BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41660.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902141 jgi|Araly1|902141|Al_scaffold_0004_2791 1208 0.0
> Ahg902141 jgi|Araly1|902141|Al_scaffold_0004_2791
Length=765
Score = 1208 bits (654), Expect = 0.0
Identities = 704/729 (97%), Gaps = 0/729 (0%)
Strand=Plus/Plus
Query 289 AGATGCTCCTATGTCCCTCTCTCCTCCTCATCGTCGGCCTCTCACAATATCGGGAAATTT 348
||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 37 AGATGCTCCTACGTCCCTCTCTCCTCCTCATCGTCGTCCTCTAACAATATCGGGAAACTC 96
Query 349 CACTTGAAGTTTTCTTTGCTCTTGCGTTCTTTCATCAACATCATTAACATCCCCGCTTGC 408
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 97 CACTTGAAGTTTTCTTTGCTCTTGCGTTCTTTCATCAACATCATTAATATCCCCGCTTGC 156
Query 409 AAAATGCTCTCTCTTCCCTCTCCGCCGTCTTCTTCTTCCAGCGTCTCTAACCAACTGATC 468
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 157 AAAATCCTCTCTCTTCCCTCTCCGCCGTCTTCTTCTTCCGGCGTCTCTAACCAACTGATC 216
Query 469 TCACTCGTTACCGGTGGATCCTCTTCTCTCGGGAGAAGAGTCACCGGGACTCTGTACGGA 528
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 217 TCACTCGTCACCGGTGGATCCTCTTCTCTCGGGAGAAGAGTTACCGGGACTCTGTACGGA 276
Query 529 CACAAAAGAGGCCACGTCACGTTTTCGGTCCAGTACAACCAAAGATCCGACCCGGTCTTG 588
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 277 CACAAAAGAGGCCACGTCACGTTTTCGGTCCAGTACAACCAGAGATCCGACCCGGTCTTG 336
Query 589 CTCCTCGACCTGGCCATGTCAACGGCAACTCTCGTCAAAGAGATGTCGTCGGGGCTCGTC 648
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 337 CTCCTGGACCTGGCCATGTCAACGGCAACTCTCGTCAAAGAGATGTCCTCGGGGCTCGTC 396
Query 649 AGGATCGCGTTGGAGTGCGAGAAGCGTCATCGATCAGGTACGAAGCTTTTCCAAGAGCCC 708
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 397 AGGATCGCTTTGGAGTGCGAGAAGCGTCATCGATCAGGAACGAAGCTTTTCCAAGAGCCC 456
Query 709 AAATGGACGATGTACTGCAACGGGAGGAAGTGCGGCTACGCTGTGTCACGTGGCGGCGCG 768
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 457 AAATGGACGATGTACTGCAACGGGAGAAAGTGCGGTTACGCTGTGTCACGTGGCGGGGCG 516
Query 769 TGTACTGATACAGATTGGCGCGTGTTGAACACGGTATCTAGGGTTACTGTTGGAGCCGGA 828
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 517 TGTACTGACACGGATTGGCGCGTGTTGAACACGGTCTCTAGGGTTACTGTTGGAGCCGGA 576
Query 829 GTTATTCCGACGCCGAAAACTATTGATGACGTGTCCGGTGTTGGTAGTGGAACGGAGCTT 888
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GTTATTCCGACGCCGAAGACTATTGATGACGTGTCCGGTGTTGGTAGTGGAACGGAGCTT 636
Query 889 GGTGAGTTGTTGTATATGAGAGGCAAATTTGAACGAGTCGTTGGGAGCCGTGACTCGGAG 948
|| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 637 GGGGAGCTGTTGTATATGAGAGGAAAATTTGAACGAGTCGTTGGGAGCCGTGACTCGGAG 696
Query 949 GCGTTTTACATGATGAACCCGGACAAAAACGGAGGTCCAGAACTCAGTATTTTTCTTCTT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GCGTTTTACATGATGAACCCGGACAAAAACGGAGGTCCAGAACTCAGTATTTTTCTTCTT 756
Query 1009 AGAATATAA 1017
|||||||||
Sbjct 757 AGAATATAA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5