BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41640.1
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483244 jgi|Araly1|483244|fgenesh2_kg.4__2304__AT2G41640.1 2628 0.0
> Ahg483244 jgi|Araly1|483244|fgenesh2_kg.4__2304__AT2G41640.1
Length=1679
Score = 2628 bits (1423), Expect = 0.0
Identities = 1601/1687 (95%), Gaps = 11/1687 (1%)
Strand=Plus/Plus
Query 30 CTCCTTCGTCCTCAAGAAAAGTAATTCTC--TGTTTGTGTAGTTTTCTTTACCGGTGAAT 87
|||||| |||| ||||||||||| ||||| |||||||||||||| |||||||| |||||
Sbjct 1 CTCCTTTGTCCCCAAGAAAAGTATTTCTCTGTGTTTGTGTAGTTTCCTTTACCGCTGAAT 60
Query 88 TTTCTCTTCGTTTTGTGCTTCAAACGTCACCCAAATCACCAAGATCGATCAAAATCGAAA 147
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCTCTCCGTTTTGTGCTTGAAACCTCACCCAAATCACCAAGATCGATCAAAATCGAAA 120
Query 148 CTTAACGTTTCAGAAGATGGTGCAGTACCAGAGATTAATCATCCACCATGGAAGAAAAGA 207
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTT-ACGTTTCAGAAGATGGTGCAGTACCAGAGATTAATCATCCACCATGGAAGAAAAGA 179
Query 208 AGATAAGTTTAGAGTTTCTTCAGCAGAGGAAAGTGGTGGAGGTGGTTGTTGCTACTCCAA 267
|| |||||||||| | ||||||||||||||||||||||||| | |||||||||| ||
Sbjct 180 GGAAAAGTTTAGAG--T-TTCAGCAGAGGAAAGTGGTGGAGGT-G--GTTGCTACTCTAA 233
Query 268 GAGAGCTAAACAAAAGTTTCGTTGTCTtctctttctctctatcctctcttgctgtttcgt 327
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 234 GAGAGCTAAACAAAAGTTTCGCTGCCTTCTCTTTCTCTCTATCCTCTCTTGCTGTTTCGT 293
Query 328 cttgtctccttattacctcttcggcttctctACTCTCTCCCTCCTAGATTCGTTTCGCAG 387
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CATGTCTCCTTATTACCTCTTCGGCTTCTCTACTCTCTCCCTCCTAGATTCGTTTCGCAG 353
Query 388 AGAAATCGAAGGTCTTAGCTCTTATGAGCCAGTTATTACCCCTCTGTGCTCAGAAATCTC 447
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 354 AGAAATCGAAGGTCTTAGCTCTTATGAGCCATTTATTACCCCTCTCTGCTCAGAAATCTC 413
Query 448 CAATGGAACCATTTGTTGTGACAGAACCGGTTTGAGATCTGATATTTGTGTAATGAAAGG 507
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 414 CAATGGAACCATTTGTTGTGACAGAACCGGTTTGAGATCTGATATATGTGTAATGAAAGG 473
Query 508 TGATGTTCGAACAAACTCTGCTTCTTCCTCAATCTTCCTCTTCACCTCCTCCACCAATAA 567
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 474 TGATATTCGTACAAACTCTGCTTCTTCCTCAATCTTCCTCTTCACCTCCTCCACCAAGAA 533
Query 568 CAACACAAAACCGGAAAAGATCAAACCTTACACTAGAAAATGGGAGACTAGTGTGATGGA 627
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 534 CAACACAAAACCGGAAAAGATCAAACCTTACACTAGAAAGTGGGAGACTAGTGTGATGGA 593
Query 628 CACCGTTCAAGAACTCAACCTCATCACCAAAGATTCCAACAAATCTTCAGATCGTGTATG 687
||| |||||||||||||||||||||||||||||||| || | ||||| |||||||| ||
Sbjct 594 CACAGTTCAAGAACTCAACCTCATCACCAAAGATTCGAATAGTTCTTCTGATCGTGTCTG 653
Query 688 CGATGTGTACCATGATGTTCCTGCTGTGTTCTTCTCCACTGGTGGATACACCGGTAACGT 747
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CGATGTGTACCACGATGTTCCTGCTGTGTTCTTCTCCACTGGTGGATACACCGGTAACGT 713
Query 748 ATACCACGAGTTTAACGACGGGATTATCCCTTTGTTTATAACTTCACAGCATTACAACAA 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 ATACCACGAGTTTAACGACGGGATTATCCCTTTGTTTATAACTTCACAGCATTACAACAA 773
Query 808 AAAAGTTGTGTTTGTGATCGTCGAGTATCATGACTGGTGGGAGATGAAGTATGGAGATGT 867
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 774 AAAAGTTGTGTTTGTGATCGTCGAGTATCATGATTGGTGGGAGATGAAGTATGGAGATAT 833
Query 868 CGTTTCGCAGCTCTCGGATTATCCTCTGGTTGATTTCAATGGAGATACGAGAACACATTG 927
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 834 CGTTTCGCAGCTCTCGGATTATCCTCTGGTTGATTTCAGTGGAGATGCGAGAACACATTG 893
Query 928 TTTCAAAGAAGCAACCGTTGGATTACGTATTCACGACGAGTTAACTGTGAATTCTTCTTT 987
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 894 TTTCAAAGAAGCAACCGTTGGATTACGTATTCACGATGAGTTAACTGTGAATTCTTCACT 953
Query 988 GGTCATTGGGAATCAAACCATTGTTGACTTCAGAAACGTTTTGGATAGGGGTTACTCGCA 1047
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 954 GGTCATTGGGAATCAAACCATTGTTGATTTCAGAAACGTTTTGGATCGGGGTTATTCGCA 1013
Query 1048 TCGTATCCAAAGCTTGACTCAGGAGGAAACAGAGGCGAACGTGACCGCACTCGATTTCAA 1107
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1014 TCGTATCCAAAGCTTGATTCAGGAGGAAACAGAGGCGAATGTGACCGCACTCGATTTCAA 1073
Query 1108 GAAGAAGCCAAAACTGGTGATTCTTTCAAGAAACGGGTCATCAAGGGCGATATTAAACGA 1167
|||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 1074 GAAGAAGCCAAAACTGGTGATTCTATCAAGAAACGGATCATCGAGGGCGATATTGAACGA 1133
Query 1168 GAATCTTCTCGTGGAGCTAGCAGAGAAAACAGGGTTCAATGTGGAGGTTCTAAGACCACA 1227
||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 1134 GAATCTTCTCGTGGAGCTAGCAGAGGAAACAGGATTCAATGTTGAGGTTCTAAGACCACA 1193
Query 1228 AAAGACAACGGAAATGGCCAAGATTTATCGTTCGTTGAACACGAGCGATGTAATGATCGG 1287
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1194 AAAAACAACGGAAATGGCTAAGATTTATCGTTCGTTGAACACGAGCGATGTGATGATCGG 1253
Query 1288 TGTACATGGAGCAGCAATGACTCATTTCCTTTTCTTGAAACCGAAAACCGTTTTCATTCA 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TGTACATGGAGCAGCAATGACTCATTTCCTTTTCTTGAAACCGAAAACCGTTTTCATTCA 1313
Query 1348 GATCATCCCATTAGGGACGGACTGGGCGGCAGAGACATATTATGGAGAACCGGCGAAGAA 1407
||||||||| |||||||| || ||||||||||||||||| || || ||||||||||||||
Sbjct 1314 GATCATCCCCTTAGGGACCGATTGGGCGGCAGAGACATACTACGGTGAACCGGCGAAGAA 1373
Query 1408 GCTAGGATTGAAGTACGTTGGTTACAAGATTGCGCCGAAAGAGAGCTCTTTGTATGAAGA 1467
|||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1374 GCTAGGATTGAAGTACATTGGATACAAGATTGCGCCGAAAGAGAGCTCTTTATATGAAGA 1433
Query 1468 ATATGGGAAAGATGACCCTGTAATCCGAGATCCGGATAGTCTAAACGACAAAGGATGGGA 1527
||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct 1434 ATATGGGAAAGATGATCCTATAATCCGAGATCCGGATAGTCTCAACGATAAAGGATGGGA 1493
Query 1528 ATATACGAAGAAAATCTATCTACAAGGACAGAACGTGAAGCTTGACTTGAGAAGATTCAG 1587
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1494 ATATACGAAGAAAATATATCTACAAGGACAAAACGTGAAGCTTGACTTGAGAAGATTCAG 1553
Query 1588 AGAAACGTTAACTCGTTCGTATGATTTCTCCATTAGAAGGAGATTTAGAGAAGATTACTT 1647
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1554 AGAAACGTTAACTCGTTCCTATGATTTCTCCATTAGGAGGAGATTTAGAGAAGATTACTT 1613
Query 1648 GTTACATAGAGAAGATTAAGAATC-GTGTGATattttttttgtaaagttttgaatgacaa 1706
|||||||||||||||||||||| | | || | | |||||||| |||||||||||||||
Sbjct 1614 GTTACATAGAGAAGATTAAGAAGCAGAA-GAAAGTGTTTTTGTAGAGTTTTGAATGACAA 1672
Query 1707 ttaaatt 1713
|||||||
Sbjct 1673 TTAAATT 1679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67952997080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5