BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41740.1 Length=3541 Score E Sequences producing significant alignments: (Bits) Value Ahg483257 jgi|Araly1|483257|fgenesh2_kg.4__2317__AT2G41740.1 3277 0.0 Ahg486186 jgi|Araly1|486186|fgenesh2_kg.5__2178__AT3G57410.1 2750 0.0 Ahg891525 jgi|Araly1|891525|Al_scaffold_0007_3511 464 2e-129 Ahg900551 jgi|Araly1|900551|Al_scaffold_0004_1201 220 4e-56 Ahg907699 jgi|Araly1|907699|Al_scaffold_0002_780 156 1e-36 > Ahg483257 jgi|Araly1|483257|fgenesh2_kg.4__2317__AT2G41740.1 Length=3600 Score = 3277 bits (1774), Expect = 0.0 Identities = 2009/2120 (95%), Gaps = 26/2120 (1%) Strand=Plus/Plus Query 155 aaaaaCACAGCTCACAACCtcttttcaattattcaatttagc-tttttttctc-tt-c-t 210 ||||| |||||||||||||||||||||||||||||| ||||| ||||||| || || | | Sbjct 87 AAAAAGACAGCTCACAACCTCTTTTCAATTATTCAA-TTAGCTTTTTTTTTTCTTTCCTT 145 Query 211 -tcttcttcatcttccctcgtcttctttgccag---ttcttcttcatctttcgtcgtttt 266 |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 146 CTCTTCTTCATCTTCCCTCGTCTTCTTTGCCAGTTCTTCTTCTTCACCTTTCGTCGTTTT 205 Query 267 cttAGTGCCACCCAAAGATCTTCGTGCAGGTTCATTGGCGTTTGTAGTACATAAATTTTC 326 |||||||||||||||||||||| |||||||||||||||||| | |||| |||||||||| Sbjct 206 CTTAGTGCCACCCAAAGATCTTGGTGCAGGTTCATTGGCGTCTCTAGTGTATAAATTTTC 265 Query 327 -C-CTGACACAC------AGAAAAAGAGGATTTGACTGTTATAC--AATGTCAACAAAAG 376 | | |||||| | ||||| |||||||||||||||||| |||||| || |||| Sbjct 266 ACTCACACACACAAAAAAAAAAAAAAAGGATTTGACTGTTATACAAAATGTCTACCAAAG 325 Query 377 TGTTGGATCCTGCATTTCAAGGAGCTGGCCAGAAACCAGGGACTGAAATCTGGAGAATTG 436 || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 326 TGCTGGATCCTGCATTTCAAGGAGCTGGTCAGAAACCAGGGACTGAAATCTGGAGAATCG 385 Query 437 AGAATTTTGAGGCAGTTCCTGTACCAAAGTCTGAGCATGGAAAGTTCTATATGGGAGATA 496 ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 386 AGAATTTCGAGGTAGTTCCAGTACCAAAGTCTGAGCATGGAAAGTTCTATATGGGAGATA 445 Query 497 CTTACATTGTCTTGCAGACAACACAGAATAAAGGGGGTGCTTATTTGTTTGATATACATT 556 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 446 CTTACATTGTCTTGCAGACAACACAGAATAAGGGGGGTGCTTATTTGTTTGATATACATT 505 Query 557 TCTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTGTTAAAACAGTTG 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 506 TCTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTGTTAAAACAGTGG 565 Query 617 AACTCGATGCAGTTCTTGGAGGCCGTGCTGTCCAACACCGGGAAATTCAGGGTCATGAAT 676 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 566 AACTCGATGCAGTTCTTGGAGGCCGTGCTATCCAACACCGGGAACTTCAGGGTCATGAAT 625 Query 677 CTGACAAATTCTTGTCTTACTTCAAGCCATGTATTATACC-CTTAGAGGGTGGTGTTGCG 735 ||||||| |||||||||||||||||||||||||| || || | ||||||||||||||||| Sbjct 626 CTGACAAGTTCTTGTCTTACTTCAAGCCATGTATAATTCCGC-TAGAGGGTGGTGTTGCG 684 Query 736 TCTGGTTTCAAAACAGTTGAAGAAGAGGTGTTTGAGACCCGGTTATATACTTGCAAAGGA 795 ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| Sbjct 685 TCTGGTTTCAAAACACCTGAAGAACAAGTGTTTGAGACCCGGTTATATACTTGCAAAGGA 744 Query 796 AAACGTGCAATCCGTTTGAAGCAGGTTCCTTTTGCCCGCTCATCACTGAATCATGATGAT 855 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 745 AAACGTGCTATTCGTTTGAAGCAGGTTCCTTTTGCCCGCTCATCACTGAATCATGATGAT 804 Query 856 GTATTTATCTTGGACACCGAGGAAAAGATCTATCAGTTCAATGGTGCAAATTCAAACATT 915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 GTATTTATCTTGGACACCGAGGAAAAGATCTATCAGTTCAATGGTGCAAATTCAAACATT 864 Query 916 CAGGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTAAAAGACAAGTATCACGAAGGA 975 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 865 CAGGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTAAAAGACAAGTATCATGAAGGA 924 Query 976 ACTTGTGATGTTGCGATTGTTGATGACGGAAAATTAGATACAGAATCAGATTCTGGTGCA 1035 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 925 ACTTGTGATGTTGCGATTGTTGATGATGGGAAATTAGATACAGAATCAGATTCTGGTGCA 984 Query 1036 TTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATCGGAAGGAAAGTTGCCAATGATGATGAC 1095 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 985 TTTTGGGTCCTCTTTGGTGGTTTTGCTCCTATCGGAAGGAAAGTTGCCAATGATGATGAC 1044 Query 1096 ATTGTCCCGGAGTCAACTCCACCTAAGCTTTATTGCATCACTGATGGTAAGATGGAACCA 1155 ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 1045 ATTATCCCGGAGTCAACTCCACCTAAGCTTTATTGCACCACTGATGGTAAGATAGAACCT 1104 Query 1156 ATAGACGGTGACCTATCCAAATCTATGCTGGAAAACACTAAATGCTACCTCTTGGACTGT 1215 || |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1105 ATTGACGGTGATTTATCCAAATCTATGCTGGAAAACACCAAATGTTACCTCTTGGACTGT 1164 Query 1216 GGCGCTGAGATATATATCTGGGTTGGCCGTGTCACTCAAGTAGATGAGAGGAAAGCTGCT 1275 || |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1165 GGTGCTGAGGTATTTATCTGGGTTGGCCGTGTCACTCAAGTGGATGAGAGGAAAGCTGCT 1224 Query 1276 AGTCAAT-CTGCTGAGGAATTCCTTGCTAGTGAAAATAGGCCAAAGGCAACACATGTAAC 1334 ||| ||| |||||||||||||||||||||||||||||||||||| ||||||| || || Sbjct 1225 AGT-AATTCTGCTGAGGAATTCCTTGCTAGTGAAAATAGGCCAATTGCAACACGCGTTAC 1283 Query 1335 TCGTGTAATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGCCATC 1394 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1284 TCGTGTTATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGCCATC 1343 Query 1395 AGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGCTGCTTTACTGAAGCA 1454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1344 AGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGCTGCTTTACTGAAGCA 1403 Query 1455 ACAAGGCGTTGGGCTCAAGGGCATTGCAAAAAGTGCACCAGTGAATGAGGATATTCCACC 1514 |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1404 ACAAGGTGTTGGGCTCAAGGGTATTGCGAAAAGTGCACCAGTGAATGAGGATATTCCACC 1463 Query 1515 TCTGCTTGAAAGTGGTGGAAAATTGGAGGTTTGGTACGTTAATGGTAAAGTCAAGACTCC 1574 |||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 1464 TCTGCTTGAAGGTGGTGGAAAGTTGGAGGTTTGGTACGTTAATGGTAAAGCCAAGACTCT 1523 Query 1575 CTTACCTAAAGAAGATATTGGAAAGCTCTATTCTGGGGACTGCTATTTGGTCCTTTATAC 1634 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1524 GTTACCTAAAGAAGATATTGGCAAGCTCTATTCTGGGGACTGCTATTTGGTCCTTTATAC 1583 Query 1635 CTATCATTCTGGGGAAAGGAAAGACGAATATTTCTTGAGTTGTTGGTTTGGAAAGAAAAG 1694 ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1584 CTATCATTCTGGGGAGAGGAAAGACGAATATTTCTTGTGTTGTTGGTTTGGAAAGAAAAG 1643 Query 1695 CATTCCGGAGGACCAAGATACAGCAATTCGACTGGCGAATACAATGTCAAACTCGTTAAA 1754 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1644 CATTCAGGAGGACCAAGATACAGCAATTCGACTGGCGAATACAATGTCAAACTCTTTAAA 1703 Query 1755 AGGAAGACCTGTGCAGGGCCGTATATACGAGGGTAAAGAGCCTCCACAATTTGTTGCCCT 1814 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1704 AGGAAGACCTGTGCAGGGGCGTATATACGAGGGTAAAGAGCCTCCACAATTTGTTGCCCT 1763 Query 1815 TTTTCAACCTATGGTGGTCTTAAAGGGTGGTTTGAGCTCTGGGTACAAAAGCAGTATGGG 1874 ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| Sbjct 1764 TTTTCAACCTATGGTGGTCCTAAAGGGTGGTTTGAGCTCTGGGTACAAAAACAGTGTGGG 1823 Query 1875 AGAGTCAGAGTCAACAGACGAAACCTACACGCCAGAATCAATTGCACTAGTTCAAGTATC 1934 |||| | ||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 1824 AGAGG--G-GTCAACAGATGAAACCTACACGCCAGAATCAATTGCACTAATTCAAGTATC 1880 Query 1935 TGGAACCGGAGTTCACAATAATAAGGCTGTGCAAGTTGAAACGGTGGCAACATCTTTGAA 1994 ||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| Sbjct 1881 TGGAACCGGAGTTCACAATTATAAAGCTGTGCAAGTTGAATTGGTGGCAACATCTTTGAA 1940 Query 1995 CTCTTATGAGTGCTTCCTTCTGCAATCTGGTACTTCCATGTTCCTTTGGCATGGAAATCA 2054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1941 CTCTTATGAGTGCTTCCTTCTGCAATCTGGTACTTCCATGTTCCTTTGGCATGGAAATCA 2000 Query 2055 AAGTACGCATGAACAGCTAGAACTGGCCACTAAAGTTGCTGAATTCTTGAAGCCCGGGAT 2114 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2001 AAGTACGCATGAACAGCTAGAACTGGCCACTAAAGTTGCTGAATTCTTGAAGCCTGGGAG 2060 Query 2115 TACTCTCAAGCATGCCAAAGAAGGAACAGAGAGCTCAACCTTTTGGTTTGCACTTGGGGG 2174 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2061 TACTCTCAAGCATGCCAAAGAAGGAACGGAGAGCTCAACCTTTTGGTTTGCACTTGGGGG 2120 Query 2175 AAAACAGAATTTCACCAGCAAGAAGGCTTCCTCTGAGACGATCAGGGATCCTCACTTATT 2234 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2121 AAAACAGAATTTCACCAGCAAGAAGGCTTCCTCTGAGACTATCAGGGATCCTCACTTATT 2180 Query 2235 CTCATTTGCTTTCAACAGAG 2254 ||||||| |||||||||||| Sbjct 2181 CTCATTTTCTTTCAACAGAG 2200 Score = 2109 bits (1142), Expect = 0.0 Identities = 1234/1279 (96%), Gaps = 4/1279 (0%) Strand=Plus/Plus Query 2266 GTTGAGGAGATTTACAACTTTGCTCAAGATGACCTCTTGACTGAGGATATATATTTCCTA 2325 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 2323 GTTGAGGAGATTTACAACTTCGCTCAAGATGACCTCTTGACTGAGGATATATATTTACTA 2382 Query 2326 GACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCTAAGGAAAAGCAA 2385 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2383 GACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCCAAGGAAAAGCAA 2442 Query 2386 ACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAAGGCTTGCAT 2445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2443 ACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAAGGCTTGCAT 2502 Query 2446 CCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACTTAC 2505 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2503 CCTAAAGTCCCACTCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACGTAC 2562 Query 2506 TTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAATTCATTCCAGAAAAAGGCATCG 2565 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 2563 TTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAACTCATTCCAGAAAAAGGCAGCG 2622 Query 2566 TTGTTATTTGGCACTCACCACGTTGTGGAGGATAAGTCTAACGGTGGGAACCAAGGACTA 2625 |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2623 TTGTTACTTGGCACTCACCACGTTGTGGAGGATAAGTCTAACGGTGGTAACCAAGGACTA 2682 Query 2626 AGGCAAAGGGCTGAAGCACTAGCTGCCTTAAATTCGGCATTTAACTCTTCTAGTAACAGG 2685 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || Sbjct 2683 AGGCAAAGGGCTGAAGCACTAGCTGCCTTAAATTCTGCATTTAATTCTTCTAGTAACCGG 2742 Query 2686 CCTGCCTATTCGAGCCAGGACAGATTAAACGAAAGTCACGACGGCCCAAGACAGAGAGCT 2745 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2743 CCTGCCTACTCGAGCCAGGACAGATCAAACGAAAGTCACGACGGCCCAAGACAGAGAGCT 2802 Query 2746 GAAGCTTTAGCCGCCTTGTCATCCGCATTCAACTCTTCTTCGTCATCAACTAAATCGCCT 2805 ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2803 GAAGCTTTAGCAGCATTGTCATCCGCATTCAATTCTTCTTCGTCATCAACTAAATCGCCT 2862 Query 2806 CCACCACCAAGGCCAGTGGGGACGAGTCAGGCTTCACAGAGAGCAGCAGCAGTGGCTGCT 2865 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2863 CCACCACCAAGGCCAGTGGGGACGAGTCAGGCTTCACAGAGAGCAGCAGCAGTGGCTGCT 2922 Query 2866 CTTTCTCAAGTTCTTGTTGCGGAAAATAAGAAATCACCTGATACCTCTCCTACAAGAAGA 2925 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2923 CTCTCTCAAGTTCTTGTTGCGGAGAATAAGAAATCACCTGATACCTCTCCTACAAGAAGA 2982 Query 2926 TCCACTAGCTCCAACCCAGCAGATGACATCCCTCTGACGGAAGCAAAAGATGAAGAAGAG 2985 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 2983 TCCACTAGCTCCAACCCAGCAGATGACACCCCTCTAACGGAAGCAAAAGATGAAGAAGAG 3042 Query 2986 GCTTCAGAGGTAGCTGGTCTTGAAGCCAAGGAAGAAGAGGAAGTTTCACCTGCAGCAGAT 3045 |||||||| |||||||||| |||||||||||||||||||||||| ||||||||| ||||| Sbjct 3043 GCTTCAGAAGTAGCTGGTCATGAAGCCAAGGAAGAAGAGGAAGTCTCACCTGCAACAGAT 3102 Query 3046 GAAACAGAAGCAAAGCAGGAAACAGAAGAGCAAGGTGATTCTGAAATACAACCAAGTGGA 3105 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 3103 GAAACAGAAGCAAAGGAGGAAACAGAAGAGCAAGGTGATTCTGAAATAGAACCAAGTGGA 3162 Query 3106 GCAACTTTCACCTATGAACAGCTGAGAGCTAAATCTGAGAACCCAGTGACTGGAATCGAT 3165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3163 GCAACTTTCACCTATGAACAGCTGAGAGCTAAATCTGAGAACCCAGTGACTGGAATCGAT 3222 Query 3166 TTCAAACGCAGAGAGGCTTATCTATCTGAGGAAGAGTTCCAAAGTGTGTTTGGGATCGAG 3225 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 3223 TTCAAACGCAGAGAGGCTTATCTATCGGAGGAAGAGTTCCAAAGTGTGTTTGGGATGGAG 3282 Query 3226 AAAGAAGCATTCAACAACTTACCACGTTGGAAGCAAGATCTGCTTAAGAAGAAGTTCGAC 3285 |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct 3283 AAAGAAGCATTCAACAACTTACCACGTTGGAAACAAGATCTGCTTAAGAAGAAATTGGAC 3342 Query 3286 TTGTTCTAG-TTTGGTTTTATGTGGGTCAGTCAATTTGTTGTTGGTTTGAAGAGTGTGtt 3344 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 3343 TTGTTCTAGCTTTGGTTTTATGTGGGTCAGTCAATTTGTTGTTGGTTTGAAGAATGTATT 3402 Query 3345 tttttGTTTCTCTTCTTCAATTTTATTTACTTGGCTCATTTATATTTCTCTCATGGGTTG 3404 |||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3403 TTTT-GTTTCTTTTCTTCAGTTTTATTTACTTGGCTCATTTATATTTCTCTCATGGGTTG 3461 Query 3405 GTTTGGGTTTGATTCTTTATATTTTCTGACAGCACAATGAGGTTTCTTGTAATGATGATG 3464 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3462 GTTTGGGTTTGATTCTTTATATTTTCTGACAGCACAATGAGGTTTCTGGTAATGATGATG 3521 Query 3465 ATCATAGATTGTAATGAATGTTTTACCCGAGACAGATTTGTGA--GTGGGTAGCAAAATT 3522 ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| Sbjct 3522 ATCATAGATTGTAATGATTGTTTTACCCGAGACAGATTTGTGATTGTGGGCAGCAAAATT 3581 Query 3523 CTTTGATTTGTGATCTTCC 3541 || ||||| |||||||||| Sbjct 3582 CTCTGATTAGTGATCTTCC 3600 > Ahg486186 jgi|Araly1|486186|fgenesh2_kg.5__2178__AT3G57410.1 Length=3196 Score = 2750 bits (1489), Expect = 0.0 Identities = 2220/2571 (86%), Gaps = 58/2571 (2%) Strand=Plus/Plus Query 366 GTCAACAAAAGTGTTGGATCCTGCATTTCAAGGAGCT-GGCCAGAAACCAGGGACTGAAA 424 |||| ||||||| ||||||||||| |||||||||| | || ||||||||||| ||||||| Sbjct 190 GTCAGCAAAAGTATTGGATCCTGCGTTTCAAGGAG-TCGGGCAGAAACCAGGTACTGAAA 248 Query 425 TCTGGAGAATTGAGAATTTTGAGGCAGTTCCTGTACCAAAGTCTGAGCATGGAAAGTTCT 484 ||||||||||||| ||||||||| |||| || ||||| |||||||| ||||||||||||| Sbjct 249 TCTGGAGAATTGAAAATTTTGAGCCAGTCCCAGTACCGAAGTCTGAACATGGAAAGTTCT 308 Query 485 ATATGGGAGATACTTACATTGTCTTGCAGACAACACAGAATAAAGGGGGTGCTTATTTGT 544 ||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| | | Sbjct 309 ATATGGGAGATACTTACATTGTCTTGCAGTCCACACAGAATAAGGGGGGTGCTTATCTAT 368 Query 545 TTGATATACATTTCTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTG 604 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 TTGATATACATTTTTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTG 428 Query 605 TTAAAACAGTTGAACTCGATGCAGTTCTTGGAGGCCGTGCTGTCCAACACCGGGAAATTC 664 | || ||||||||||| ||||||| |||||||||||| ||||||||| |||| ||||||| Sbjct 429 TCAAGACAGTTGAACTTGATGCAGCTCTTGGAGGCCGAGCTGTCCAATACCGTGAAATTC 488 Query 665 AGGGTCATGAATCTGACAAATTCTTGTCTTACTTCAAGCCATGTATTATACC-CTTAGAG 723 | |||||||||||||| ||||||||||||||||||||||| || |||||||| || |||| Sbjct 489 AAGGTCATGAATCTGATAAATTCTTGTCTTACTTCAAGCCTTGCATTATACCACT-AGAG 547 Query 724 GGTGGTGTTGCGTCTGG-TTTC-AAAACAGTTGAAGAAGAGGTGTTTGAGACCCGGTTAT 781 ||||||||||||||||| ||| ||||| || || |||| |||||| |||||| | | Sbjct 548 GGTGGTGTTGCGTCTGGATTTAGAAAACCC--GAGGAGGAGGAGTTTGAAACCCGGCTGT 605 Query 782 ATACTTGCAAAGGAAAACGTGCAATCCGTTTGAAGCAGGTTCCTTTTGCCCGCTCATCAC 841 |||| |||||||| |||||||| ||| |||||||||||||||||||| |||||||||| Sbjct 606 ATACCTGCAAAGGGAAACGTGCTGTCCACTTGAAGCAGGTTCCTTTTGCACGCTCATCAC 665 Query 842 TGAATCATGATGATGTATTTATCTTGGACACCGAGGAAAAGATCTATCAGTTCAATGGTG 901 |||||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||| | Sbjct 666 TGAATCATGATGATGTGTTTATCTTGGACACCAAGGAAAAGATTTATCAGTTTAATGGGG 725 Query 902 CAAATTCAAACATTCAGGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTAAAAGACA 961 |||||||||| || || |||||||| ||||| |||| ||||||||| ||||| ||||||| Sbjct 726 CAAATTCAAATATCCAAGAGAGAGCTAAAGCGTTGGTAGTCGTTCAATATTTGAAAGACA 785 Query 962 AGTATCACGAAGGAACTTGTGATGTTGCGATTGTTGATGACGGAAAATTAGATACAGAAT 1021 ||| ||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct 786 AGTTTCATGAAGGAACTTGTGACGTTGCTATTGTTGATGATGGAAAATTAGATACAGAAT 845 Query 1022 CAGATTCTGGTGCA-TTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATCGGAAGGAAAGTT 1080 |||||||||| | | ||||||||||||||||| |||||||||||||| | | |||||||| Sbjct 846 CAGATTCTGGCG-AGTTTTGGGTCCTCTTTGGGGGTTTTGCTCCAATAGCACGGAAAGTT 904 Query 1081 GCCAATGATGATGACATTGTCCCGGAGTCAACTCCACCTAAGCTTTATTGCATCACTGAT 1140 || | ||| ||||| ||| | |||||| ||||||| |||||||||||| | ||| ||||| Sbjct 905 GCTAGTGAGGATGAAATTATTCCGGAGACAACTCCGCCTAAGCTTTATAGTATCGCTGAT 964 Query 1141 GGTAAGATGGAACCAATAGACGGTGACCTATCCAAATCTATGCTGGAAAACACTAAATGC 1200 ||| | ||||| | |||||||| || ||||||||||||||||||||||| ||||||| Sbjct 965 GGTCTGGTGGAATCGATAGACGGCGATTTATCCAAATCTATGCTGGAAAACGGTAAATGC 1024 Query 1201 TACCTCTTGGACTGTGGCGCTGAGATATATATCTGGGTTGGCCGTGTCACTCAAGTAGAT 1260 ||||| |||||||| || ||||| ||| ||||||||||||||| || |||||||| || Sbjct 1025 TACCTTTTGGACTGCGGTTCTGAGGTATTTATCTGGGTTGGCCGAGTAACTCAAGTGGAA 1084 Query 1261 GAGAGGAAAGCTGCTAGTC-AATCTGCTGAGGAATTCCTTGCTAGTGAAAATAGGCCAAA 1319 ||||||||| |||||| || || |||||||||| || |||||||||||||||||||||| Sbjct 1085 GAGAGGAAAACTGCTA-TCCAAGCTGCTGAGGATTTTGTTGCTAGTGAAAATAGGCCAAA 1143 Query 1320 GGCAACACATGTAACTCGTGTAATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTT 1379 |||||||| |||| ||||| || |||||||||||| |||||||||||||||||||||| Sbjct 1144 GGCAACACGCATAACCCGTGTTATTCAAGGTTATGAGCCCCATTCTTTCAAGTCTAACTT 1203 Query 1380 TGACTCTTGGCCATCAGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGC 1439 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1204 TGACTCTTGGCCATCAGGCTCGGCAACTCCTGCTAACGAAGAAGGACGAGGAAAAGTCGC 1263 Query 1440 TGCTTTACTGAAGCAACAAGGCGTTGGGCTCAAGGGCAT-TGCAAAAAGTGCACCAGTGA 1498 ||| ||||| ||||||||||| |||||| | |||||| | | ||||||| ||||||||| Sbjct 1264 TGCATTACTTAAGCAACAAGGTGTTGGGTTAAAGGGCCTGT-CAAAAAGCACACCAGTGA 1322 Query 1499 ATGAGGATATTCCACC-TCTGCTTGAAAGTGGTGGAAAATTGGAGGTTTGGTACGTTAAT 1557 |||| ||||||||||| | |||||||| | |||||||| ||||||||||||||| || || Sbjct 1323 ATGAAGATATTCCACCAT-TGCTTGAAGGAGGTGGAAAGTTGGAGGTTTGGTACATTGAT 1381 Query 1558 GGTAAAGTC-AAGACTCC-CT-TACCTAAAGAAGATATTGGAAAGCTCTATTCTGGGGAC 1614 || || || |||||||| || | || ||||| ||| | ||||| |||||||||||||| Sbjct 1382 GGCAAC-TCGAAGACTCCTCTAT-CC-AAAGATGATGTCGGAAAACTCTATTCTGGGGAT 1438 Query 1615 TGCTATTTGGTCCTTTATACCTATCATTCTGGGGAAAGGAAAGACGAATATTTCTTGAGT 1674 ||||||||||||||||||||||| |||||||| ||||||||||| || || |||||| | Sbjct 1439 TGCTATTTGGTCCTTTATACCTACCATTCTGGTGAAAGGAAAGAAGACTACTTCTTGTGC 1498 Query 1675 TGTTGGTTTGGAAAGAAAAGCATTCCGGAGGACCAAGATACAGCAATTCGACTGGCGAAT 1734 ||||||||||||||||| || | || |||||| ||||| |||||| |||| || |||| Sbjct 1499 TGTTGGTTTGGAAAGAATAGTAATCAGGAGGATCAAGAAACAGCAGTTCGTCTAGCGAGC 1558 Query 1735 ACAATGTCAAACTCGTTAAAAGGAAGACCTGTGCAGGGCCGTATATACGAGGGTAAAGAG 1794 |||||| |||| ||||| || |||||||| ||||||| |||||||| |||||||||||| Sbjct 1559 ACAATGACAAATTCGTTGAAGGGAAGACCAGTGCAGGCCCGTATATTTGAGGGTAAAGAG 1618 Query 1795 CCTCCACAATTTGTTGCCCTTTTTCAACCTATGGTGGTC-TTAAAGGGTGGTTTGAGCTC 1853 ||||||||||||||||| |||||||||| |||||| ||| |||| ||||||||||||||| Sbjct 1619 CCTCCACAATTTGTTGCACTTTTTCAACATATGGTTGTCCTTAA-GGGTGGTTTGAGCTC 1677 Query 1854 TGGGTACAAAAGCAGTATGGGAGAGTCAGAGT-CAACAGACGAAACCTACACGCCAGAAT 1912 ||| ||||||| || ||| |||| || || || |||||||||||||||| || |||| Sbjct 1678 TGGTTACAAAAATAGCATGACAGAGAAAG-GTTCATCAGACGAAACCTACACACCCGAAT 1736 Query 1913 CAATTGCACT-AGTTCAAGTATCTGGAACCGGAGTTCACAATAATAAGGCTGTGCAAGTT 1971 |||||||||| | |||||||||||||||| |||||||||||||||||||| | |||||| Sbjct 1737 CAATTGCACTTA-TTCAAGTATCTGGAACTGGAGTTCACAATAATAAGGCACTACAAGTT 1795 Query 1972 GAAACGGTGGCAACATCTTTGAACTCTTATGAGTGCTTCCTTCTGCAATCTGGTACTTCC 2031 ||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1796 GAAGCTGTGGCAACTTCTTTGAACTCTTATGACTGCTTCCTTCTGCAATCTGGTACTTCC 1855 Query 2032 ATGTTCCTTTGGCATGGAAATCAAAGTACGCATGAACAGCTAGAACTGGCCACTAAAGTT 2091 |||||||||||| |||||| || ||||||||||| |||| ||||||||| |||||||| Sbjct 1856 ATGTTCCTTTGGGTTGGAAACCATAGTACGCATGAGCAGCAAGAACTGGCTGCTAAAGTT 1915 Query 2092 GCTGAATTCTTGAAGCCCGGGATTACTCTCAAGCATGCCAAAGAAGGAACAGAGAGCTCA 2151 ||||||||||| ||||| ||||||||| ||||||| || ||||| || ||||||||||| Sbjct 1916 GCTGAATTCTTAAAGCCTGGGATTACTATCAAGCACGCAAAAGAGGGGACAGAGAGCTCG 1975 Query 2152 ACCTTTTGGTTTGCACTTGGGGGAAAACAGAATTTCACCAGCAAGAAGGCTTCCTCTGAG 2211 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1976 TCCTTTTGGTTTGCACTTGGGGGAAAACAGAACTTCACCAGCAAGAAGGTTTCCTCTGAG 2035 Query 2212 AC-GATCAGGGATCCTCACTTATTCTCATT-TGCTTTCAACAGAGGAAAGTTTCAGGTTG 2269 || | |||||||||||||||| ||||| || | ||| ||||||||||||||||||||||| Sbjct 2036 ACTG-TCAGGGATCCTCACTTGTTCTCCTTCTCCTT-CAACAGAGGAAAGTTTCAGGTTG 2093 Query 2270 AGGAGATTTACAACTTTGCTCAAGATGACCTCTTGACTGAGGATATATATTTCCTAGACA 2329 | |||||| ||||||||| |||||||||||||||||| ||||| || |||| ||||| | Sbjct 2094 AAGAGATTCACAACTTTGATCAAGATGACCTCTTGACGGAGGAAATGCATTTACTAGATA 2153 Query 2330 CCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCTAAGGAAAAGCAAACTG 2389 | |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| Sbjct 2154 CTCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGACCCCAAGGAAAAACAAACTG 2213 Query 2390 TATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAAGGCTTG-CATCCT 2448 |||||||||||||||| ||||||| |||| ||||| ||| ||||||||||| | ||| Sbjct 2214 CCTTTGAGATTGGCCAAAGATACATAAATCTGGCTGGTTCCCTGGAAGGCTTGTC-TCCA 2272 Query 2449 AAAGTCCCAATCTACAAAATCAATGAAGGGAAC-GAACCATGCTTCTTCACCACTTACTT 2507 ||||| ||| | |||||||||| ||| ||||| ||||||||||||||||||||||| || Sbjct 2273 AAAGTTCCATTATACAAAATCACTGA-GGGAAATGAACCATGCTTCTTCACCACTTATTT 2331 Query 2508 TTCTTGGGATGCC-ACTAAAGCTA-TCGTACAAGGAAATTCATTCCAGAAA-AAGGCATC 2564 ||| |||||| || |||||||||| | || ||||| ||||| ||||| ||| |||||| | Sbjct 2332 TTCATGGGAT-CCTACTAAAGCTACT-GTGCAAGGGAATTCCTTCCA-AAAGAAGGCAGC 2388 Query 2565 GTTGTTATTTGGCACTCACCACGTTGTGGAGGATAAGTCTAA-CGGTGGGAACCAAGGAC 2623 || ||| |||| || |||||||||||||||||| |||| || | ||||||||||||| | Sbjct 2389 ATTATTACTTGGTACACACCACGTTGTGGAGGATCAGTC-AAGCAGTGGGAACCAAGGGC 2447 Query 2624 TAAGGCAAAGGGCTGAAGCACTAGCTGCCTTAAATTCGGCATTTAACTCTTCTAGTAACA 2683 |||||||||||||| || |||||||||| | ||| |||||||| |||||| | | Sbjct 2448 CAAGGCAAAGGGCTGCTGCTTTAGCTGCCTTGACTTCTGCATTTAATTCTTCTTCTGGGA 2507 Query 2684 GGCCT-GCCTATTCGAGCC-AGGACAGATTAAACGAAAGTCACG-ACGGCCCAAGACAGA 2740 | | | | | |||||| || |||||| ||| | |||||| | | || |||||||| | Sbjct 2508 GAACAAGT-TCTCCGAGCCGAG-ACAGATCAAATGGAAGTCAAGGA-GGTCCAAGACAAA 2564 Query 2741 GAGCTGAAGCTTTAGCCGCCTTGTCATCCGCATTCAACTCTTCTTCGTCATCAACTAAAT 2800 | |||||||||||||||||||| ||||||||||||| ||||| | ||||||| | | Sbjct 2565 GGGCTGAAGCTTTAGCCGCCTTAACATCCGCATTCAATTCTTCACCATCATCAA--AG-T 2621 Query 2801 CGCCTCCACCACCAAGGCCAGTGGG-GACGAGTCAGGCTTCACAGAGAGCAGCAGCAGTG 2859 | ||||| || ||| |||| | ||| |||||||| ||||| ||||||||||||||| Sbjct 2622 CACCTCC-CCG--AAGACCAG-GATTGACAAGTCAGGCGTCACAAAGAGCAGCAGCAGTG 2677 Query 2860 GCTGCTCTTTCTCAAGTTCTTGTTGCGGAAAATAAGAAATCACCTGATACC 2910 |||||||| || |||||||| ||| || || |||||||||||||||||| Sbjct 2678 GCTGCTCTCTCCCAAGTTCTCACTGCTGAGAAGAAGAAATCACCTGATACC 2728 > Ahg891525 jgi|Araly1|891525|Al_scaffold_0007_3511 Length=387 Score = 464 bits (251), Expect = 2e-129 Identities = 311/339 (92%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 2263 CAGGTTGAGGAGATTTACAACTTTGCTCAAGATGACCTCTTGACTGAGG----ATATATA 2318 |||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||| Sbjct 13 CAGGTTGAGGAGATTTACAACTTTTCGCAAGATGACCTCTTAACTGAGGATATATATATA 72 Query 2319 T-T-TCCTAGACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCTAAG 2376 | | | |||||||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 73 TATATACTAGACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTTTGGATCCCAAG 132 Query 2377 GAAAAGCAAACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAA 2436 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 133 GAAAAGCAAACTGTATTTGAGATTGGCCGAGAATACATAGATCTTGCTGGATCCTTGGAA 192 Query 2437 GGCTTG-CATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTT 2495 |||||| | |||||| || ||| |||||||||| |||||||||||||| ||||||||||| Sbjct 193 GGCTTGTC-TCCTAATGTTCCACTCTACAAAATGAATGAAGGGAACGAGCCATGCTTCTT 251 Query 2496 CACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAATTCATTCCAGAA 2555 |||||||||||||| ||||||| |||||||||| |||| ||||||||| ||||||||||| Sbjct 252 CACCACTTACTTTTGTTGGGATCCCACTAAAGCAATCGCACAAGGAAACTCATTCCAGAA 311 Query 2556 AAAGGCATCGTTGTTATTTGGCACTCACCACGTTGTGGA 2594 ||||||| ||||||||||||||||||||||||||||||| Sbjct 312 AAAGGCAGCGTTGTTATTTGGCACTCACCACGTTGTGGA 350 > Ahg900551 jgi|Araly1|900551|Al_scaffold_0004_1201 Length=429 Score = 220 bits (119), Expect = 4e-56 Identities = 149/163 (91%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 2436 AGGCTTG-CATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCT 2494 ||||||| | |||||| || ||| |||||||||| |||||||||||||| |||||||||| Sbjct 234 AGGCTTGTC-TCCTAATGTTCCACTCTACAAAATGAATGAAGGGAACGAGCCATGCTTCT 292 Query 2495 TCACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAATTCATTCCAGA 2554 ||||||||||||||| ||||||| |||||||||| |||| ||||||||| |||||||||| Sbjct 293 TCACCACTTACTTTTGTTGGGATCCCACTAAAGCAATCGCACAAGGAAACTCATTCCAGA 352 Query 2555 AAAAGGCA-TCGTTGTTATTTGGCACTCACCACGTTGTGGAGG 2596 |||||||| | |||||||||||||||||||||||||||||||| Sbjct 353 AAAAGGCAGT-GTTGTTATTTGGCACTCACCACGTTGTGGAGG 394 > Ahg907699 jgi|Araly1|907699|Al_scaffold_0002_780 Length=360 Score = 156 bits (84), Expect = 1e-36 Identities = 134/158 (85%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 1749 GTTAAAAGGAAGACCTGTGCAGGGCCGTATATACGAGGGTAAAGAGCCTCCACAATTTGT 1808 ||| || |||||| | | |||| || ||||| |||||||||||||||||||||||||| Sbjct 12 GTTTAAGGGAAGAGCACTACAGGCCCATATATTTGAGGGTAAAGAGCCTCCACAATTTGT 71 Query 1809 TGCCCTTTTTCAACCTATGGTGGTC-TTAAAGGGTGGTTTGAGCTCTGGGTACAAAAGCA 1867 ||| |||||||||| |||||||||| |||| |||||||||||||||||| ||||||| || Sbjct 72 TGCACTTTTTCAACATATGGTGGTCCTTAA-GGGTGGTTTGAGCTCTGGTTACAAAAACA 130 Query 1868 GTATGGGAGAGTCAGAGT-CAACAGACGAAACCTACAC 1904 | ||| |||| || || || |||||||||||||||| Sbjct 131 GAATGATAGAGAAAG-GTTCATCAGACGAAACCTACAC 167 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 133734311522 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5