BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41710.3
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483251 jgi|Araly1|483251|fgenesh2_kg.4__2311__AT2G41710.2 2089 0.0
> Ahg483251 jgi|Araly1|483251|fgenesh2_kg.4__2311__AT2G41710.2
Length=1679
Score = 2089 bits (1131), Expect = 0.0
Identities = 1260/1318 (96%), Gaps = 25/1318 (2%)
Strand=Plus/Plus
Query 478 AGACATAGATGGACAGGTCGTTATGAAGCTCACCTTTGGGATAAGAGTACCTGGAACCAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AGACATAGATGGACAGGTCGTTATGAAGCTCACCTTTGGGATAAGAGTACCTGGAACCAA 427
Query 538 AACCAGAACAAGAAGGGAAAACAAGTTTATCTAGGAGCATATGATGATGAAGAGGCTGCT 597
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AATCAGAACAAGAAGGGAAAACAAGTTTATCTAGGAGCATATGATGATGAAGAGGCTGCT 487
Query 598 GCTAGAGCTTACGACCTTGCTGCCTTAAAATATTGGGGTCCTGGGACACTTATAAATTTT 657
||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 488 GCTCGAGCTTACGACCTTGCTGCCTTAAAGTATTGGGGCCCTGGGACACTTATAAATTTT 547
Query 658 CCGGTGACTGATTATACCAGGGATTTAGAAGAAATGCAAAATCTCTCAAGGGAAGAATAC 717
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CCGGTGACTGACTATACCAGGGATTTAGAAGAAATGCAAAATCTCTCAAGGGAAGAATAC 607
Query 718 CTTGC--ATCT---T---TA---C----GTAGAAAAAGCAGCGGTTTCTCTAGGGGAATA 762
||||| ||| | || | | |||||||||||||||||||| |||||||||
Sbjct 608 CTTGCGTCTCTACGTAGATATCCCTTTGGCAGAAAAAGCAGCGGTTTCTCAAGGGGAATA 667
Query 763 GCGAAATATCGTGGACTTCAAAGCCGATGGGACGCATCAGCCAGTCGTATGCCTGGACCT 822
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GCGAAATATCGGGGACTTCAAAGCCGATGGGACGCATCAGCCAGTCGTATGCCTGGACCT 727
Query 823 GAATACTTCAGTAACATTCATTACGGGGCAGGTGATGATCGTGGAACAGAAGGTGACTTT 882
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 728 GAATACTTCAGTAACATTCATTACGGGGCAGGTGATGATCGAGGAACAGAAGGTGACTTT 787
Query 883 CTAGGTAGCTTTTGTCTGGAAAGAAAGATTGATCTAACAGGATACATAAAGTGGTGGGGA 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CTAGGTAGCTTTTGTCTGGAAAGAAAGATTGATCTAACAGGATACATAAAGTGGTGGGGA 847
Query 943 GCCAACAAGAACCGTCAACCAGAATCTTCATCAAAAGCATCAGAGGATGCAAACGTCGAA 1002
| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 848 GTCAACAAGACCCGTCAACCAGAATCTTCATCAAAAGCATCAGAGGATGCAAATGTCGAA 907
Query 1003 GATGCTGGTACTGAGCTTAAAACACTGGAACACACATCCCATGCAACAGAACCATACAAG 1062
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 908 GATGCTGGTACTGAGCTTAAAACACTGGAACACACATCCCAGGCAACAGAACCATACAAG 967
Query 1063 GCGCCAAACCTTGGCGTCCTTTGTGGAACTCAGAGAAAAGAAAAAGAAATATCATCACCA 1122
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 968 GCGCCAAACCTTGGTGTCCTTCGTGGAACTCAGAGAAAAGAAAAAGAAATATCATCACCA 1027
Query 1123 TCAAGCTCTTCTGCTTTAAGCATCTTGTCTCAGTCGCCTGCCTTCAAGAGCCTAGAGGAG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TCAAGCTCTTCTGCTTTAAGCATCTTGTCTCAGTCGCCTGCCTTCAAGAGCCTAGAGGAG 1087
Query 1183 AAAGTGTTGAAGATCCAAGAAAGCTGCAATAATGAAAACGATGAGAATGCAAACCGTAAC 1242
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1088 AAAGTGCTGAAGATCCAAGAAAGCTGCAATAATGAAAACGATGAGAATGCAAATCGTAAC 1147
Query 1243 ATCATCAATATGGAGAAGAATAACGGCAAGGCAATAGAGAAACCAGTTGTGAGTCATGGA 1302
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1148 ATCATCAATATGGAGAAGAATCACGGCAAGGCAATAGAGAAACCAGTTGTGAGTCATGGA 1207
Query 1303 GTTGCTTTAGGCGGTGCTGCTGCT-TTGTCTCTTCAGAAAAGCATGTACCCACTTACCTC 1361
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1208 GTTGCTTTAGGCGGTGCTGCTG-TGTTGTCTCTTCAGAAAAGCATGTACCCACTTACCTC 1266
Query 1362 TCTCTTAACGGCTCCATTGCTCACCAACTACAATACATTGGATCCTCTTGCAGACCCTAT 1421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TCTCTTAACTGCTCCATTGCTCACCAACTACAATACATTGGATCCTCTTGCAGACCCTAT 1326
Query 1422 TCTCTGGACACCATTTCTTCCTTCAGGATCCTCTCTTACTTCAGAGGTGACAAAGACAGA 1481
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1327 TCTCTGGACACCATTTCTTCCTTCAGGATCCTCTCATACTTCAGAGGTGACAAAGACAGA 1386
Query 1482 GACCAGCTGTTCCACGTACAGCTACCTCCCACAAGAGAAATGAGCCGTTCCCTTTAGACT 1541
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1387 GACCAGCTGTTCCACGTACAGCTACATCCCACAAGAGAAATGAGCCGTTCCCTTTAGACT 1446
Query 1542 TTATGTATGTCAGATTCTCCTTTTTTGAGATGAATTCGTCGACTTGAC-ATCTCTTT--G 1598
||||||||||||||||||||||| ||||||||||| |||||||| || |||| ||| |
Sbjct 1447 TTATGTATGTCAGATTCTCCTTTGGTGAGATGAATTTGTCGACTT-ACCATCTGTTTTTG 1505
Query 1599 TCTCTTTTATGGAGAAAAAGTTGGGAAAAGTGTGACAATGGTCTGAAGCAGGAATGTACA 1658
||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1506 TCTCTTT-ATGGAGAGGAAGTTGGGAGAAGTGTGACAATGGTCTGAAGCAGGAATGTACA 1564
Query 1659 GGTTTTGTTAGTGGTTGTGtttttttttttCCAGTGTGGAATATAGAATCATGATATTTT 1718
||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||
Sbjct 1565 GGTTTTGTTAGTGGTTGTGTTTTTTTTTT-C-AGTGTGGAATATAGAATCATCATAATTT 1622
Query 1719 GTGTAAAACAGAAAAAAGTTATCATTATAGTATAGAAGTTTGCTCTTAATATTTCTGC 1776
|||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1623 GTGTAAAACAGAAAAA-GTTATCATTATAGTATAAAAGTTTGCTCTTAATACTTCTGC 1679
Score = 540 bits (292), Expect = 1e-152
Identities = 350/375 (93%), Gaps = 15/375 (4%)
Strand=Plus/Plus
Query 9 AAAAAGGAAAGAGTCAAAGTTGAAttttctcagctctcactctctttttctctctctttA 68
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AAAAA-GAAAGAGTCAAAGTTGAATTTTCTCAGCTCTCACTCTCTTTCTCTCTCTCTTTG 59
Query 69 CTTCTACTGTATCAAGAAGCTCCGTTTTGCTTAGCCATAGTGCGTCTAGGGTTTGGTTGG 128
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 60 CTTCTACTGTATC---AAGCTCGGTTTTGCGTAGCCATAGTGCGTCTAGGGTTTGGTTGG 116
Query 129 TGGGAAGAAGGTTCCGATCATGGCGTCGGTGTCGTCGTCGGATCAAGGACCTAAGACAGA 188
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 -GGG-AGAAGGTTCCGATCATGGCGTCGGTGTCGTCGTCGGATCAAGGACCTAAGACAGA 174
Query 189 AGCAGGATGTAGCGGCGGAGGAGGAGGAG-AG-AGC------T-CGGAGACAGTGGCGGC 239
||||||||||||||||||||||||||||| || || | | ||||||||||||||
Sbjct 175 AGCAGGATGTAGCGGCGGAGGAGGAGGAGGAGGAGGAGAGAGTTCAGAGACAGTGGCGGC 234
Query 240 GAGTGATCAGATGTTGTTGTATAGAGGTTTTAAGAAGGCGAAGAAGGAGAGAGGTTGTAC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GAGTGATCAGATGTTGTTGTATAGAGGTTTTAAGAAGGCGAAGAAGGAGAGAGGTTGTAC 294
Query 300 AGCTAAGGAGCGTATTAGTAAAATGCCTCCGTGCACTGCTGGGAAAAGGAGTTCCATATA 359
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 295 AGCTAAAGAGCGTATTAGTAAAATGCCGCCGTGTACTGCTGGGAAAAGGAGTTCCATATA 354
Query 360 CCGGGGAGTCACCAG 374
||| |||||||||||
Sbjct 355 CCGCGGAGTCACCAG 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66657928750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5