BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41740.1
Length=3541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483257 jgi|Araly1|483257|fgenesh2_kg.4__2317__AT2G41740.1 3277 0.0
Ahg486186 jgi|Araly1|486186|fgenesh2_kg.5__2178__AT3G57410.1 2750 0.0
Ahg891525 jgi|Araly1|891525|Al_scaffold_0007_3511 464 2e-129
Ahg900551 jgi|Araly1|900551|Al_scaffold_0004_1201 220 4e-56
Ahg907699 jgi|Araly1|907699|Al_scaffold_0002_780 156 1e-36
> Ahg483257 jgi|Araly1|483257|fgenesh2_kg.4__2317__AT2G41740.1
Length=3600
Score = 3277 bits (1774), Expect = 0.0
Identities = 2009/2120 (95%), Gaps = 26/2120 (1%)
Strand=Plus/Plus
Query 155 aaaaaCACAGCTCACAACCtcttttcaattattcaatttagc-tttttttctc-tt-c-t 210
||||| |||||||||||||||||||||||||||||| ||||| ||||||| || || | |
Sbjct 87 AAAAAGACAGCTCACAACCTCTTTTCAATTATTCAA-TTAGCTTTTTTTTTTCTTTCCTT 145
Query 211 -tcttcttcatcttccctcgtcttctttgccag---ttcttcttcatctttcgtcgtttt 266
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 146 CTCTTCTTCATCTTCCCTCGTCTTCTTTGCCAGTTCTTCTTCTTCACCTTTCGTCGTTTT 205
Query 267 cttAGTGCCACCCAAAGATCTTCGTGCAGGTTCATTGGCGTTTGTAGTACATAAATTTTC 326
|||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||
Sbjct 206 CTTAGTGCCACCCAAAGATCTTGGTGCAGGTTCATTGGCGTCTCTAGTGTATAAATTTTC 265
Query 327 -C-CTGACACAC------AGAAAAAGAGGATTTGACTGTTATAC--AATGTCAACAAAAG 376
| | |||||| | ||||| |||||||||||||||||| |||||| || ||||
Sbjct 266 ACTCACACACACAAAAAAAAAAAAAAAGGATTTGACTGTTATACAAAATGTCTACCAAAG 325
Query 377 TGTTGGATCCTGCATTTCAAGGAGCTGGCCAGAAACCAGGGACTGAAATCTGGAGAATTG 436
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 326 TGCTGGATCCTGCATTTCAAGGAGCTGGTCAGAAACCAGGGACTGAAATCTGGAGAATCG 385
Query 437 AGAATTTTGAGGCAGTTCCTGTACCAAAGTCTGAGCATGGAAAGTTCTATATGGGAGATA 496
||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 386 AGAATTTCGAGGTAGTTCCAGTACCAAAGTCTGAGCATGGAAAGTTCTATATGGGAGATA 445
Query 497 CTTACATTGTCTTGCAGACAACACAGAATAAAGGGGGTGCTTATTTGTTTGATATACATT 556
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 446 CTTACATTGTCTTGCAGACAACACAGAATAAGGGGGGTGCTTATTTGTTTGATATACATT 505
Query 557 TCTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTGTTAAAACAGTTG 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 506 TCTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTGTTAAAACAGTGG 565
Query 617 AACTCGATGCAGTTCTTGGAGGCCGTGCTGTCCAACACCGGGAAATTCAGGGTCATGAAT 676
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 566 AACTCGATGCAGTTCTTGGAGGCCGTGCTATCCAACACCGGGAACTTCAGGGTCATGAAT 625
Query 677 CTGACAAATTCTTGTCTTACTTCAAGCCATGTATTATACC-CTTAGAGGGTGGTGTTGCG 735
||||||| |||||||||||||||||||||||||| || || | |||||||||||||||||
Sbjct 626 CTGACAAGTTCTTGTCTTACTTCAAGCCATGTATAATTCCGC-TAGAGGGTGGTGTTGCG 684
Query 736 TCTGGTTTCAAAACAGTTGAAGAAGAGGTGTTTGAGACCCGGTTATATACTTGCAAAGGA 795
||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||
Sbjct 685 TCTGGTTTCAAAACACCTGAAGAACAAGTGTTTGAGACCCGGTTATATACTTGCAAAGGA 744
Query 796 AAACGTGCAATCCGTTTGAAGCAGGTTCCTTTTGCCCGCTCATCACTGAATCATGATGAT 855
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 AAACGTGCTATTCGTTTGAAGCAGGTTCCTTTTGCCCGCTCATCACTGAATCATGATGAT 804
Query 856 GTATTTATCTTGGACACCGAGGAAAAGATCTATCAGTTCAATGGTGCAAATTCAAACATT 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GTATTTATCTTGGACACCGAGGAAAAGATCTATCAGTTCAATGGTGCAAATTCAAACATT 864
Query 916 CAGGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTAAAAGACAAGTATCACGAAGGA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 865 CAGGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTAAAAGACAAGTATCATGAAGGA 924
Query 976 ACTTGTGATGTTGCGATTGTTGATGACGGAAAATTAGATACAGAATCAGATTCTGGTGCA 1035
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 925 ACTTGTGATGTTGCGATTGTTGATGATGGGAAATTAGATACAGAATCAGATTCTGGTGCA 984
Query 1036 TTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATCGGAAGGAAAGTTGCCAATGATGATGAC 1095
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 985 TTTTGGGTCCTCTTTGGTGGTTTTGCTCCTATCGGAAGGAAAGTTGCCAATGATGATGAC 1044
Query 1096 ATTGTCCCGGAGTCAACTCCACCTAAGCTTTATTGCATCACTGATGGTAAGATGGAACCA 1155
||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1045 ATTATCCCGGAGTCAACTCCACCTAAGCTTTATTGCACCACTGATGGTAAGATAGAACCT 1104
Query 1156 ATAGACGGTGACCTATCCAAATCTATGCTGGAAAACACTAAATGCTACCTCTTGGACTGT 1215
|| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1105 ATTGACGGTGATTTATCCAAATCTATGCTGGAAAACACCAAATGTTACCTCTTGGACTGT 1164
Query 1216 GGCGCTGAGATATATATCTGGGTTGGCCGTGTCACTCAAGTAGATGAGAGGAAAGCTGCT 1275
|| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1165 GGTGCTGAGGTATTTATCTGGGTTGGCCGTGTCACTCAAGTGGATGAGAGGAAAGCTGCT 1224
Query 1276 AGTCAAT-CTGCTGAGGAATTCCTTGCTAGTGAAAATAGGCCAAAGGCAACACATGTAAC 1334
||| ||| |||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 1225 AGT-AATTCTGCTGAGGAATTCCTTGCTAGTGAAAATAGGCCAATTGCAACACGCGTTAC 1283
Query 1335 TCGTGTAATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGCCATC 1394
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 TCGTGTTATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGCCATC 1343
Query 1395 AGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGCTGCTTTACTGAAGCA 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 AGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGCTGCTTTACTGAAGCA 1403
Query 1455 ACAAGGCGTTGGGCTCAAGGGCATTGCAAAAAGTGCACCAGTGAATGAGGATATTCCACC 1514
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1404 ACAAGGTGTTGGGCTCAAGGGTATTGCGAAAAGTGCACCAGTGAATGAGGATATTCCACC 1463
Query 1515 TCTGCTTGAAAGTGGTGGAAAATTGGAGGTTTGGTACGTTAATGGTAAAGTCAAGACTCC 1574
|||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1464 TCTGCTTGAAGGTGGTGGAAAGTTGGAGGTTTGGTACGTTAATGGTAAAGCCAAGACTCT 1523
Query 1575 CTTACCTAAAGAAGATATTGGAAAGCTCTATTCTGGGGACTGCTATTTGGTCCTTTATAC 1634
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1524 GTTACCTAAAGAAGATATTGGCAAGCTCTATTCTGGGGACTGCTATTTGGTCCTTTATAC 1583
Query 1635 CTATCATTCTGGGGAAAGGAAAGACGAATATTTCTTGAGTTGTTGGTTTGGAAAGAAAAG 1694
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1584 CTATCATTCTGGGGAGAGGAAAGACGAATATTTCTTGTGTTGTTGGTTTGGAAAGAAAAG 1643
Query 1695 CATTCCGGAGGACCAAGATACAGCAATTCGACTGGCGAATACAATGTCAAACTCGTTAAA 1754
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1644 CATTCAGGAGGACCAAGATACAGCAATTCGACTGGCGAATACAATGTCAAACTCTTTAAA 1703
Query 1755 AGGAAGACCTGTGCAGGGCCGTATATACGAGGGTAAAGAGCCTCCACAATTTGTTGCCCT 1814
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 AGGAAGACCTGTGCAGGGGCGTATATACGAGGGTAAAGAGCCTCCACAATTTGTTGCCCT 1763
Query 1815 TTTTCAACCTATGGTGGTCTTAAAGGGTGGTTTGAGCTCTGGGTACAAAAGCAGTATGGG 1874
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 1764 TTTTCAACCTATGGTGGTCCTAAAGGGTGGTTTGAGCTCTGGGTACAAAAACAGTGTGGG 1823
Query 1875 AGAGTCAGAGTCAACAGACGAAACCTACACGCCAGAATCAATTGCACTAGTTCAAGTATC 1934
|||| | ||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1824 AGAGG--G-GTCAACAGATGAAACCTACACGCCAGAATCAATTGCACTAATTCAAGTATC 1880
Query 1935 TGGAACCGGAGTTCACAATAATAAGGCTGTGCAAGTTGAAACGGTGGCAACATCTTTGAA 1994
||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct 1881 TGGAACCGGAGTTCACAATTATAAAGCTGTGCAAGTTGAATTGGTGGCAACATCTTTGAA 1940
Query 1995 CTCTTATGAGTGCTTCCTTCTGCAATCTGGTACTTCCATGTTCCTTTGGCATGGAAATCA 2054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 CTCTTATGAGTGCTTCCTTCTGCAATCTGGTACTTCCATGTTCCTTTGGCATGGAAATCA 2000
Query 2055 AAGTACGCATGAACAGCTAGAACTGGCCACTAAAGTTGCTGAATTCTTGAAGCCCGGGAT 2114
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2001 AAGTACGCATGAACAGCTAGAACTGGCCACTAAAGTTGCTGAATTCTTGAAGCCTGGGAG 2060
Query 2115 TACTCTCAAGCATGCCAAAGAAGGAACAGAGAGCTCAACCTTTTGGTTTGCACTTGGGGG 2174
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2061 TACTCTCAAGCATGCCAAAGAAGGAACGGAGAGCTCAACCTTTTGGTTTGCACTTGGGGG 2120
Query 2175 AAAACAGAATTTCACCAGCAAGAAGGCTTCCTCTGAGACGATCAGGGATCCTCACTTATT 2234
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2121 AAAACAGAATTTCACCAGCAAGAAGGCTTCCTCTGAGACTATCAGGGATCCTCACTTATT 2180
Query 2235 CTCATTTGCTTTCAACAGAG 2254
||||||| ||||||||||||
Sbjct 2181 CTCATTTTCTTTCAACAGAG 2200
Score = 2109 bits (1142), Expect = 0.0
Identities = 1234/1279 (96%), Gaps = 4/1279 (0%)
Strand=Plus/Plus
Query 2266 GTTGAGGAGATTTACAACTTTGCTCAAGATGACCTCTTGACTGAGGATATATATTTCCTA 2325
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2323 GTTGAGGAGATTTACAACTTCGCTCAAGATGACCTCTTGACTGAGGATATATATTTACTA 2382
Query 2326 GACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCTAAGGAAAAGCAA 2385
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2383 GACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCCAAGGAAAAGCAA 2442
Query 2386 ACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAAGGCTTGCAT 2445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 ACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAAGGCTTGCAT 2502
Query 2446 CCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACTTAC 2505
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2503 CCTAAAGTCCCACTCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACGTAC 2562
Query 2506 TTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAATTCATTCCAGAAAAAGGCATCG 2565
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 2563 TTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAACTCATTCCAGAAAAAGGCAGCG 2622
Query 2566 TTGTTATTTGGCACTCACCACGTTGTGGAGGATAAGTCTAACGGTGGGAACCAAGGACTA 2625
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2623 TTGTTACTTGGCACTCACCACGTTGTGGAGGATAAGTCTAACGGTGGTAACCAAGGACTA 2682
Query 2626 AGGCAAAGGGCTGAAGCACTAGCTGCCTTAAATTCGGCATTTAACTCTTCTAGTAACAGG 2685
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 2683 AGGCAAAGGGCTGAAGCACTAGCTGCCTTAAATTCTGCATTTAATTCTTCTAGTAACCGG 2742
Query 2686 CCTGCCTATTCGAGCCAGGACAGATTAAACGAAAGTCACGACGGCCCAAGACAGAGAGCT 2745
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2743 CCTGCCTACTCGAGCCAGGACAGATCAAACGAAAGTCACGACGGCCCAAGACAGAGAGCT 2802
Query 2746 GAAGCTTTAGCCGCCTTGTCATCCGCATTCAACTCTTCTTCGTCATCAACTAAATCGCCT 2805
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2803 GAAGCTTTAGCAGCATTGTCATCCGCATTCAATTCTTCTTCGTCATCAACTAAATCGCCT 2862
Query 2806 CCACCACCAAGGCCAGTGGGGACGAGTCAGGCTTCACAGAGAGCAGCAGCAGTGGCTGCT 2865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2863 CCACCACCAAGGCCAGTGGGGACGAGTCAGGCTTCACAGAGAGCAGCAGCAGTGGCTGCT 2922
Query 2866 CTTTCTCAAGTTCTTGTTGCGGAAAATAAGAAATCACCTGATACCTCTCCTACAAGAAGA 2925
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2923 CTCTCTCAAGTTCTTGTTGCGGAGAATAAGAAATCACCTGATACCTCTCCTACAAGAAGA 2982
Query 2926 TCCACTAGCTCCAACCCAGCAGATGACATCCCTCTGACGGAAGCAAAAGATGAAGAAGAG 2985
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2983 TCCACTAGCTCCAACCCAGCAGATGACACCCCTCTAACGGAAGCAAAAGATGAAGAAGAG 3042
Query 2986 GCTTCAGAGGTAGCTGGTCTTGAAGCCAAGGAAGAAGAGGAAGTTTCACCTGCAGCAGAT 3045
|||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct 3043 GCTTCAGAAGTAGCTGGTCATGAAGCCAAGGAAGAAGAGGAAGTCTCACCTGCAACAGAT 3102
Query 3046 GAAACAGAAGCAAAGCAGGAAACAGAAGAGCAAGGTGATTCTGAAATACAACCAAGTGGA 3105
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3103 GAAACAGAAGCAAAGGAGGAAACAGAAGAGCAAGGTGATTCTGAAATAGAACCAAGTGGA 3162
Query 3106 GCAACTTTCACCTATGAACAGCTGAGAGCTAAATCTGAGAACCCAGTGACTGGAATCGAT 3165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3163 GCAACTTTCACCTATGAACAGCTGAGAGCTAAATCTGAGAACCCAGTGACTGGAATCGAT 3222
Query 3166 TTCAAACGCAGAGAGGCTTATCTATCTGAGGAAGAGTTCCAAAGTGTGTTTGGGATCGAG 3225
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 3223 TTCAAACGCAGAGAGGCTTATCTATCGGAGGAAGAGTTCCAAAGTGTGTTTGGGATGGAG 3282
Query 3226 AAAGAAGCATTCAACAACTTACCACGTTGGAAGCAAGATCTGCTTAAGAAGAAGTTCGAC 3285
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 3283 AAAGAAGCATTCAACAACTTACCACGTTGGAAACAAGATCTGCTTAAGAAGAAATTGGAC 3342
Query 3286 TTGTTCTAG-TTTGGTTTTATGTGGGTCAGTCAATTTGTTGTTGGTTTGAAGAGTGTGtt 3344
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 3343 TTGTTCTAGCTTTGGTTTTATGTGGGTCAGTCAATTTGTTGTTGGTTTGAAGAATGTATT 3402
Query 3345 tttttGTTTCTCTTCTTCAATTTTATTTACTTGGCTCATTTATATTTCTCTCATGGGTTG 3404
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3403 TTTT-GTTTCTTTTCTTCAGTTTTATTTACTTGGCTCATTTATATTTCTCTCATGGGTTG 3461
Query 3405 GTTTGGGTTTGATTCTTTATATTTTCTGACAGCACAATGAGGTTTCTTGTAATGATGATG 3464
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3462 GTTTGGGTTTGATTCTTTATATTTTCTGACAGCACAATGAGGTTTCTGGTAATGATGATG 3521
Query 3465 ATCATAGATTGTAATGAATGTTTTACCCGAGACAGATTTGTGA--GTGGGTAGCAAAATT 3522
||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 3522 ATCATAGATTGTAATGATTGTTTTACCCGAGACAGATTTGTGATTGTGGGCAGCAAAATT 3581
Query 3523 CTTTGATTTGTGATCTTCC 3541
|| ||||| ||||||||||
Sbjct 3582 CTCTGATTAGTGATCTTCC 3600
> Ahg486186 jgi|Araly1|486186|fgenesh2_kg.5__2178__AT3G57410.1
Length=3196
Score = 2750 bits (1489), Expect = 0.0
Identities = 2220/2571 (86%), Gaps = 58/2571 (2%)
Strand=Plus/Plus
Query 366 GTCAACAAAAGTGTTGGATCCTGCATTTCAAGGAGCT-GGCCAGAAACCAGGGACTGAAA 424
|||| ||||||| ||||||||||| |||||||||| | || ||||||||||| |||||||
Sbjct 190 GTCAGCAAAAGTATTGGATCCTGCGTTTCAAGGAG-TCGGGCAGAAACCAGGTACTGAAA 248
Query 425 TCTGGAGAATTGAGAATTTTGAGGCAGTTCCTGTACCAAAGTCTGAGCATGGAAAGTTCT 484
||||||||||||| ||||||||| |||| || ||||| |||||||| |||||||||||||
Sbjct 249 TCTGGAGAATTGAAAATTTTGAGCCAGTCCCAGTACCGAAGTCTGAACATGGAAAGTTCT 308
Query 485 ATATGGGAGATACTTACATTGTCTTGCAGACAACACAGAATAAAGGGGGTGCTTATTTGT 544
||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| | |
Sbjct 309 ATATGGGAGATACTTACATTGTCTTGCAGTCCACACAGAATAAGGGGGGTGCTTATCTAT 368
Query 545 TTGATATACATTTCTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTG 604
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TTGATATACATTTTTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTG 428
Query 605 TTAAAACAGTTGAACTCGATGCAGTTCTTGGAGGCCGTGCTGTCCAACACCGGGAAATTC 664
| || ||||||||||| ||||||| |||||||||||| ||||||||| |||| |||||||
Sbjct 429 TCAAGACAGTTGAACTTGATGCAGCTCTTGGAGGCCGAGCTGTCCAATACCGTGAAATTC 488
Query 665 AGGGTCATGAATCTGACAAATTCTTGTCTTACTTCAAGCCATGTATTATACC-CTTAGAG 723
| |||||||||||||| ||||||||||||||||||||||| || |||||||| || ||||
Sbjct 489 AAGGTCATGAATCTGATAAATTCTTGTCTTACTTCAAGCCTTGCATTATACCACT-AGAG 547
Query 724 GGTGGTGTTGCGTCTGG-TTTC-AAAACAGTTGAAGAAGAGGTGTTTGAGACCCGGTTAT 781
||||||||||||||||| ||| ||||| || || |||| |||||| |||||| | |
Sbjct 548 GGTGGTGTTGCGTCTGGATTTAGAAAACCC--GAGGAGGAGGAGTTTGAAACCCGGCTGT 605
Query 782 ATACTTGCAAAGGAAAACGTGCAATCCGTTTGAAGCAGGTTCCTTTTGCCCGCTCATCAC 841
|||| |||||||| |||||||| ||| |||||||||||||||||||| ||||||||||
Sbjct 606 ATACCTGCAAAGGGAAACGTGCTGTCCACTTGAAGCAGGTTCCTTTTGCACGCTCATCAC 665
Query 842 TGAATCATGATGATGTATTTATCTTGGACACCGAGGAAAAGATCTATCAGTTCAATGGTG 901
|||||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||| |
Sbjct 666 TGAATCATGATGATGTGTTTATCTTGGACACCAAGGAAAAGATTTATCAGTTTAATGGGG 725
Query 902 CAAATTCAAACATTCAGGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTAAAAGACA 961
|||||||||| || || |||||||| ||||| |||| ||||||||| ||||| |||||||
Sbjct 726 CAAATTCAAATATCCAAGAGAGAGCTAAAGCGTTGGTAGTCGTTCAATATTTGAAAGACA 785
Query 962 AGTATCACGAAGGAACTTGTGATGTTGCGATTGTTGATGACGGAAAATTAGATACAGAAT 1021
||| ||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 786 AGTTTCATGAAGGAACTTGTGACGTTGCTATTGTTGATGATGGAAAATTAGATACAGAAT 845
Query 1022 CAGATTCTGGTGCA-TTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATCGGAAGGAAAGTT 1080
|||||||||| | | ||||||||||||||||| |||||||||||||| | | ||||||||
Sbjct 846 CAGATTCTGGCG-AGTTTTGGGTCCTCTTTGGGGGTTTTGCTCCAATAGCACGGAAAGTT 904
Query 1081 GCCAATGATGATGACATTGTCCCGGAGTCAACTCCACCTAAGCTTTATTGCATCACTGAT 1140
|| | ||| ||||| ||| | |||||| ||||||| |||||||||||| | ||| |||||
Sbjct 905 GCTAGTGAGGATGAAATTATTCCGGAGACAACTCCGCCTAAGCTTTATAGTATCGCTGAT 964
Query 1141 GGTAAGATGGAACCAATAGACGGTGACCTATCCAAATCTATGCTGGAAAACACTAAATGC 1200
||| | ||||| | |||||||| || ||||||||||||||||||||||| |||||||
Sbjct 965 GGTCTGGTGGAATCGATAGACGGCGATTTATCCAAATCTATGCTGGAAAACGGTAAATGC 1024
Query 1201 TACCTCTTGGACTGTGGCGCTGAGATATATATCTGGGTTGGCCGTGTCACTCAAGTAGAT 1260
||||| |||||||| || ||||| ||| ||||||||||||||| || |||||||| ||
Sbjct 1025 TACCTTTTGGACTGCGGTTCTGAGGTATTTATCTGGGTTGGCCGAGTAACTCAAGTGGAA 1084
Query 1261 GAGAGGAAAGCTGCTAGTC-AATCTGCTGAGGAATTCCTTGCTAGTGAAAATAGGCCAAA 1319
||||||||| |||||| || || |||||||||| || ||||||||||||||||||||||
Sbjct 1085 GAGAGGAAAACTGCTA-TCCAAGCTGCTGAGGATTTTGTTGCTAGTGAAAATAGGCCAAA 1143
Query 1320 GGCAACACATGTAACTCGTGTAATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTT 1379
|||||||| |||| ||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 1144 GGCAACACGCATAACCCGTGTTATTCAAGGTTATGAGCCCCATTCTTTCAAGTCTAACTT 1203
Query 1380 TGACTCTTGGCCATCAGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGC 1439
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1204 TGACTCTTGGCCATCAGGCTCGGCAACTCCTGCTAACGAAGAAGGACGAGGAAAAGTCGC 1263
Query 1440 TGCTTTACTGAAGCAACAAGGCGTTGGGCTCAAGGGCAT-TGCAAAAAGTGCACCAGTGA 1498
||| ||||| ||||||||||| |||||| | |||||| | | ||||||| |||||||||
Sbjct 1264 TGCATTACTTAAGCAACAAGGTGTTGGGTTAAAGGGCCTGT-CAAAAAGCACACCAGTGA 1322
Query 1499 ATGAGGATATTCCACC-TCTGCTTGAAAGTGGTGGAAAATTGGAGGTTTGGTACGTTAAT 1557
|||| ||||||||||| | |||||||| | |||||||| ||||||||||||||| || ||
Sbjct 1323 ATGAAGATATTCCACCAT-TGCTTGAAGGAGGTGGAAAGTTGGAGGTTTGGTACATTGAT 1381
Query 1558 GGTAAAGTC-AAGACTCC-CT-TACCTAAAGAAGATATTGGAAAGCTCTATTCTGGGGAC 1614
|| || || |||||||| || | || ||||| ||| | ||||| ||||||||||||||
Sbjct 1382 GGCAAC-TCGAAGACTCCTCTAT-CC-AAAGATGATGTCGGAAAACTCTATTCTGGGGAT 1438
Query 1615 TGCTATTTGGTCCTTTATACCTATCATTCTGGGGAAAGGAAAGACGAATATTTCTTGAGT 1674
||||||||||||||||||||||| |||||||| ||||||||||| || || |||||| |
Sbjct 1439 TGCTATTTGGTCCTTTATACCTACCATTCTGGTGAAAGGAAAGAAGACTACTTCTTGTGC 1498
Query 1675 TGTTGGTTTGGAAAGAAAAGCATTCCGGAGGACCAAGATACAGCAATTCGACTGGCGAAT 1734
||||||||||||||||| || | || |||||| ||||| |||||| |||| || ||||
Sbjct 1499 TGTTGGTTTGGAAAGAATAGTAATCAGGAGGATCAAGAAACAGCAGTTCGTCTAGCGAGC 1558
Query 1735 ACAATGTCAAACTCGTTAAAAGGAAGACCTGTGCAGGGCCGTATATACGAGGGTAAAGAG 1794
|||||| |||| ||||| || |||||||| ||||||| |||||||| ||||||||||||
Sbjct 1559 ACAATGACAAATTCGTTGAAGGGAAGACCAGTGCAGGCCCGTATATTTGAGGGTAAAGAG 1618
Query 1795 CCTCCACAATTTGTTGCCCTTTTTCAACCTATGGTGGTC-TTAAAGGGTGGTTTGAGCTC 1853
||||||||||||||||| |||||||||| |||||| ||| |||| |||||||||||||||
Sbjct 1619 CCTCCACAATTTGTTGCACTTTTTCAACATATGGTTGTCCTTAA-GGGTGGTTTGAGCTC 1677
Query 1854 TGGGTACAAAAGCAGTATGGGAGAGTCAGAGT-CAACAGACGAAACCTACACGCCAGAAT 1912
||| ||||||| || ||| |||| || || || |||||||||||||||| || ||||
Sbjct 1678 TGGTTACAAAAATAGCATGACAGAGAAAG-GTTCATCAGACGAAACCTACACACCCGAAT 1736
Query 1913 CAATTGCACT-AGTTCAAGTATCTGGAACCGGAGTTCACAATAATAAGGCTGTGCAAGTT 1971
|||||||||| | |||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 1737 CAATTGCACTTA-TTCAAGTATCTGGAACTGGAGTTCACAATAATAAGGCACTACAAGTT 1795
Query 1972 GAAACGGTGGCAACATCTTTGAACTCTTATGAGTGCTTCCTTCTGCAATCTGGTACTTCC 2031
||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1796 GAAGCTGTGGCAACTTCTTTGAACTCTTATGACTGCTTCCTTCTGCAATCTGGTACTTCC 1855
Query 2032 ATGTTCCTTTGGCATGGAAATCAAAGTACGCATGAACAGCTAGAACTGGCCACTAAAGTT 2091
|||||||||||| |||||| || ||||||||||| |||| ||||||||| ||||||||
Sbjct 1856 ATGTTCCTTTGGGTTGGAAACCATAGTACGCATGAGCAGCAAGAACTGGCTGCTAAAGTT 1915
Query 2092 GCTGAATTCTTGAAGCCCGGGATTACTCTCAAGCATGCCAAAGAAGGAACAGAGAGCTCA 2151
||||||||||| ||||| ||||||||| ||||||| || ||||| || |||||||||||
Sbjct 1916 GCTGAATTCTTAAAGCCTGGGATTACTATCAAGCACGCAAAAGAGGGGACAGAGAGCTCG 1975
Query 2152 ACCTTTTGGTTTGCACTTGGGGGAAAACAGAATTTCACCAGCAAGAAGGCTTCCTCTGAG 2211
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1976 TCCTTTTGGTTTGCACTTGGGGGAAAACAGAACTTCACCAGCAAGAAGGTTTCCTCTGAG 2035
Query 2212 AC-GATCAGGGATCCTCACTTATTCTCATT-TGCTTTCAACAGAGGAAAGTTTCAGGTTG 2269
|| | |||||||||||||||| ||||| || | ||| |||||||||||||||||||||||
Sbjct 2036 ACTG-TCAGGGATCCTCACTTGTTCTCCTTCTCCTT-CAACAGAGGAAAGTTTCAGGTTG 2093
Query 2270 AGGAGATTTACAACTTTGCTCAAGATGACCTCTTGACTGAGGATATATATTTCCTAGACA 2329
| |||||| ||||||||| |||||||||||||||||| ||||| || |||| ||||| |
Sbjct 2094 AAGAGATTCACAACTTTGATCAAGATGACCTCTTGACGGAGGAAATGCATTTACTAGATA 2153
Query 2330 CCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCTAAGGAAAAGCAAACTG 2389
| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 2154 CTCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGACCCCAAGGAAAAACAAACTG 2213
Query 2390 TATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAAGGCTTG-CATCCT 2448
|||||||||||||||| ||||||| |||| ||||| ||| ||||||||||| | |||
Sbjct 2214 CCTTTGAGATTGGCCAAAGATACATAAATCTGGCTGGTTCCCTGGAAGGCTTGTC-TCCA 2272
Query 2449 AAAGTCCCAATCTACAAAATCAATGAAGGGAAC-GAACCATGCTTCTTCACCACTTACTT 2507
||||| ||| | |||||||||| ||| ||||| ||||||||||||||||||||||| ||
Sbjct 2273 AAAGTTCCATTATACAAAATCACTGA-GGGAAATGAACCATGCTTCTTCACCACTTATTT 2331
Query 2508 TTCTTGGGATGCC-ACTAAAGCTA-TCGTACAAGGAAATTCATTCCAGAAA-AAGGCATC 2564
||| |||||| || |||||||||| | || ||||| ||||| ||||| ||| |||||| |
Sbjct 2332 TTCATGGGAT-CCTACTAAAGCTACT-GTGCAAGGGAATTCCTTCCA-AAAGAAGGCAGC 2388
Query 2565 GTTGTTATTTGGCACTCACCACGTTGTGGAGGATAAGTCTAA-CGGTGGGAACCAAGGAC 2623
|| ||| |||| || |||||||||||||||||| |||| || | ||||||||||||| |
Sbjct 2389 ATTATTACTTGGTACACACCACGTTGTGGAGGATCAGTC-AAGCAGTGGGAACCAAGGGC 2447
Query 2624 TAAGGCAAAGGGCTGAAGCACTAGCTGCCTTAAATTCGGCATTTAACTCTTCTAGTAACA 2683
|||||||||||||| || |||||||||| | ||| |||||||| |||||| | |
Sbjct 2448 CAAGGCAAAGGGCTGCTGCTTTAGCTGCCTTGACTTCTGCATTTAATTCTTCTTCTGGGA 2507
Query 2684 GGCCT-GCCTATTCGAGCC-AGGACAGATTAAACGAAAGTCACG-ACGGCCCAAGACAGA 2740
| | | | | |||||| || |||||| ||| | |||||| | | || |||||||| |
Sbjct 2508 GAACAAGT-TCTCCGAGCCGAG-ACAGATCAAATGGAAGTCAAGGA-GGTCCAAGACAAA 2564
Query 2741 GAGCTGAAGCTTTAGCCGCCTTGTCATCCGCATTCAACTCTTCTTCGTCATCAACTAAAT 2800
| |||||||||||||||||||| ||||||||||||| ||||| | ||||||| | |
Sbjct 2565 GGGCTGAAGCTTTAGCCGCCTTAACATCCGCATTCAATTCTTCACCATCATCAA--AG-T 2621
Query 2801 CGCCTCCACCACCAAGGCCAGTGGG-GACGAGTCAGGCTTCACAGAGAGCAGCAGCAGTG 2859
| ||||| || ||| |||| | ||| |||||||| ||||| |||||||||||||||
Sbjct 2622 CACCTCC-CCG--AAGACCAG-GATTGACAAGTCAGGCGTCACAAAGAGCAGCAGCAGTG 2677
Query 2860 GCTGCTCTTTCTCAAGTTCTTGTTGCGGAAAATAAGAAATCACCTGATACC 2910
|||||||| || |||||||| ||| || || ||||||||||||||||||
Sbjct 2678 GCTGCTCTCTCCCAAGTTCTCACTGCTGAGAAGAAGAAATCACCTGATACC 2728
> Ahg891525 jgi|Araly1|891525|Al_scaffold_0007_3511
Length=387
Score = 464 bits (251), Expect = 2e-129
Identities = 311/339 (92%), Gaps = 8/339 (2%)
Strand=Plus/Plus
Query 2263 CAGGTTGAGGAGATTTACAACTTTGCTCAAGATGACCTCTTGACTGAGG----ATATATA 2318
|||||||||||||||||||||||| | |||||||||||||| ||||||| |||||||
Sbjct 13 CAGGTTGAGGAGATTTACAACTTTTCGCAAGATGACCTCTTAACTGAGGATATATATATA 72
Query 2319 T-T-TCCTAGACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCTAAG 2376
| | | |||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 73 TATATACTAGACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTTTGGATCCCAAG 132
Query 2377 GAAAAGCAAACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAA 2436
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 133 GAAAAGCAAACTGTATTTGAGATTGGCCGAGAATACATAGATCTTGCTGGATCCTTGGAA 192
Query 2437 GGCTTG-CATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTT 2495
|||||| | |||||| || ||| |||||||||| |||||||||||||| |||||||||||
Sbjct 193 GGCTTGTC-TCCTAATGTTCCACTCTACAAAATGAATGAAGGGAACGAGCCATGCTTCTT 251
Query 2496 CACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAATTCATTCCAGAA 2555
|||||||||||||| ||||||| |||||||||| |||| ||||||||| |||||||||||
Sbjct 252 CACCACTTACTTTTGTTGGGATCCCACTAAAGCAATCGCACAAGGAAACTCATTCCAGAA 311
Query 2556 AAAGGCATCGTTGTTATTTGGCACTCACCACGTTGTGGA 2594
||||||| |||||||||||||||||||||||||||||||
Sbjct 312 AAAGGCAGCGTTGTTATTTGGCACTCACCACGTTGTGGA 350
> Ahg900551 jgi|Araly1|900551|Al_scaffold_0004_1201
Length=429
Score = 220 bits (119), Expect = 4e-56
Identities = 149/163 (91%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 2436 AGGCTTG-CATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCT 2494
||||||| | |||||| || ||| |||||||||| |||||||||||||| ||||||||||
Sbjct 234 AGGCTTGTC-TCCTAATGTTCCACTCTACAAAATGAATGAAGGGAACGAGCCATGCTTCT 292
Query 2495 TCACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAATTCATTCCAGA 2554
||||||||||||||| ||||||| |||||||||| |||| ||||||||| ||||||||||
Sbjct 293 TCACCACTTACTTTTGTTGGGATCCCACTAAAGCAATCGCACAAGGAAACTCATTCCAGA 352
Query 2555 AAAAGGCA-TCGTTGTTATTTGGCACTCACCACGTTGTGGAGG 2596
|||||||| | ||||||||||||||||||||||||||||||||
Sbjct 353 AAAAGGCAGT-GTTGTTATTTGGCACTCACCACGTTGTGGAGG 394
> Ahg907699 jgi|Araly1|907699|Al_scaffold_0002_780
Length=360
Score = 156 bits (84), Expect = 1e-36
Identities = 134/158 (85%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 1749 GTTAAAAGGAAGACCTGTGCAGGGCCGTATATACGAGGGTAAAGAGCCTCCACAATTTGT 1808
||| || |||||| | | |||| || ||||| ||||||||||||||||||||||||||
Sbjct 12 GTTTAAGGGAAGAGCACTACAGGCCCATATATTTGAGGGTAAAGAGCCTCCACAATTTGT 71
Query 1809 TGCCCTTTTTCAACCTATGGTGGTC-TTAAAGGGTGGTTTGAGCTCTGGGTACAAAAGCA 1867
||| |||||||||| |||||||||| |||| |||||||||||||||||| ||||||| ||
Sbjct 72 TGCACTTTTTCAACATATGGTGGTCCTTAA-GGGTGGTTTGAGCTCTGGTTACAAAAACA 130
Query 1868 GTATGGGAGAGTCAGAGT-CAACAGACGAAACCTACAC 1904
| ||| |||| || || || ||||||||||||||||
Sbjct 131 GAATGATAGAGAAAG-GTTCATCAGACGAAACCTACAC 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133734311522
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5