BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41680.1
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902143 jgi|Araly1|902143|Al_scaffold_0004_2793 2649 0.0
> Ahg902143 jgi|Araly1|902143|Al_scaffold_0004_2793
Length=1596
Score = 2649 bits (1434), Expect = 0.0
Identities = 1545/1598 (97%), Gaps = 10/1598 (1%)
Strand=Plus/Plus
Query 28 ATGGCTGCGTCTCCCAAGATAGGCATCGGTATTGCctccgtctcatcgcctcaccgtgtc 87
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||
Sbjct 1 ATGGCTGCGTCTCCCAAGATAGGCATCGGAATTGCCTCCGTCTCCTCGTCTCACCGCGTC 60
Query 88 tccgccgcctcatccgctctttctcctcc-tcctcatctcTTCT-T-TC-TCACTACTAC 143
||||||||||||||||||||||||||||| | ||||||||||| | || |||||||||
Sbjct 61 TCCGCCGCCTCATCCGCTCTTTCTCCTCCGT-ATCATCTCTTCTCTCTCAGCACTACTAC 119
Query 144 TACTAC--C-ACACGTCACGGCGGCTCCTAT-CTCCTCCGTCAACCAACCCGAACTCGCT 199
|||||| | ||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 120 TACTACTACTACACGTCACGGCGGCTCCT-TCCTTCTCCGTCAACCAACCCGAACTCGCT 178
Query 200 CTTCTGATTCCCTCCGCCTCAGAGTCTCCGCCACCGCCAATTCTCCGTCTTCTTCTTCTT 259
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 CTTCCGATTCCCTCCGCCTCAGAGTCTCCGCCACCGCCAATTCGACGTCTTCTTCTTCAG 238
Query 260 CAGGAGGCGAGATTATCGAGAATGTAGTGATTATAGGCTCCGGTCCCGCCGGTTATACGG 319
|| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 239 GAGCAGGCGAGATTATCGAGAATGTAGTGATTATAGGCTCAGGTCCGGCCGGTTATACGG 298
Query 320 CGGCGATATATGCAGCGCGCGCCAATTTGAAGCCGGTGGTTTTTGAAGGGTATCAGATGG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGGCGATATATGCAGCGCGCGCCAATTTGAAGCCGGTGGTTTTTGAAGGGTATCAGATGG 358
Query 380 GCGGAGTTCCCGGTGGACAGTTGATGACAACTACTGAAGTTGAGAATTTTCCGGGATTCC 439
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 359 GCGGAGTTCCCGGTGGACAGTTGATGACAACCACTGAAGTTGAGAATTTTCCAGGATTCC 418
Query 440 CAGACGGTATCACGGGTCCCGATTTAATGGAGAAAATGAGAAAGCAAGCAGAGAGGTGGG 499
|||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 419 CAGACGGTATTACGGGGCCGGATTTAATGGAGAAAATGAGAAAGCAAGCTGAGAGATGGG 478
Query 500 GAGCAGAGTTGTATCCAGAAGATGTTGAATCTCTTAGTGTCACAACTGCTCCTTTTACTG 559
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 479 GAGCAGAGTTGTATCCAGAAGATGTTGAATCTCTTAATGTCACAACTGCTCCTTTTACTG 538
Query 560 TGCAAACTAGTGAACGTAAGGTCAAGTGCCATAGTATTATATATGCCACTGGCGCTACAG 619
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 TGCAAACTAGTGAACGTAAGGTCAAGTGCCATAGTATTATATATGCCACTGGAGCTACAG 598
Query 620 CAAGGAGGTTAAGGTTACCTCGAGAGGAAGAATTCTGGAGTAGGGGGATAAGTGCTTGTG 679
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 CAAGGAGGTTAAGGTTACCTCGAGAGGAAGAGTTCTGGAGTAGGGGGATAAGTGCTTGTG 658
Query 680 CTATCTGTGATGGAGCTTCGCCTTTATTTAAGGGGCAAGTACTTGCCGTGGTTGGAGGAG 739
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAATCTGTGATGGAGCTTCTCCTTTATTTAAGGGGCAAGTACTTGCCGTGGTTGGAGGAG 718
Query 740 GAGATACGGCTACAGAGGAAGCCTTGTATCTCACGAAATATGCCCGTCATGTTCATTTGC 799
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 719 GAGATACGGCTACAGAGGAAGCCTTGTACCTTACGAAATATGCCCGTCATGTTCATTTGC 778
Query 800 TTGTTCGCAGAGATCAGTTGAGAGCTTCCAAGGCTATGCAAGATAGAGTGATCAACAATC 859
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTGTTCGCAGAGACCAGTTGAGAGCTTCCAAGGCTATGCAAGATAGAGTGATCAACAATC 838
Query 860 CAAACATCACAGTGCATTACAACACGGAAACCGTGGACGTATTGAGCAACACCAAGGGAC 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CAAACATCACAGTGCATTACAACACGGAAACCGTGGACGTATTGAGCAACACCAAGGGAC 898
Query 920 AGATGTCTGGCATTCTACTCAGAAGACTTGATACGGGTGAAGAAACTGAGCTGGAGGCAA 979
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 AGATGTCTGGCATTCTACTCAGAAGACTTGATACGGGTGAAGAAACCGAGCTGGAGGCAA 958
Query 980 AAGGATTGTTTTATGGAATAGGGCATTCGCCAAACAGTCAGTTATTGGAAGGCCAAGTCG 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGGATTGTTTTATGGAATAGGGCATTCGCCAAACAGTCAGTTATTGGAAGGCCAAGTCG 1018
Query 1040 AACTCGACAGCTCCGGGTACGTCTTGGTTCGGGAAGGAACATCAAATACATCAGTTGAAG 1099
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AACTCGACAGCTCGGGGTACGTCTTGGTTCGGGAAGGAACATCAAATACATCAGTTGAAG 1078
Query 1100 GTGTATTTGCTGCAGGAGATGTGCAGGACCACGAATGGAGACAAGCTGTAACTGCTGCTG 1159
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1079 GCGTATTTGCTGCAGGAGATGTGCAGGACCATGAATGGAGACAAGCTGTAACTGCTGCGG 1138
Query 1160 GATCAGGATGCATAGCTGCTTTGTCAGCCGAGAGATACCTCACAAGTAACAATCTTCTTG 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GATCAGGATGCATAGCTGCTTTGTCAGCCGAGAGATACCTCACAAGTAACAATCTTCTTG 1198
Query 1220 TTGAATTTCACCAGCCTCAAACTGAAGAGGCCAAGAAAGAATTCACACAACGGGATGTCC 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1199 TTGAATTTCACCAGCCTCAAACTGAAGAGGCCAAGAAAGAATTCACACAACGCGATGTCC 1258
Query 1280 AAGAAAAGTTTGACATCACTCTTACAAAGCACAAGGGACAGTATGCTCTTAGAAAACTAT 1339
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1259 AAGAAAAGTTTGACATCACTCTTACAAAGCATAAGGGACAGTATGCTCTTAGAAAATTAT 1318
Query 1340 ACCATGAGAGTCCAAGAGTTATATTGGTACTATACACTTCACCAACATGTGGCCCCTGTA 1399
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 ACCATGAGAGTCCAAGAGTTATATTGGTACTATACACTTCACCAACGTGTGGCCCCTGTA 1378
Query 1400 GGACTCTGAAGCCTATTTTGAACAAGGTGGTCGATGAGTATAACCATGATGTGCATTTTG 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGACTCTGAAGCCTATTTTGAACAAGGTGGTCGATGAGTATAACCATGATGTGCATTTTG 1438
Query 1460 TTGAGATTGACATCGAGGAAGATCAAGAAATTGCTGAAGCAGCTGGAATTATGGGAACCC 1519
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1439 TTGAGATTGACATTGAGGAAGATCAAGAAATTGCTGAAGCAGCTGGAATCATGGGAACCC 1498
Query 1520 CATGTGTGCAGTTCTTCAAGAACAAGGAAATGCTCAGGACTATATCGGGTGTGAAGATGA 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CATGTGTGCAGTTCTTCAAGAACAAGGAAATGCTCAGGACTATATCGGGTGTGAAGATGA 1558
Query 1580 AGAAAGAGTACCGAGAATTCATTGAGGCCAATAAATGA 1617
||||||||||||| ||||||||||||||||||||||||
Sbjct 1559 AGAAAGAGTACCGGGAATTCATTGAGGCCAATAAATGA 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67991087325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5