BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41750.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935027 jgi|Araly1|935027|scaffold_403015.1 1208 0.0
> Ahg935027 jgi|Araly1|935027|scaffold_403015.1
Length=800
Score = 1208 bits (654), Expect = 0.0
Identities = 731/769 (95%), Gaps = 2/769 (0%)
Strand=Plus/Plus
Query 1 GACAGAGCAGTGACGATGGAGGACGAGCAAGACGCGCATCATCGCCGGCAGATCTGCGAC 60
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 8 GACAGAGCAGTGACGATGGAGGAAGAGCAAGACACGCATCATCGCCGGCAGATCTGCAAC 67
Query 61 AACTGCGATCGCCCAAATGCGATTTGTCTCTGCCACGTCTTACCAGCGGATCTAATTCCG 120
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 68 AACTGCGATCGTCCAAATGCGATTTGTCTCTGCCACGTCTTACCGGCGGATCTAATTCCA 127
Query 121 ACGAATACAGAAATCATCATCCTCCACCATCCACACGAGTCACGCCACAAGCTCAACACC 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 ACGAATACAGAGATCATCATCCTCCACCATCCACACGAGTCACGCCACAAGCTCAACACA 187
Query 181 ACTCCTCTCCTTACCAAATCCTTACTAAACGTCACCAGAATCCCCGCCCGCCGTCTCCTC 240
|| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 188 ACACCTCTCCTTACCAAATCCTTACGAAACGTCACCAGAATCCCCGCCCGCCGTATCCTC 247
Query 241 CGCCGTCACATCTCCACCGCCGGAGGAACCGCACT-CCCAGCACCGCCAACAATCTACCT 299
||||||||||||||||||| ||||| |||| | | |||| |||| ||||||||||||||
Sbjct 248 CGCCGTCACATCTCCACCGTCGGAGAAACCTC-TTCCCCATCACCACCAACAATCTACCT 306
Query 300 CTTCCCTTCTTCTCCTTCCTCTCCCGCCGTCACTATATCCGAATTCAAATCCCTAAACCT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 ATTCCCTTCTTCTCCTTCCTCTCCCGCCGTCACTATATCCGAATTCAAATCCCTAAACCT 366
Query 360 CTTAAACCATCGTGAGATCTCAAATCCCCCGCCGCTGAGACTAATCGTATTCGACGCGAC 419
|||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 367 CTTAAACCATCGAGACATCTCAAATCCGCCGCCGCTGAGACTCATCGTATTCGACGCGAC 426
Query 420 GTGGAAACACGCGAAGGAGATGGTCAAAGCTAGCGAGGTGGTGTTAAGAGAAGCAGGAGC 479
|||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 427 GTGGAAGCACGCGAAGGAGATGGTCAAAGCTAGCGAGGAGGTTTTAAGAGAAGCAGGAGC 486
Query 480 GGTTAGAGTGTGTTTGGATACGGAAATAGACGCATCAGTGAGTGGAGGAACCATCTACGA 539
||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 487 GGTTAGAGTATGTTTGGATACGGAAATAGACGCATCTGTGAGCGGAGGAACCATCTACGA 546
Query 540 TTCAGAGCTTGTGCTAAGGAAGGAACCATTCGGAGGATGTGTAACTACGGCGGAGGCTGT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 547 TTCAGAGCTTGTGCTAAGGAAGGAACCATTCGGAGGATGTGTAACTACGGCGGAGGCAGT 606
Query 600 GGCACGGTGCTTAGGAGCTATTGAACCTGACGGTGAAGAAATAGAGAGGAAGCTGATTAG 659
|||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||
Sbjct 607 GGCACGGTGCTTAGGAGCCATTGAACCGGACGGTGAAGAAATCGAGAAGAAGCTGATTAG 666
Query 660 TGTTTTGAAAGAGATGGTTAGATTTCAATCTAAGTACTTGAAGCCTATGAAACCAAGACC 719
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 667 TGTTTTGAAAGAGATGGTTAGATTCCAATCTAAGTACTTGAAGCCCATGAAACCAAGACC 726
Query 720 TAAGTTATTGAAGAAGAGATTTCAGAATCAGCAACCACTTGAACAAGAA 768
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CAAGTTATTGAAGAAGAGATTTCAGAATCAGCAACCACTTGAACAAGAA 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5