BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41690.1 Length=735 Score E Sequences producing significant alignments: (Bits) Value Ahg321853 jgi|Araly1|321853|fgenesh1_pm.C_scaffold_4001910 1127 0.0 > Ahg321853 jgi|Araly1|321853|fgenesh1_pm.C_scaffold_4001910 Length=744 Score = 1127 bits (610), Expect = 0.0 Identities = 701/744 (94%), Gaps = 9/744 (1%) Strand=Plus/Plus Query 1 ATGGAAGATGCTGGTGAACATTTACGGTGTAACGATAACGTTAACGACGAGGAGCGTTTG 60 |||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct 1 ATGGAAGATGCTGGTGAACATTCACGGTGTAGCGATAACATTAACGACGAGGAGCGTTTG 60 Query 61 CCATTGGAGTTTATGATCGGAAACTCAACATCCACGGCGGAGCTACAGCCG------CCT 114 ||||||||||||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 61 CCATTGGAGTTTATGATCGGAAAGTCAACATCCACGGCGGAGCTAGAGCCGCCACCACCG 120 Query 115 CCACCGTTCTTGGTAAAGACATACAAAGTGGTGGAGGATCCGACGACGGACGGGGTTATA 174 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| Sbjct 121 CCACCGTTCTTGGTAAAGACATACAAAGTGGTGGAGGATCCGACAACGAACGAGGTTATA 180 Query 175 TCTTGGAACGAATACGGAACTGGTTTCGTCGTGTGGCAGCCGGCAGAATTCGCTAGAGAT 234 |||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 181 TCTTGGAACGAAGACGGAACTGGCTTCGTCGTGTGGCAGCCGGCAGAATTCTCTAGAGAT 240 Query 235 CTGTTACCAACACTTTTCAAGCATTGCAACTTCTCTAGCTTCGTTCGCCAGCTCAATACT 294 ||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 CTGGTACCGACACTTTTCAAGCATTGCAACTTCTCTAGCTTCGTTCGGCAGCTCAATACT 300 Query 295 TACGGTTTTCGAAAAGTAACGACGATAAGATGGGAATTTAGTAATGAGATGTTTCGAAAG 354 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TACGGGTTTCGAAAAGTAACGACGATAAGATGGGAATTTAGTAATGAGATGTTTCGAAAG 360 Query 355 GGGCAAAGAGAGCTTATGAGCAATATCCGAAGAAGGAAGAGCCAACATTGGTCACACAAC 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GGGCAAAGAGAGCTTATGAGCAATATCCGAAGAAGGAAGAGCCAACATTGGTCACACAAC 420 Query 415 AAGTCTAATCACCAGGTTGTACCAACAACAACGATGGTGAATCAAGAAGGTCATCAACGG 474 |||||| || | ||||||||| |||||||||||| |||||| ||||||| |||||||||| Sbjct 421 AAGTCTCATTATCAGGTTGTATCAACAACAACGACGGTGAAGCAAGAAGATCATCAACGG 480 Query 475 ATTGGGATTGATCATCACCATGAGGATCAACAGTCTTCCGCCACTTCATCCTCTTTCGTA 534 ||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| ||| Sbjct 481 ATTGGGACTGATCATCACCATGAGGATCAACGGTCTTCCGCCACTTCCTCCTCTTTTGTA 540 Query 535 TACACTGCATTACTCGACGAAAACAAATGCTTGAAGAATGAAAACGAGTTATTAAGCTGC 594 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 541 TACACTGCATTACTCGACGAAAACAAGTGCTTGAAGAATGAAAACGAGTTATTAAGCTGC 600 Query 595 GAACTTGGGAAAACCAAGAAGAAATGCAAGCAGCTTATGGAGTTGGTGGAGAGATACAGA 654 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GAACTGGGGAAAACCAAGAAGAAATGCAAGCAGCTTATGGAGTTGGTGGAGAGATACAGA 660 Query 655 GGAGAAGACGAAGATGCAACTGATGAAA--G-TGATGATGAAGAAGATGAAGGGCTTAAG 711 | ||| |||||||||| ||| ||||||| | |||||||||||||||||| ||||||||| Sbjct 661 GTAGATGACGAAGATGAAACCGATGAAAATGATGATGATGAAGAAGATGATGGGCTTAAG 720 Query 712 TTGTTCGGAGTAAAACTTGAATGA 735 |||||||||||||||||||||||| Sbjct 721 TTGTTCGGAGTAAAACTTGAATGA 744 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27067271070 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5