BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41705.1
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483250 jgi|Araly1|483250|fgenesh2_kg.4__2310__AT2G41705.1 2418 0.0
> Ahg483250 jgi|Araly1|483250|fgenesh2_kg.4__2310__AT2G41705.1
Length=1639
Score = 2418 bits (1309), Expect = 0.0
Identities = 1497/1586 (94%), Gaps = 20/1586 (1%)
Strand=Plus/Plus
Query 163 TTAGCTCGATTTCTCCGCCGGCGACTTTTGGGATCAAATTTGATTCTTCACGATTAAGAT 222
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTAGCTCGATTTCTCCGCCGGCGACTTTT-GGATCAAATTTGATTCTTCACGATTAAGAT 59
Query 223 TGAATTCGCCATTAGGTGGAGCATCATTTAAG-AAT-CTTATGCTTTGGCTACAACGCCT 280
||||||||||||||||| ||| || |||||| ||| | | || |||||| |||| ||||
Sbjct 60 TGAATTCGCCATTAGGTAAAGC-TCCTTTAAGAAATAC-TGTGTTTTGGCAACAAAGCCT 117
Query 281 ATGGATACGGGTCAAAGCAGCATAG---AACCTTATC-AAGCCAAGTCTTTTAGTCGGGA 336
|||||| | ||||||||| || ||| |||| || | || |||||||||||||||||||
Sbjct 118 ATGGATTCCGGTCAAAGCCGCGTAGAACAACCCTACCGAA-CCAAGTCTTTTAGTCGGGA 176
Query 337 GAGCAGTGTAGCCTCTTCTTTAAGCTTATCACGTAGTTTGCCTCACCTAATTGACAATGA 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAGCAGTGTAGCCTCTTCTTTAAGCTTATCACGTAGTTTGCCTCACCTAATTGACAATGA 236
Query 397 CGTCGATAGTGAGAGTGTCTCAGAGGCAGGGGATATTGGGGACCGCTCACTTCGGAGAAG 456
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 237 CGTCGATAGTGAGAGTGTCTCAGAGGCTGGGGATATTGGTGATCGCTCACTTCGGAGAAG 296
Query 457 GCATAGTGCTGGTAGAAGCAGCCGTTTGTCTGCTGATGATTTTATAGAACAAGGGACTCA 516
||||||||||||| ||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 297 GCATAGTGCTGGTCGAAGCAGCCGTTTGTCTGCCGATGATTTGATGGAACAAGGGACTCA 356
Query 517 TGATACTTCTCGTCAAGAACAAGATATATTACATGACCTTCGAGCTTTCAACACTGCTTC 576
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||
Sbjct 357 TGATACTTCTCGTCAAGAACAAGATGTATTACATGATCTTCGAGCTTTCAACACAGCTTC 416
Query 577 CGTAAATAAAACTTTGCCTGAGGACATAACAGCATCTCCTTTACCGACCAAGTCACTCTT 636
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 TGTTAATAAACCTTTGCCTGAGGATATAACAGCATCTCCTTTACCGACCAAGTCACTCTT 476
Query 637 GTCACCTGAAATAAACAACTCCGGAAA-GGAGGAAGAGCGAGTGTTACCAAAGTCCTTGG 695
||||||||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 477 GTCACCTGAGATAAACAAC-CCGGAAAAGGAGGAAGAGCGCGTGTTACCAAAGTCCTTGG 535
Query 696 AGTACATATCATGCCTAATTCATTTGGCTGTTTTTGGGATTTTTGGGGCCATTACGAGAT 755
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATTACATATCATGTCTAATTCATTTGGCTGTTTTTGGGATTTTTGGGGCCATTACGAGAT 595
Query 756 ATTTGCTGCAAAAATTGTTTGGGCCAACTGGTGCTCGAGTAACAAGTGATGGGAGCATCT 815
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 596 ATTTGCTGCAGAAATTGTTTGGACCAACTGGTGCTCGAGTAACAAGTGATGGAAGCATCT 655
Query 816 TGTACCTTGATCTTCCCTCCAACATGGTAGGATCATTCTTGATGGGTTGGTTTGGCGTTG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 656 TGTACCTTGATCTTCCCTCCAACATGGTAGGATCATTCTTGATGGGTTGGTTTGGTGTCG 715
Query 876 TATTCAAAGCAGATATAGCAAGAGTTTCTGAATTTGTGGCGATAGGATTATCGACTGGTT 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TATTCAAAGCAGATATAGCAAGAGTTTCTGAATTTGTGGCGATAGGATTATCGACTGGTT 775
Query 936 ATTTGGGGAGTCTGACAACATTCAGCGGTTGGAACCAGAAAATGCTGGATCTTAGTGCTG 995
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ATTTGGGGAGCCTGACAACATTCAGCGGTTGGAACCAGAAAATGCTGGATCTTAGTGCTG 835
Query 996 ATGGTCAATGGGTGTATGCTGTGCTTGGCTTT-TTATTAGGATTGTTTCTCACGTCATAC 1054
||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 836 ATGGTCAATGGGTATATGCCCTGCTTGGCTTTCTT-TTAGGATTGTTTCTCACGTCATAC 894
Query 1055 TCCATAATTCTGGGAGTGGAAACGGCCAAAGGGTTTAAATGGCTTCTTCATAGAAGAGCT 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TCCATAATTCTGGGAGTGGAAACGGCCAAAGGGTTTAAATGGCTTCTTCATAGAAGAGCT 954
Query 1115 TCTTCTGAGGATAAATTC-CATTGTCTTAAGGTTAACACCTTCCAGAGCCATATTGTGTC 1173
||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 955 TCTTCTGAGGAAAAACACTC-TTGTCTTAAGGTTAACACCTTCCAGAGCCATATTGTGTC 1013
Query 1174 TCTGACCCTGATGCTTCTGTTGCTTGTGGCTTTACTCACTGCCAGTTCCATACTGCTTGT 1233
| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1014 TATGACCCTGATGCTTCTGTTGCTTGTGGCTTTACTCACTGCGAGTTCCATTCTGCTTGT 1073
Query 1234 GAAAGAGTTTGACAAAGGAACAAGCGAGGCTCAGCTATGGTTTGGTTGCTTAGTTGCAGC 1293
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1074 GAAAGAGTTTGACAAAGGAACAAGCGAGGCTCAACTATGGTTAGGTTGCTTAGTTGCAGC 1133
Query 1294 CCCTGGTGTCTGGCTCAGATGGTTCTTAGCCCGACTCAATGGACGTGGGCTGGGAAAGGA 1353
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1134 CCCTGGTGTCTGGCTCAGATGGTTCTTAGCCCGACTCAATGGACGTGGACTGGGAAAAGA 1193
Query 1354 TAGTCAAAATTTGAGATGGGTCCCATTTGGCACCCTCATTGCAAATGTAGTTGCAGCTTG 1413
||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1194 TAGACAAAACTTGAGGTGGGTCCCATTTGGCACCCTCATTGCAAATGTAGCTGCAGCTTG 1253
Query 1414 CGTTATGGCAGCATTGGCTACCT-TGAAGAAATCGGTGAACACGAGAACATGTAACACGG 1472
|||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||
Sbjct 1254 CGTTATGGCAGCATTGGCCAC-TGTAAAGAAATCGGTGAACACGAGAACATGTAACACGG 1312
Query 1473 TTGCTTCGAGCATACAGTTTGGTCTGTTGGGATGTCTGAGCACAGTTTCGACCTTCATGG 1532
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1313 TTGCTTCGAGCATACAGTTTGGTCTGTTGGGATGTCTGAGCACAGTTTCCACCTTCATGG 1372
Query 1533 CTGAGTTCAATGCGATGAGAGAAAGTGATTACCCATGGAGAGCCTATGCGTATGCATCTT 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CTGAGTTCAATGCGATGAGAGAAAGTGATTACCCATGGAGAGCCTATGCGTATGCATCTT 1432
Query 1593 TTACCATTGTGGTTTCTTTTGCGATTGGAACTATTATATACTCAGTCCCTGTCTGGGTAA 1652
| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1433 TCACCATTGCAGTTTCTTTTGCGATTGGAACTGTTATATACTCAGTCCCTGTCTGGGTAG 1492
Query 1653 TAGGATTCAGTTAGTTGTATCAAAGCTAGATAAGTCTTGTGCAGATGATGTGATA-ATAC 1711
|||| ||||||||||||||||||| |||||||||||||||| ||||||||| | | ||||
Sbjct 1493 TAGGGTTCAGTTAGTTGTATCAAAACTAGATAAGTCTTGTGTAGATGATGTAA-AGATAC 1551
Query 1712 ATAGTCGTAACATTTGGTAGAGATGA 1737
||| | ||||||||||||| ||||||
Sbjct 1552 ATATTTGTAACATTTGGTAAAGATGA 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5