BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41670.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935018 jgi|Araly1|935018|scaffold_403006.1 2026 0.0
> Ahg935018 jgi|Araly1|935018|scaffold_403006.1
Length=1201
Score = 2026 bits (1097), Expect = 0.0
Identities = 1167/1201 (97%), Gaps = 4/1201 (0%)
Strand=Plus/Plus
Query 17 GCTG-TTGTTGCCGGAGAAAATGGTGATGATGTTGAAGAAGACAGTGAAGAAAGGTTTAA 75
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTGTTTGTTGCCGGAGAAAATGGTGATGATGTTGAAGAAGACAGTGAAGAAAGGTTTAA 60
Query 76 TCGGCGGAATGAGCTTCGCTAAAGACGCCGGAAAAATCAATTGGTTTCCCGGTCATATGG 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGGCGGAATGAGCTTCGCTAAAGACGCCGGAAAAATCAATTGGTTTCCCGGTCATATGG 120
Query 136 CTGCAGCTACTCGCGCCATTCGTAACCGCCTCAAGCTCTCCGATCTCGTTATCGAAGTTC 195
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 121 CTGCAGCAACTCGCGCCATTCGCAACCGCCTCAAGCTCTCCGACCTCGTTATCGAAGTTC 180
Query 196 GCGATGCTCGTATTCCTCTGTCATCGGCGAACGAAGATCTACAATCCCAAATGTCAGCTA 255
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 GCGATGCTCGTATTCCTCTGTCATCGGCGAACGAGGATCTACAATCCCAAATGTCAGCTA 240
Query 256 AGAGACGTATCATTGCTCTGAATAAGAAAGATTTAGCAAACCCTAATGTTCTCAATAAAT 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAGACGTATCATTGCTCTGAATAAGAAAGATTTAGCAAACCCTAATGTTCTCAATAAAT 300
Query 316 GGACTCGTCATTTCGAATCCAGCAAGCAAGATTGTATTGCCATTAATGCTCATAGCAGAA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGACTCGTCATTTCGAATCCAGCAAGCAAGATTGTATTGCCATTAATGCTCATAGCAGAA 360
Query 376 GCTCTGTCATGAAGCTGCTTGATCTCGTGGAGTTGAAGCTCAAAGAAGTGATTGCTAGGG 435
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GCTCTGTCATGAAGCTTCTTGATCTCGTGGAGTTGAAGCTCAAGGAAGTGATTGCTAGGG 420
Query 436 AGCCTACTTTACTTGTAATGGTGGTTGGTGTCCCCAATGTTGGAAAATCTGCGCTCATTA 495
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 AGCCTACTTTACTTGTAATGGTGGTTGGTGTCCCCAATGTTGGAAAATCTGCACTCATTA 480
Query 496 ACTCGATCCATCAAATTGCAGCAGCTCGTTTTCCGGTGCAGGAGAGATTAAAGAGAGCTA 555
| ||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 481 ATTCGGTCCATCAAATCGCAGCAGCTCGCTTTCCTGTGCAGGAGAGATTAAAGAGAGCTA 540
Query 556 CGGTTGGTCCATTGCCTGGTGTAACACAAGATATTGCTGGTTTCAAGATTGCTCATCGAC 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGGTTGGTCCATTGCCTGGTGTAACACAAGATATTGCTGGTTTCAAGATTGCTCATCGAC 600
Query 616 CTAGTATATATGTTCTAGACTCCCCTGGTGTGTTGGTTCCAAGTATCCCTGATATCGAAA 675
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 601 CTAGCATATATGTTCTAGACTCCCCTGGTGTGTTGGTACCAAGTATTCCTGATATCGAAA 660
Query 676 CCGGTTTGAAGCTTGCTCTTTCAGGGTCCGTTAAAGATTCAGTAGTGGGTGAAGAGCGGA 735
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCGGTTTAAAGCTTGCTCTTTCAGGGTCCGTTAAAGATTCAGTAGTGGGTGAAGAGCGGA 720
Query 736 TTGCACAATACTTTCTAGCTATTCTAAACATTCGAGGGACTCCTCTTCATTGGAAGTACT 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGCACAATACTTTCTAGCTATTCTAAACATTCGAGGGACTCCTCTTCATTGGAAGTACT 780
Query 796 TAGTTGAGGGAATAAACGAAGGGCCTCATGCAGACTGCATCGATAAGCCAAGCTATAACT 855
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 TAGTTGAGGGAAGAAACGAAGGGCCTCATGCAGACTGCATCGATAAACCAAGCTATAACT 840
Query 856 TAAAGGATCTTCGACACCAGAGAACCAAACAACCAGATTCATCTGCTCTGCACTATGTCG 915
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 TAAAGGATCTTCGACACCAGAGAACCAAACAGCCAGATTCATCTGCTCTGCACTATGTCG 900
Query 916 GGGATATGATTTCAGAAGTGCAACGATCACTGTATATAACACTCTCAGAATTTGATGGGG 975
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 901 GGGATATGATTTCAGAAGTGCAACGATCACTGTATATAACGCTCTCAGAATTTGATGGGG 960
Query 976 ACACGGAGGATGAGAATGATTTAGAATGTTTGATAGAGCAACAGTTTGAAGTTCTACAAA 1035
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 961 ACACAGAGGATGAGAATGATTTGGAATGTTTGATAGAGCAACAGTTTGAAGTTCTACAGA 1020
Query 1036 AGGCATTGAAGATTCCTCACAAAGCATCCGAAGCAAGGTTAATGGTCTCCAAGAAATTTC 1095
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGGCACTGAAGATTCCTCACAAAGCATCCGAAGCAAGGTTAATGGTCTCCAAGAAATTTC 1080
Query 1096 TTACTTTGTTTAGGACAGGTAGACTTGGTCCCTTTATCCTTGACGATGTCCCTGAAACTG 1155
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1081 TTACTTTGTTTAGGACAGGTAGACTTGGTCCCTTCATCCTTGACGATGTCCCTGAAACTG 1140
Query 1156 AAACTGACCACCCCAATTCAAAACGGGTAGTTGTTTTGTAAAAT---CTTAAAGCAAATT 1212
|||||||||||||||||| | ||||||||| |||| ||||||| |||||||||||||
Sbjct 1141 AAACTGACCACCCCAATTTGAGACGGGTAGTAGTTTCGTAAAATAATCTTAAAGCAAATT 1200
Query 1213 G 1213
|
Sbjct 1201 G 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5