAACAACATATGACAA 1275
Query 1338 GAAAAAACTCCTACTCTACACTATCATTTCTGGTTCCCGTAGGCAAATTGAGCGCATAC- 1396
||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 1276 GAAGAAGCTCCTACTCTACACTATCATATCTGGTTCCCGAAGGCAAATTGATCGCAT-CT 1334
Query 1397 TGAGGGATCTATCTACACTCTTTAACACAATTGAAGA-TTTCTTATGGTTCAAATTGTCA 1455
|||||||| | ||||| |||||||||||||| ||||| |||| | ||||||||| | |||
Sbjct 1335 TGAGGGATTTTTCTACGCTCTTTAACACAATAGAAGATTTTC-TCTGGTTCAAACTATCA 1393
Query 1456 TGCATAAGAGACGTCA-CTGGTGGATCCTCATCTGTGGTCCTGAATGATGGCCTTGCGCC 1514
|| || | ||||| | |||||||||| ||||||||| || |||||||||| || | |||
Sbjct 1394 TGTGTACGTGACGT-AGCTGGTGGATCTTCATCTGTGATCTTGAATGATGGGCTAGTGCC 1452
Query 1515 ATACAGTTTGGATGATCTTCAGGCTTATCTCAATAAATTTGAGCCTTCATACTACACAAA 1574
|||||||||||||||||||||| |||||| |||||||||||||| || |||||||| ||
Sbjct 1453 TTACAGTTTGGATGATCTTCAGGTTTATCTTAATAAATTTGAGCCATCTTACTACACTAA 1512
Query 1575 GAATGGAAAAGACCCCT-TGGTATATCCATATGTTTTGCTTCTCAGTGTTCAGTTGCTAC 1633
|||||| ||||| |||| ||||||| ||||||||||||||||| || | ||||| ||||
Sbjct 1513 GAATGGCAAAGA-CCCTCTGGTATACCCATATGTTTTGCTTCTTAGCATCCAGTTACTAC 1571
Query 1634 CGGCCATCATGCACTTATCCAAAGAAGCAGGAGACGGAGGGTATAATATTGATGCTGTTC 1693
|||| ||||||||| | ||||| ||||| ||||| | ||||||||| ||||||||||| |
Sbjct 1572 CGGCGATCATGCACATGTCCAACGAAGCTGGAGATGAAGGGTATAACATTGATGCTGTCC 1631
Query 1694 ATATAGCTATTTCTTTGGTGGATCATTCCGTTTTATCTGAAGGCTCTGGGACTGGCCACA 1753
|| |||||||||| | ||||| |||||| || |||||||||| ||||||||||| ||||
Sbjct 1632 ATGTAGCTATTTCGCTAGTGGACCATTCCATTCTATCTGAAGGATCTGGGACTGGGCACA 1691
Query 1754 AACTAAGTGTGATGGATTCTAATGCTGAGGCATCTAGCATGATTAGGCAATATGGGTCAA 1813
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1692 AACTAAGTGTGATGGATGCTAATGCCGAGGCATCTAGCATGATTAGGCAATATGGGTCAA 1751
Query 1814 TGTTTTTGCATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTGCTGCTA 1873
||| ||||||||| || ||||| ||||||||| | || || ||||||||||||||| |
Sbjct 1752 TGTATTTGCATCATGGTGATCTGCAAATGACGCTGGAATACTATGCACAAGCTGCTATTG 1811
Query 1874 CTGTAGGTGGGGGACAATTAGCTTGGTCTGGAAGAAGTAATGTGGATCAACAAAGGCAGA 1933
| ||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |
Sbjct 1812 CAGTAGGTGGGGGGCAACAAGCTTGGTCTGGAAGAAGTAATGTTGATCAACAAAGGCAAA 1871
Query 1934 GAAACCTAATGCTGAAGCAGCTACTGACTGAGATTCTGCTT-CGAGA-AAGAGGTATTTA 1991
| ||| | ||||| ||||| ||||||||||||||| || || | ||| || ||| ||||
Sbjct 1872 GGAACTTGATGCTAAAGCAACTACTGACTGAGATTTTG-TTACAAGAGAA-TGGTGTTTA 1929
Query 1992 CTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTCCCTGA 2051
|||| | ||||| || |||||||| |||||||||||| |||||||||||||| | |||||
Sbjct 1930 CTTTCTACTTGGTGCTAGAGGTTCCGGTGAAGAAGGTGAGCTTGGAAGATTTCTGCCTGA 1989
Query 2052 TTCT-AGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCTGGAT 2110
| | | |||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1990 -TATAAAATTGAGGCAGCAGTTCTTGATCGAAGCTGCACATCAATGTCAAGAAGCTGGAT 2048
Query 2111 TATATGACAAATCCATAGAGTTACAGAAGAGGGTGGGTGCATTTTCCG-CTGCCTTGGAG 2169
|||||||| |||| ||||| |||| ||||| || ||||| | ||| | ||||||||||
Sbjct 2049 TATATGACCAATCGATAGAACTACAAAAGAGAGTTGGTGCGTATTC-GTCTGCCTTGGAA 2107
Query 2170 ACTATAAACAAGTGTCTATCCGAAGCCATCTGTTCTCTTGCCCGTGGAAGGTTGGATGGT 2229
|| |||||||| |||||||| |||||||| || || || | |||||||||| ||||||
Sbjct 2108 ACGATAAACAAATGTCTATCTGAAGCCATTTGCTCCCTCGTCCGTGGAAGGCCAGATGGT 2167
Query 2230 GAAAGT-AGAACATCAGGG-CTTATTCTCGCAGGGAACGATATTCTTGA-GACTTACAAA 2286
|||| | |||| |||| ||| ||||| |||| ||||||||||| | | | ||||||
Sbjct 2168 GAAACCCA-AACAG-AGGGGCTTGTTCTCTCAGGCAACGATATTCTCAATG-CATACAAA 2224
Query 2287 TATTACCCTGA-----A-------GT-TAGT-C--T--CCAGGAAAGAGAGCGAGTGATG 2328
||| ||||||| | || || | | | ||||||||||| || || |||
Sbjct 2225 TATCACCCTGATTGTCACATTCTTGTATATTACAGTGGCCAGGAAAGAGCTCGGGTTATG 2284
Query 2329 GAACAAGAAACCATACTAAGAGAGCTTGAGGCAATACTATCGATCCACAAGTTGGGTAGA 2388
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2285 GAACAAGAAACAATACTAAGAGAGCTTGAGGCAATACTATCGATCCACAAGTTAGCCAGA 2344
Query 2389 TTAGGCAATCATCTGGATGCTTTGAGAGAAATTGCAAAACTTCCATTTCTTCATCTTGAT 2448
|| ||| ||||| ||||| | |||||| | || |||||||| || |||||||| |||
Sbjct 2345 CTAAACAAACATCTAGATGCCATAAGAGAAGTCGCGAAACTTCCGTTCCTTCATCTCGAT 2404
Query 2449 CCAAGAATGCCCGATGCAACCGCTGATGTGTTCCAGAGCGCATC-TCCTTACTTCCAGAC 2507
|||||| | ||||| | ||| | |||| ||||||||| ||||| || |||||| |||||
Sbjct 2405 CCAAGACTACCCGACACCACCTCAGATGAGTTCCAGAGAGCATCCTC-TTACTTTCAGAC 2463
Query 2508 TTGTGTCCCGGACCTGCTCAAAGTTGCTCTAACGTGTCTGGACAATGTACCTGACACTGA 2567
||||||||| || | || || ||| |||| || ||| |||| || ||| ||||||||||
Sbjct 2464 TTGTGTCCCTGATTTACTTAAGGTTACTCTGACCTGTTTGGATAACGTAGCTGACACTGA 2523
Query 2568 TGGGTCGATCCGTGCCATGAGATCCAAGATTGCTGGGTTTCTTGCAAGCAACACGCACCG 2627
||| |||||| | | ||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 2524 TGGATCGATCAGGGGCATGAGATCTAAGATTGCTGGGTTTCTTGCAAGCAACACACAGCG 2583
Query 2628 GAACTGGCCTCGTGACTTGTACGAGAAGGTGGCTCGAAGCTTTTGA 2673
|||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 2584 GAACTGGCCTCGAGATTTGTACGAGAAGGTTGCTCGAAGCTTTTGA 2629
Score = 981 bits (531), Expect = 0.0
Identities = 812/947 (86%), Gaps = 22/947 (2%)
Strand=Plus/Plus
Query 193 AATTTAGATCAGTTGGAAGCGTTATCGAAGAAGCTCAAGGCTAAAACCCTGAGGAACGAA 252
||||| ||||| |||||||| || |||| ||| ||||||||||||||||| || ||||||
Sbjct 167 AATTTGGATCAATTGGAAGCATTGTCGAGGAAACTCAAGGCTAAAACCCTAAGAAACGAA 226
Query 253 GCTCCTTCTCAGTCTATTGCTGCCACTAGACTACTCGCACGGGAGGGAATCAATGCAGAG 312
|||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 227 GCTCCTTCACAGTCTATTGCTGCCACAAGACTCCTTGCACGGGAGGGAATCAATGCAGAT 286
Query 313 CAACTAGCTCGTGATCTTAAATC-TTTCGAGCTCAAGACAACATTTGAGGATGTGTTCCC 371
||| |||||||||||||||| || ||| ||| | ||||| |||||||||||||| |||||
Sbjct 287 CAATTAGCTCGTGATCTTAAGTCATTT-GAGTTGAAGACCACATTTGAGGATGTATTCCC 345
Query 372 TGCTGAGGCGACGAGCGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGTATC 431
||| ||| | || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TGCCGAGACAACAAATGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGTATC 405
Query 432 AGCTATTCAGGAAGCCCAAAAGGATAATGTTCGAAGCTTTAATGACTACATGATGAAAGT 491
||||| ||||| || ||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 406 GGCTATACAGGAGGCTCAAAAAGATAATGTTCGAAGCTTTAACAACTACATGTTGAAAGT 465
Query 492 GTTGGAGGAGGATTGGAGAAAAGAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAATATC 551
|||||||||||| || || ||||||||||||||||| ||||| ||||| |||| ||| ||
Sbjct 466 GTTGGAGGAGGACTGTAGGAAAGAAAAACGTGACTTTCTTCATAGCCTTAGCAAAATTTC 525
Query 552 AATGCTACCTAA-AACAAATATGATTGATACAAGCAGAGAGG-CTCATGCTGGT-CAACT 608
|||| ||||||| ||||| ||||| ||| ||||||||| | ||||||||| | || ||
Sbjct 526 AATGTTACCTAAGAACAAG-ATGATCGATTCAAGCAGAG-GCTCTCATGCTGATTCA-CT 582
Query 609 AGTGCCGGTGGGTTCGAGTCCTCGAGTATCCTCAACTCCAGGCAAAGAA-CTCGTGGCTC 667
|||||| | || |||||||| |||||| |||| || || || | | |||||| ||
Sbjct 583 AGTGCC--T---TT-GAGTCCTCAAGTATCTTCAAAACCTGG-AACGGAGCTCGTGTCTA 635
Query 668 TGGCTAACATACCCATTCATGAGAAAAAAGCATATGTCTATGGGGAGGTTGTGAAGAAAC 727
|| |||||| |||||||||||||||||| || |||||||||| ||||||||||||||||
Sbjct 636 TGACTAACAAACCCATTCATGAGAAAAAGGCTTATGTCTATGCCGAGGTTGTGAAGAAAC 695
Query 728 TTAACACTTCAAGAGAACGAGGCATGCCATTTAGACCTGCTATGT-GTTTTAA-GGACGC 785
| ||| || |||||||||||||| ||||||||| |||||| | | ||| || || ||
Sbjct 696 TAAACTCTGCAAGAGAACGAGGCTTGCCATTTAAACCTGCAACATCGTTC-AATGGT-GC 753
Query 786 TTATGATACTCTTGGTGCTGAGGTAACTCGTGGAAAATCAGTCAACATGCAGAAAATATG 845
||||| | ||| || ||| | |||||||||||||||||||||||||||||||||||
Sbjct 754 ATATGAAAGTCTAGGAATTGATTTGACTCGTGGAAAATCAGTCAACATGCAGAAAATATG 813
Query 846 GCAGCTTGTTCAGGCAATAACAGGTGAAGATTCAGCAGTTCGACAGGGTGTTTCGAAGAG 905
||| ||| |||||||||| || ||||||||||||||||| | ||| |||||||| |||||
Sbjct 814 GCAACTTATTCAGGCAATGACGGGTGAAGATTCAGCAGTACAACATGGTGTTTCCAAGAG 873
Query 906 GATGGCCCTCGCGATAGGTGCAAGACATCATTTACAACATGGGCATGAGAAATTTATAAT 965
||||||||||| |||||||||||||| || || || ||||||||||||| ||||||
Sbjct 874 GATGGCCCTCGTGATAGGTGCAAGACGCCACTTGGAATGTGGGCATGAGAAACATATAAT 933
Query 966 GGACACAATTCAAACTCACCCTACACAGGCTGCTCTTGGTGGATCTGTTGGAAATTTGCA 1025
||| |||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 934 GGATACAATTCAAAGTCATCCTACACAAGCTGCTCTTGGTGGATCAGTTGGAAATTTGCA 993
Query 1026 AAGAATTCGTGCTTTCCTTCGGATTCGTTTGAGAGACTATGG-AGTTTTAGATTTTGATT 1084
||||||||||||||| |||||||||||| ||||||| ||||| | |||| ||||||||||
Sbjct 994 AAGAATTCGTGCTTTTCTTCGGATTCGTCTGAGAGATTATGGGA-TTTTGGATTTTGATT 1052
Query 1085 CAACTGATGCTCGTAGGCAGCCTCCTGTTGATACTACTTGGCAACAG 1131
|| ||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1053 CAGGTGATGCTCGTAGGCAGCCTCCAGTTGATACTACTTGGCAGCAG 1099
> Ahg345960 jgi|Araly1|345960|fgenesh1_pg.C_scaffold_4002302
Length=1092
Score = 398 bits (215), Expect = 2e-109
Identities = 236/246 (96%), Gaps = 1/246 (0%)
Strand=Plus/Plus
Query 500 AGGATTGGAGAAAAG-AAAAACGTGACTTCCTTCAGAGCCTCAGCAGAATATCAATGCTA 558
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGGATTGGAGAAAAGAAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAATATCAATGCTA 903
Query 559 CCTAAAACAAATATGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACTAGTGCCGGTG 618
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 CCTAAAACGAATTTGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACTAGTGCCGGTG 963
Query 619 GGTTCGAGTCCTCGAGTATCCTCAACTCCAGGCAAAGAACTCGTGGCTCTGGCTAACATA 678
| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 964 GCTTCGAGTCCTCCAATATCCTCAACACCAGGCAAAGAACTCGTGGCTCTGGCTAACATA 1023
Query 679 CCCATTCATGAGAAAAAAGCATATGTCTATGGGGAGGTTGTGAAGAAACTTAACACTTCA 738
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||
Sbjct 1024 CCCATTCATGAGAAAAAAGCATATGTGTATGGAGAGGTTGTGAAGATACTTAACACTTCA 1083
Query 739 AGAGAA 744
||||||
Sbjct 1084 AGAGAA 1089
Score = 324 bits (175), Expect = 4e-87
Identities = 189/196 (96%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 1927 AGGCAGAGAAACCTAATGCTGAAGCAGCTACTGACTGAGATTCTGCTTCGAGAAAGAGGT 1986
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 418 AGGCAGAGAAACTTAATGCTGAAGCAGCTACTGACTGAGATTCTGCCTCGAGAACGCGGT 477
Query 1987 ATTTACTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTC 2046
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTTTGCTTTTTGCTTGGGGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTC 537
Query 2047 CCTGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCT 2106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCTGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCT 597
Query 2107 GGATTATATGACAAAT 2122
||||||||||||||||
Sbjct 598 GGATTATATGACAAAT 613
Score = 285 bits (154), Expect = 2e-75
Identities = 168/175 (96%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 2122 TCCATAGAGTTACAGAAGAGGGTGGGTGCATTTTCCGCTGCCTTGGAGACTATAAACAAG 2181
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 TCCATAGAGATACAGAAGAGGGTGGGTGCATTTTCGGCTGCCTTGGAGACTATAAACAAG 720
Query 2182 TGTCTATCCGAAGCCATCTGTTCTCTTGCCCGTGGAAGGTTGGATGGTGAAAGTAGAACA 2241
|||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 721 TGTCTATCTGAAGCCATCTGTTCTTTTGCCCGTGGAAGGTTGGATGGTGAAAGCAGAACA 780
Query 2242 TCAGGGCTTATTCTCGCAGGGAACGATATTCTTGAGACTTACAAATATTACCCTG 2296
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 781 TCAGGGCTTATTCTTGCAGGGAACGATATTCTTCAGACTTACAAATATTACCCTG 835
Score = 89.8 bits (48), Expect = 1e-16
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1822 CATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTGCTGCT 1872
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 364 CATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACATGCTGCTGCT 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145836619736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5