BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41705.1 Length=1837 Score E Sequences producing significant alignments: (Bits) Value Ahg483250 jgi|Araly1|483250|fgenesh2_kg.4__2310__AT2G41705.1 2418 0.0 > Ahg483250 jgi|Araly1|483250|fgenesh2_kg.4__2310__AT2G41705.1 Length=1639 Score = 2418 bits (1309), Expect = 0.0 Identities = 1497/1586 (94%), Gaps = 20/1586 (1%) Strand=Plus/Plus Query 163 TTAGCTCGATTTCTCCGCCGGCGACTTTTGGGATCAAATTTGATTCTTCACGATTAAGAT 222 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 TTAGCTCGATTTCTCCGCCGGCGACTTTT-GGATCAAATTTGATTCTTCACGATTAAGAT 59 Query 223 TGAATTCGCCATTAGGTGGAGCATCATTTAAG-AAT-CTTATGCTTTGGCTACAACGCCT 280 ||||||||||||||||| ||| || |||||| ||| | | || |||||| |||| |||| Sbjct 60 TGAATTCGCCATTAGGTAAAGC-TCCTTTAAGAAATAC-TGTGTTTTGGCAACAAAGCCT 117 Query 281 ATGGATACGGGTCAAAGCAGCATAG---AACCTTATC-AAGCCAAGTCTTTTAGTCGGGA 336 |||||| | ||||||||| || ||| |||| || | || ||||||||||||||||||| Sbjct 118 ATGGATTCCGGTCAAAGCCGCGTAGAACAACCCTACCGAA-CCAAGTCTTTTAGTCGGGA 176 Query 337 GAGCAGTGTAGCCTCTTCTTTAAGCTTATCACGTAGTTTGCCTCACCTAATTGACAATGA 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 GAGCAGTGTAGCCTCTTCTTTAAGCTTATCACGTAGTTTGCCTCACCTAATTGACAATGA 236 Query 397 CGTCGATAGTGAGAGTGTCTCAGAGGCAGGGGATATTGGGGACCGCTCACTTCGGAGAAG 456 ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 237 CGTCGATAGTGAGAGTGTCTCAGAGGCTGGGGATATTGGTGATCGCTCACTTCGGAGAAG 296 Query 457 GCATAGTGCTGGTAGAAGCAGCCGTTTGTCTGCTGATGATTTTATAGAACAAGGGACTCA 516 ||||||||||||| ||||||||||||||||||| |||||||| || |||||||||||||| Sbjct 297 GCATAGTGCTGGTCGAAGCAGCCGTTTGTCTGCCGATGATTTGATGGAACAAGGGACTCA 356 Query 517 TGATACTTCTCGTCAAGAACAAGATATATTACATGACCTTCGAGCTTTCAACACTGCTTC 576 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| Sbjct 357 TGATACTTCTCGTCAAGAACAAGATGTATTACATGATCTTCGAGCTTTCAACACAGCTTC 416 Query 577 CGTAAATAAAACTTTGCCTGAGGACATAACAGCATCTCCTTTACCGACCAAGTCACTCTT 636 || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 417 TGTTAATAAACCTTTGCCTGAGGATATAACAGCATCTCCTTTACCGACCAAGTCACTCTT 476 Query 637 GTCACCTGAAATAAACAACTCCGGAAA-GGAGGAAGAGCGAGTGTTACCAAAGTCCTTGG 695 ||||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||| Sbjct 477 GTCACCTGAGATAAACAAC-CCGGAAAAGGAGGAAGAGCGCGTGTTACCAAAGTCCTTGG 535 Query 696 AGTACATATCATGCCTAATTCATTTGGCTGTTTTTGGGATTTTTGGGGCCATTACGAGAT 755 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 ATTACATATCATGTCTAATTCATTTGGCTGTTTTTGGGATTTTTGGGGCCATTACGAGAT 595 Query 756 ATTTGCTGCAAAAATTGTTTGGGCCAACTGGTGCTCGAGTAACAAGTGATGGGAGCATCT 815 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 596 ATTTGCTGCAGAAATTGTTTGGACCAACTGGTGCTCGAGTAACAAGTGATGGAAGCATCT 655 Query 816 TGTACCTTGATCTTCCCTCCAACATGGTAGGATCATTCTTGATGGGTTGGTTTGGCGTTG 875 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 656 TGTACCTTGATCTTCCCTCCAACATGGTAGGATCATTCTTGATGGGTTGGTTTGGTGTCG 715 Query 876 TATTCAAAGCAGATATAGCAAGAGTTTCTGAATTTGTGGCGATAGGATTATCGACTGGTT 935 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 TATTCAAAGCAGATATAGCAAGAGTTTCTGAATTTGTGGCGATAGGATTATCGACTGGTT 775 Query 936 ATTTGGGGAGTCTGACAACATTCAGCGGTTGGAACCAGAAAATGCTGGATCTTAGTGCTG 995 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 ATTTGGGGAGCCTGACAACATTCAGCGGTTGGAACCAGAAAATGCTGGATCTTAGTGCTG 835 Query 996 ATGGTCAATGGGTGTATGCTGTGCTTGGCTTT-TTATTAGGATTGTTTCTCACGTCATAC 1054 ||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||| Sbjct 836 ATGGTCAATGGGTATATGCCCTGCTTGGCTTTCTT-TTAGGATTGTTTCTCACGTCATAC 894 Query 1055 TCCATAATTCTGGGAGTGGAAACGGCCAAAGGGTTTAAATGGCTTCTTCATAGAAGAGCT 1114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 TCCATAATTCTGGGAGTGGAAACGGCCAAAGGGTTTAAATGGCTTCTTCATAGAAGAGCT 954 Query 1115 TCTTCTGAGGATAAATTC-CATTGTCTTAAGGTTAACACCTTCCAGAGCCATATTGTGTC 1173 ||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||| Sbjct 955 TCTTCTGAGGAAAAACACTC-TTGTCTTAAGGTTAACACCTTCCAGAGCCATATTGTGTC 1013 Query 1174 TCTGACCCTGATGCTTCTGTTGCTTGTGGCTTTACTCACTGCCAGTTCCATACTGCTTGT 1233 | |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1014 TATGACCCTGATGCTTCTGTTGCTTGTGGCTTTACTCACTGCGAGTTCCATTCTGCTTGT 1073 Query 1234 GAAAGAGTTTGACAAAGGAACAAGCGAGGCTCAGCTATGGTTTGGTTGCTTAGTTGCAGC 1293 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1074 GAAAGAGTTTGACAAAGGAACAAGCGAGGCTCAACTATGGTTAGGTTGCTTAGTTGCAGC 1133 Query 1294 CCCTGGTGTCTGGCTCAGATGGTTCTTAGCCCGACTCAATGGACGTGGGCTGGGAAAGGA 1353 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1134 CCCTGGTGTCTGGCTCAGATGGTTCTTAGCCCGACTCAATGGACGTGGACTGGGAAAAGA 1193 Query 1354 TAGTCAAAATTTGAGATGGGTCCCATTTGGCACCCTCATTGCAAATGTAGTTGCAGCTTG 1413 ||| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1194 TAGACAAAACTTGAGGTGGGTCCCATTTGGCACCCTCATTGCAAATGTAGCTGCAGCTTG 1253 Query 1414 CGTTATGGCAGCATTGGCTACCT-TGAAGAAATCGGTGAACACGAGAACATGTAACACGG 1472 |||||||||||||||||| || | | |||||||||||||||||||||||||||||||||| Sbjct 1254 CGTTATGGCAGCATTGGCCAC-TGTAAAGAAATCGGTGAACACGAGAACATGTAACACGG 1312 Query 1473 TTGCTTCGAGCATACAGTTTGGTCTGTTGGGATGTCTGAGCACAGTTTCGACCTTCATGG 1532 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1313 TTGCTTCGAGCATACAGTTTGGTCTGTTGGGATGTCTGAGCACAGTTTCCACCTTCATGG 1372 Query 1533 CTGAGTTCAATGCGATGAGAGAAAGTGATTACCCATGGAGAGCCTATGCGTATGCATCTT 1592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1373 CTGAGTTCAATGCGATGAGAGAAAGTGATTACCCATGGAGAGCCTATGCGTATGCATCTT 1432 Query 1593 TTACCATTGTGGTTTCTTTTGCGATTGGAACTATTATATACTCAGTCCCTGTCTGGGTAA 1652 | ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1433 TCACCATTGCAGTTTCTTTTGCGATTGGAACTGTTATATACTCAGTCCCTGTCTGGGTAG 1492 Query 1653 TAGGATTCAGTTAGTTGTATCAAAGCTAGATAAGTCTTGTGCAGATGATGTGATA-ATAC 1711 |||| ||||||||||||||||||| |||||||||||||||| ||||||||| | | |||| Sbjct 1493 TAGGGTTCAGTTAGTTGTATCAAAACTAGATAAGTCTTGTGTAGATGATGTAA-AGATAC 1551 Query 1712 ATAGTCGTAACATTTGGTAGAGATGA 1737 ||| | ||||||||||||| |||||| Sbjct 1552 ATATTTGTAACATTTGGTAAAGATGA 1577 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68981433695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5