BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41690.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321853 jgi|Araly1|321853|fgenesh1_pm.C_scaffold_4001910 1127 0.0
> Ahg321853 jgi|Araly1|321853|fgenesh1_pm.C_scaffold_4001910
Length=744
Score = 1127 bits (610), Expect = 0.0
Identities = 701/744 (94%), Gaps = 9/744 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGATGCTGGTGAACATTTACGGTGTAACGATAACGTTAACGACGAGGAGCGTTTG 60
|||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 1 ATGGAAGATGCTGGTGAACATTCACGGTGTAGCGATAACATTAACGACGAGGAGCGTTTG 60
Query 61 CCATTGGAGTTTATGATCGGAAACTCAACATCCACGGCGGAGCTACAGCCG------CCT 114
||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 61 CCATTGGAGTTTATGATCGGAAAGTCAACATCCACGGCGGAGCTAGAGCCGCCACCACCG 120
Query 115 CCACCGTTCTTGGTAAAGACATACAAAGTGGTGGAGGATCCGACGACGGACGGGGTTATA 174
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 121 CCACCGTTCTTGGTAAAGACATACAAAGTGGTGGAGGATCCGACAACGAACGAGGTTATA 180
Query 175 TCTTGGAACGAATACGGAACTGGTTTCGTCGTGTGGCAGCCGGCAGAATTCGCTAGAGAT 234
|||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 181 TCTTGGAACGAAGACGGAACTGGCTTCGTCGTGTGGCAGCCGGCAGAATTCTCTAGAGAT 240
Query 235 CTGTTACCAACACTTTTCAAGCATTGCAACTTCTCTAGCTTCGTTCGCCAGCTCAATACT 294
||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 CTGGTACCGACACTTTTCAAGCATTGCAACTTCTCTAGCTTCGTTCGGCAGCTCAATACT 300
Query 295 TACGGTTTTCGAAAAGTAACGACGATAAGATGGGAATTTAGTAATGAGATGTTTCGAAAG 354
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACGGGTTTCGAAAAGTAACGACGATAAGATGGGAATTTAGTAATGAGATGTTTCGAAAG 360
Query 355 GGGCAAAGAGAGCTTATGAGCAATATCCGAAGAAGGAAGAGCCAACATTGGTCACACAAC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGCAAAGAGAGCTTATGAGCAATATCCGAAGAAGGAAGAGCCAACATTGGTCACACAAC 420
Query 415 AAGTCTAATCACCAGGTTGTACCAACAACAACGATGGTGAATCAAGAAGGTCATCAACGG 474
|||||| || | ||||||||| |||||||||||| |||||| ||||||| ||||||||||
Sbjct 421 AAGTCTCATTATCAGGTTGTATCAACAACAACGACGGTGAAGCAAGAAGATCATCAACGG 480
Query 475 ATTGGGATTGATCATCACCATGAGGATCAACAGTCTTCCGCCACTTCATCCTCTTTCGTA 534
||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 481 ATTGGGACTGATCATCACCATGAGGATCAACGGTCTTCCGCCACTTCCTCCTCTTTTGTA 540
Query 535 TACACTGCATTACTCGACGAAAACAAATGCTTGAAGAATGAAAACGAGTTATTAAGCTGC 594
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TACACTGCATTACTCGACGAAAACAAGTGCTTGAAGAATGAAAACGAGTTATTAAGCTGC 600
Query 595 GAACTTGGGAAAACCAAGAAGAAATGCAAGCAGCTTATGGAGTTGGTGGAGAGATACAGA 654
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAACTGGGGAAAACCAAGAAGAAATGCAAGCAGCTTATGGAGTTGGTGGAGAGATACAGA 660
Query 655 GGAGAAGACGAAGATGCAACTGATGAAA--G-TGATGATGAAGAAGATGAAGGGCTTAAG 711
| ||| |||||||||| ||| ||||||| | |||||||||||||||||| |||||||||
Sbjct 661 GTAGATGACGAAGATGAAACCGATGAAAATGATGATGATGAAGAAGATGATGGGCTTAAG 720
Query 712 TTGTTCGGAGTAAAACTTGAATGA 735
||||||||||||||||||||||||
Sbjct 721 TTGTTCGGAGTAAAACTTGAATGA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5