BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41760.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935028 jgi|Araly1|935028|scaffold_403016.1 1083 0.0
> Ahg935028 jgi|Araly1|935028|scaffold_403016.1
Length=706
Score = 1083 bits (586), Expect = 0.0
Identities = 667/706 (94%), Gaps = 6/706 (1%)
Strand=Plus/Plus
Query 75 TGATCAAA-TCCTAAGAGAGAATGTCCGGCGTCACCTCGGAGCCTATTGCTATGGATGCC 133
|||||||| ||| || | | |||| || | ||||||||||||| |||||| |||||||||
Sbjct 1 TGATCAAATTCC-AAAAAAAAATGGCCAGTGTCACCTCGGAGCTTATTGCAATGGATGCC 59
Query 134 ACTCGGTTCCAGCACACTCCTTACTACTGCGAAGAGAATGTGTATCTGCTCTGCAAGACG 193
||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 60 ACTCGATTCCAGCACACTCCCTACTACTGCGAAGAGAACGTGTATCTGCTCTGCAAGAAG 119
Query 194 TTGTGCGAGAATGGTGTAGCGGAGGCAACGTG-TTCTGATTTGTTTGTTGTTTTTATCTC 252
||||||||||||||||||||||| |||||| | ||||||||||||||||||||| |||||
Sbjct 120 TTGTGCGAGAATGGTGTAGCGGATGCAACG-GATTCTGATTTGTTTGTTGTTTTCATCTC 178
Query 253 CAATGAGAAGAAGCAGGTTCCACTTTGGCATCAGAAAGCTAGTACCAGAGCTGATGGGGT 312
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 179 GAATGAGAAGAAGCAGGTTCCACTTTGGCATCAGAAAGCTAGTAGCAGAGCTGATGGGGT 238
Query 313 TGTACTGTGGGATTATCATGTCATCTGTGTCCAGAGGAAGAAAGAAAGTGATTCTGAGCC 372
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 239 TGTACTGTGGGATTATCATGTCATCTGTGTCCAGAGGAAGAAAGTAAGTGATTCTGAGCC 298
Query 373 TTTGGTGTGGGATCTTGATTCGACTTTGCCTTTCCCTTCACCCTTAGCCTCATATGTGAC 432
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 299 TTTGGTGTGGGATCTTGATTCGACTTTGCCCTTCCCTTCACCCTTAGCCTCATATGTGAC 358
Query 433 TGAAACTATCCAGCCATCTTTTCAGCTTTTCGCAGAGTACCAGAGGTTCTTCCGCATTGT 492
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 TGAAACTATCCAGCCATCTTTTCAGCTTTTCGCAGACTACCAGAGGTTCTTCCGCATTGT 418
Query 493 TCATGCTCCTCTGTTCTTTAAGCA-TTTCGCTTCCGATAGAAGACACATGAAAGAACCTG 551
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||
Sbjct 419 TCATGCTCCTCTGTTCTTTAAGCACTTT-GCTTCTGATAGAAGACACATGAAAGAGCCTG 477
Query 552 ATGGAAGTTGGACTGCTCAACCTCCACCCTATGAACCCATTGTTGCCCAAGATGGAATCT 611
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 478 ATGGAAGTTGGACTGCTCAACCTCCACCCTATGAACCCATTGTTGCCCAAGACGGAATTT 537
Query 612 TGCACAATTTGAGCGAGTACATTGCCATGAGCGGTGCGGATACATTGTCAAGCTTGGATC 671
||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 538 TGCACAATTTGAGCGAGTACATTTCCATGAGCGGTGTGGATACATTGTCGAGCTTGGATG 597
Query 672 CCGAAACAGTGACAGCAGCAATTTCACAGAAACTTGGTGTTGTGGTGAGCCACACTCAGC 731
| |||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 598 CTGAAACAGTGAGAGCGGCGATTTCGCAGAAACTTGGTGTTGTGGTGAGCCACACTCAGC 657
Query 732 TTCAGGATCTCTTCACCAAGCTTCCTTAGCATTCCAATGTCTTTTT 777
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 TTCAGGATCTCTTCACCAAGCTTCCTTAGCATTCCAAGGTCTTTTT 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5