BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41770.1
Length=2747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483259 jgi|Araly1|483259|fgenesh2_kg.4__2319__AT2G41770.1 4344 0.0
Ahg938716 jgi|Araly1|938716|scaffold_502907.1 2220 0.0
Ahg935010 jgi|Araly1|935010|scaffold_402998.1 809 0.0
Ahg935009 jgi|Araly1|935009|scaffold_402997.1 555 8e-157
Ahg935008 jgi|Araly1|935008|scaffold_402996.1 407 2e-112
> Ahg483259 jgi|Araly1|483259|fgenesh2_kg.4__2319__AT2G41770.1
Length=2722
Score = 4344 bits (2352), Expect = 0.0
Identities = 2614/2738 (95%), Gaps = 28/2738 (1%)
Strand=Plus/Plus
Query 16 CCAAAGTTTTGCAATTGCATTGACCTTA-CAGCTCACAGAGACTCTCAGACTTGGCTTTC 74
|||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||
Sbjct 1 CCAAAGTTTTGCAATTGCATTGACCTTACCAGCTCACAGAGACTCTCAAACTTCGCTTTC 60
Query 75 CTATCAAAGCTCTTTTACATTTGCATTCAAGCTTAAGCAACGTCAATTCCAACTACAACA 134
| |||||||||||||| || |||||||||||||||||||| ||| | | ||||||
Sbjct 61 CAATCAAAGCTCTTTTGCA-TTGCATTCAAGCTTAAGCAA---CAA---C-A--ACAACA 110
Query 135 ACCGCATTACTTTCACTTGCAAACAAAACACGAATCCAA-AACTTCCATTTTTGTTCACA 193
| |||||||| |||||||| | |||| |||||||||||| || || |||||||||||||
Sbjct 111 ATCGCATTACATTCACTTGTAGACAAGACACGAATCCAACAA-TTTAATTTTTGTTCACA 169
Query 194 AATCTCAGCTTCT--TCT-G-A-TTCAAAAAGTTTTGAGCTT-TATTGATCCAATGTTGG 247
|||||||| |||| | | | | || |||||| ||||||| | ||||||| |||||||
Sbjct 170 AATCTCAGGTTCTGATTTAGAAGTT-TTAAAGTTGTGAGCTTGT-TTGATCCGATGTTGG 227
Query 248 TTCAGGATCGTGCGGCGCCTTCTCCTGCCAAGCCGCCGAAATCTCAGATCAGAGAACTAC 307
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TTCAGGATCGTGCAGCGCCTTCTCCTGCCAAGCCGCCGAAATCTCAGATCAGAGAACTAC 287
Query 308 CTACTCATCAACAGATCCGACGACGATTCAGTGAACCCAAAAACTTAGATTTCTCGACTT 367
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 288 CTACTCATCAACAGATCCGACGACGATTCAGTGAACCCAAAAACCTAGATTTCTCGACTT 347
Query 368 GGTTCTCTGAGAATCTCTCTAGAATTGCTGTCTTCTCTCTCTTAATCGTCACCATAGTAG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GGTTCTCTGAGAATCTCTCTAGAATTGCTGTCTTCTCTCTCTTAATCGTCACCATAGTAG 407
Query 428 CT-TTCTTCTTCCTCTACAACACCACCGACACTGCTTCTCTCCTTTGTTTCCAGTCTCAG 486
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CTCTT-TTCTTCCTCTACAACACCACCGACACTGCTTCTCTCCTTTGTTTCCAGTCTCAG 466
Query 487 TCAACTCAATTTCTTCAATCTCTCTCTCGCCCTCAAATCAAATGGAATTCGATCCCAGTC 546
|||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 467 TCAACTCAGTCGCTTCAATCTCTCTCTCGCCCTCAAATCAAGTGGAATTCGATCCGAGTG 526
Query 547 GTCCCTGATAAAACCTCCCCGTACGCTAATTTCCAGACAGAGAAATGGATTGTTGTGTCG 606
||||| || || ||||| || ||||||||||||| ||| |||||||||||||||||||||
Sbjct 527 GTCCCCGACAAGACCTCTCCTTACGCTAATTTCCTGACGGAGAAATGGATTGTTGTGTCG 586
Query 607 GTTACCAAGTACCCAACTGAGGAGCTCAAGAGCTTGGTGAAGATTCGTGGATGGCAGGTT 666
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 587 GTGACCAAGTACCCAACTGAGGAGCTCAAGAGCTTGGTGAAGATTCGTGGATGGCAAGTT 646
Query 667 CTAGCTATTGGAAACTCGGCGACACCCAAGGATTGGAGTCTTAAAGGTTCCATCTTTTTG 726
||||| ||||||||||||| |||||| |||||||||||||||||||| || |||||||||
Sbjct 647 CTAGCGATTGGAAACTCGGTGACACCGAAGGATTGGAGTCTTAAAGGCTCGATCTTTTTG 706
Query 727 TCTCTCGATGCTCAAGCTGAATTGGGTTATCGAGTTTTAGATCACTTGCCTTATGATTCT 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TCTCTCGATGCTCAAGCTGAATTGGGTTATCGAGTTTTAGATCACTTGCCTTATGATTCT 766
Query 787 TTCGTAAGGAAGAGTGTTGGTTACTTGTTCGCGATCCAGCACGGTGCGAAGAAGATCTAT 846
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TTCGTGCGGAAGAGTGTCGGTTACTTGTTCGCGATCCAGCACGGTGCGAAGAAGATCTAT 826
Query 847 GATGCTGATGATCGTGGTGAAGTGATTGATGGAGATCTAGGCAAGCATTTTGATGTTGAG 906
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 827 GATGCGGATGATCGTGGTGAAGTGATTGATGGAGATCTAGGGAAGCATTTTGATGTTGAG 886
Query 907 TTAGTTGGTCTAGATTCTAAGCAAGAACCGATTTTGCAGTATAGTCATGAGAACCCCAAT 966
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TTAGTTGGTGTAGATTCTAAGCAAGAACCGATTTTGCAGTATAGTCATGAGAACCCCAAT 946
Query 967 AGGACTGTGGTTAATCCTTATATTCATTTCGGGCAACGTTCCGTTTGGCCTAGAGGTTTG 1026
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 947 AGAACTGTGGTTAATCCTTATATTCATTTCGGGCAACGTTCGGTTTGGCCTAGAGGTTTG 1006
Query 1027 CCATTAGAGAATGTAGGTGAGATCAATCATGAGGAGTATTACACTGAGGTTTTTGGTGGT 1086
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1007 CCATTAGAGAATGTAGGTGAGATCAATCATGAAGAGTATTACACTGAGGTTTTTGGTGGT 1066
Query 1087 AAGCAGTTTATACAGCAAGGGATTTCTAACGGTTTACCGGATGTTGATTCGGTGTTTTAC 1146
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1067 AAGCAGTTTATACAGCAAGGGATTTCGAACGGTTTACCGGATGTTGATTCGGTGTTTTAC 1126
Query 1147 TTCACTAGGAAGACGACTTTAGAAGCTTTTGATATTAGGTTCGATGAGCATTCTCCTAAA 1206
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1127 TTCACTAGGAAAACGACTTTAGAAGCCTTTGATATTAGGTTCGATGAGCATTCTCCGAAA 1186
Query 1207 GTTGCTTTACCTCAAGGTGTGATGGTGCCGGTTAATTCGTTTAACACTCTTTACCATTCG 1266
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GTTGCTTTGCCTCAAGGTGTGATGGTGCCGGTTAATTCGTTTAACACTCTTTACCATTCG 1246
Query 1267 TCAGCCTTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCTGATGTGCTG 1326
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1247 TCGGCCTTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTGTATGGCTTCTGATGTGTTG 1306
Query 1327 AGAGGTTACTGGGGACAAAGGCTTTTGTGGGAGCTTGGTGGTTATGTTGCTGTTTATCCA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 AGAGGTTACTGGGGACAAAGGCTTTTGTGGGAGCTTGGTGGTTATGTTGCTGTTTATCCA 1366
Query 1387 CCTACAGCTCACCGGTTTGATAGAATCGAGGCTTACCCTTTTGTAGAGGAGAAGGATCTT 1446
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1367 CCTACGGCTCACCGGTTTGATAGAATCGAAGCTTACCCTTTTGTAGAGGAGAAGGATCTT 1426
Query 1447 CATGTTAATGTTGGTCGTTTGATCAAGTTCTTACTTGCTTGGAGATCAGAGAAGCATAGT 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 CATGTTAATGTTGGTCGTTTGATCAAGTTCTTACTTGCTTGGAGATCAGAGAAGCATAGT 1486
Query 1507 TTCTTTGAGACGGTCCTTGATTTGAGCTTTGCTATGGCTGAAGAAGGGTTTTGGACAGAA 1566
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1487 TTCTTTGAGACCATCCTTGATTTGAGCTTTGCTATGGCTGAAGAAGGGTTTTGGACTGAA 1546
Query 1567 CAGGATTTGAAATTCACAGCTGCTTGGCTTCAGGATTTGATTGCTGTTGGGTACCAACAA 1626
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CAGGATTTAAAATTCACAGCTGCTTGGCTTCAGGATTTGATTGCTGTTGGGTACCAACAG 1606
Query 1627 CCGAGATTGATGTCGCTGGAATTGGATCGCCCGCGAGCAAGTATCGGTCATGGAGATAGA 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 CCGAGATTGATGTCGCTGGAATTGGATCGCCCGCGAGCAAGTATCGGTCATGGAGATAGA 1666
Query 1687 AAAGAGTTTGTTCCAAGGAAGTTACCTTCGGTTCATCTCGGGGTTGAGGAGACTGGCACA 1746
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1667 AAAGAGTTTGTTCCAAGGAAGTTGCCTTCGGTTCATCTCGGGGTTGAGGAGACCGGCACA 1726
Query 1747 GTGAGCACTGAAATAGGGAACTTGATTAGGTGGAGGAAGAATTTTGGGAATGTTGTGCTG 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 GTGAGCACTGAAATAGGGAACTTGATTAGGTGGAGGAAGAATTTTGGGAATGTTGTGCTG 1786
Query 1807 GTTATGTTTTGTAACGGTCCCGTTGAACGTACCGCACTCGAGTGGAGGTTACTTTATGGC 1866
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1787 GTTATGTTTTGTAACGGTCCGGTTGAACGCACCGCACTCGAGTGGAGGTTACTTTACGGC 1846
Query 1867 CGGATATTCAAAACTGTTGTGATACTT-TCTTCTCAGAAGAACTCAGATCTCTATGTAGA 1925
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 1847 CGGATATTCAAAACTGTTGTGATA-TTGTCTTCTCAGAAGAACTCAGATCTCTATGTCGA 1905
Query 1926 AGAAGCCAAACTCGATCACATTTACAAGCATCTACCAAAGATATTTGATCGATACAGCAG 1985
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1906 AGAAGCCAAACTCGATCACATTTACAAGCATCTTCCGAAGATATTTGATCGATACAGCAG 1965
Query 1986 CGCAGAAGGATTTTTGTTTGTTGAAGATGATACAGTTCTCAATTACTGGAATCTACTTCA 2045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 CGCAGAAGGATTTTTGTTTGTTGAAGATGATACAGTTCTCAATTACTGGAATCTACTTCA 2025
Query 2046 AGCTGACAAATCTAAGATTTGGACTACAGACAAGGTATCAAAGTCTTGGACATCAGTGAA 2105
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2026 AGCTGACAAGTCGAAGATTTGGACTACAGACAAGGTATCAAAGTCATGGACATCAGTGAA 2085
Query 2106 ACCGACCGGGAAC-TCTGATTGGTTTTCTGTACAAGCAGAGTTAGTGAAGAAAACTGTAA 2164
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2086 ACCGACCGG-AACCTCTGATTGGTTTTCTGTACAAGCAGAGTTAGTGAAGAAAACTGTAA 2144
Query 2165 GTACAATGCCAGCTCATTTCCAAGTTAACTACAAGGACGCCACCAAGAACAATCATGAGA 2224
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 ATACAATGCCAGCTCATTTTCAAGTTAACTACAAGGACGCCACCAAGAACAATCATGAGA 2204
Query 2225 CCTTAACAGTATGCAGTTCAGAGGTATTCTATGTGCCTAAAAGACTGGTAACTGACTTTA 2284
|||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct 2205 CCTTAACAGTTTGCAGTTCAGAGGTATTCTACGTGCCTAAACGACTAGTAACTGACTTTA 2264
Query 2285 TCGATCTTGTTGATCTCGTGGGCGATATGGACTTGCATTACAAAGTGGCTGTGCCAATGT 2344
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2265 TCGATCTTGTTGATCTCGTGGGTGATATGGACTTGCATTACAAAGTGGCTGTGCCAATGT 2324
Query 2345 TCTTCTTGTCTATGGATTCGCCTCAGAATTTTGACCCGGTTCTCGGTTCAATGGTATATA 2404
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2325 TCTTCTTGTCGATGGATTCGCCTCAGAATTTTGACCCGGTTCTTGGTTCAATGGTATATA 2384
Query 2405 AGAGGAAATCAGCTTCGTTTAACACTTCTTCGAGTCTGTATTCTGCTAAAGCACCTGCGG 2464
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2385 AGAGGAAATCAGCTTCGTTTAACACTTCTTCGAGTCTGTATTCTGCGAAAGCACCTGCGG 2444
Query 2465 TTCACCCGTGGAGCATATCAAGCGAACAAGATTTCATCAAATTGGTTCAGCAAATGGCTG 2524
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 TTCACCCGTGGAGTATATCAAGCGAACAAGATTTCATCAAATTGGTTCAGCAAATGGCTG 2504
Query 2525 AGGGCGACCCGCTTCTGATGGAGTTGGTATGATGGACTCAGGGTATAGAGCTTGCAGTAA 2584
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2505 AGGGCGACCCGCTTCTGATGGAATTGGTATGATGGACTCAGGGTATAGAACTTGCAGTAA 2564
Query 2585 TGCAATGATAGAAACAGAGTTATACAAAAATTGTGTTTTTGATTCTTTTCTTATTGGTTC 2644
|||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2565 TGCAATGATAGAAAAAGAGTTATACAAAAATTGGGTCTTTGATTCTTTTCTTATTGGTTC 2624
Query 2645 CCTTTTCAGAAt-ttttttCTTCTGGGGGTTGTGAAGAAAGTCATGTAATGTTCCATTGT 2703
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2625 CCTTTTCAGAAAATTTTTTCTTCTGGGGGTTGTGGAGAAAGTCATGTAATGTTCCATTGT 2684
Query 2704 AACCATACGTTTTGTGAGTGTATGATATTTCCCCATCT 2741
|||||| |||||||||||||||| || |||||||||||
Sbjct 2685 AACCATTCGTTTTGTGAGTGTATAATGTTTCCCCATCT 2722
> Ahg938716 jgi|Araly1|938716|scaffold_502907.1
Length=2339
Score = 2220 bits (1202), Expect = 0.0
Identities = 1910/2251 (85%), Gaps = 51/2251 (2%)
Strand=Plus/Plus
Query 331 CGATTCAG-TGAACCCAAAAACTTAGATTTCTCGAC-TTGGTTCTCTGAGAATCTCTCTA 388
|||||| | ||||||||||||| ||||||| || | | |||| || || ||| ||| ||
Sbjct 90 CGATTC-GCTGAACCCAAAAACCTAGATTTTTCTTCATGGGTT-TCCGACAATGTCTATA 147
Query 389 GAATTGCT-GTCTTC-TCTCTCTTAATCGTCACCATAG-TAGCTTTCTTCTTCCTCTACA 445
|||| | | ||||| || ||||| ||||||||| | | | |||||||||||||||||||
Sbjct 148 GAATCG-TAATCTTCTTC-CTCTTCATCGTCACCGTTGCT-GCTTTCTTCTTCCTCTACA 204
Query 446 ACACCACCGACACTGCTTCTCTCCTTTGTTTCCAGTCTCAGTCAACTCAATTTCTTCAAT 505
|||||||||||||||||||||||||||||||||| || || |||||||||| ||||||||
Sbjct 205 ACACCACCGACACTGCTTCTCTCCTTTGTTTCCAATCCCAATCAACTCAATCTCTTCAAT 264
Query 506 CTCTCTCTCGCCCTCAAATCAAATGGAATTCGATCCCAGTCGTC-CCTGATAAAACCTCC 564
||||| |||||||||||||||| ||||| ||||||| | ||||| || || ||||||||
Sbjct 265 CTCTCACTCGCCCTCAAATCAACTGGAACTCGATCCAAATCGTCTCC-GACAAAACCTCA 323
Query 565 CCGTACGCTAATTTCCAG-ACAGAGAAATGGATTGTTGTGTCGGTTACCAAGTACCCAAC 623
|| ||| ||| ||||| | |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 324 CCTTACCCTAGTTTCC-GTACAGAGAAATGGATCGTTGTGTCGGTGACCAAGTACCCAAC 382
Query 624 TGAGGAGCTCAAGAGCTTGGTGAAGATTCGTGGATGGCAGGTTCTAGCTATTGGAAACTC 683
|||||||||||| | ||||| || ||| |||||||| |||||||| |||||||||||
Sbjct 383 AGAGGAGCTCAAGGGTTTGGTCAAAATTAAAGGATGGCAAGTTCTAGCGATTGGAAACTC 442
Query 684 GGCGACACCCAAGGATTGGAGTCTTAAAGGTTCCATCTTTT-TGTCTCTCGATGCTCAAG 742
||||| || ||||||| ||| |||||| | || |||| | ||| | ||||||||||
Sbjct 443 TTTAACACCTAAAGATTGGAATCTCAAAGGTGCGAT-TTTTCTATCTTTAGATGCTCAAG 501
Query 743 CTGAATTGGGTTATCG-AGTTTTAGATCACTTGCCTTATGATTCTTTCGTAAGGAAGAGT 801
|||| || ||| || | |||| ||||| |||||||||||||| |||||| | || |||
Sbjct 502 CTGAGCTGAATTACCGGA-TTTTGGATCATTTGCCTTATGATTCCTTCGTACGCAAAAGT 560
Query 802 GTTGGTTACTTGTTCGCGATCCAGCACGGTGCGAAGAAGATCTATGATGCTGATGATCGT 861
|| ||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||
Sbjct 561 GTCGGTTACTTGTTCGCGATTCAGCATGGTGCAAAGAAGATCTACGATGCAGATGATCGT 620
Query 862 GGTGAAGTGATTGATGGAGATCTAGGCAAGCATTTTGATGTTGAGTTAGTTGGTCTAGAT 921
||||||||||||||||||||||| || || ||||||||||| |||||||| || |||
Sbjct 621 GGTGAAGTGATTGATGGAGATCTTGGGAAACATTTTGATGTAGAGTTAGTAGGAGAAGAC 680
Query 922 TCTAAGCAAGAACCGATTTTGCAGTATAGTCATGAGAACCCCAATAGGACTGTGGTTAAT 981
||| ||||||||| || |||||||||||||| || ||||| ||| | |||||||| |||
Sbjct 681 GCTAGGCAAGAACCAATCTTGCAGTATAGTCACGAAAACCCGAATCGAACTGTGGTGAAT 740
Query 982 CCTTATATTCATTTCGGGCAACGTTCCGTTTGGCCTAGAGGTTTGCCATTAGAGAATGTA 1041
|||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 741 CCTTATATCCATTTCGGGCAACGATCAGTTTGGCCTAGAGGTTTACCATTAGAGAATGTA 800
Query 1042 GGTGAGATCAATCATGAGGAGTATTACACTGAGGTTTTTGGTGGTAAGCAGTTTATACAG 1101
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 801 GGTGAGATCAATCATGAAGAGTATTACACTGAGGTTTTTGGTGGTAAACAGTTTATTCAG 860
Query 1102 CAAGGGATTTCTAACGGTTTACCGGATGTTGATTCGGTGTTTTACTTC-ACTAGGAAGAC 1160
||||||||||| ||||||||||||||||||||||| |||| ||| ||| |||||||||||
Sbjct 861 CAAGGGATTTCGAACGGTTTACCGGATGTTGATTCTGTGTATTA-TTCCACTAGGAAGAC 919
Query 1161 GACTTTAGAAGCTTTTGATATTAGGTTCGATGAGCATTCTCCTAAAGTTGCTTTACCTCA 1220
|||||| ||| | |||||||| || ||||||||||||||||||||||| || || || ||
Sbjct 920 GACTTTCGAACCGTTTGATATCAGATTCGATGAGCATTCTCCTAAAGTGGCGTTGCCACA 979
Query 1221 AGGTGTGATGGTGCCGGTTAATTCGTTTAACACTCTT-TACCATTCGTCAGCCTTTTGGG 1279
|||| |||||||||| || |||||||| |||||| || |||||||| ||||| |||||||
Sbjct 980 AGGTATGATGGTGCCTGTGAATTCGTTCAACACT-TTATACCATTCCTCAGCGTTTTGGG 1038
Query 1280 GGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCTGATGTGCTGAGAGGTTACTGGG 1339
|||||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||
Sbjct 1039 GGTTAATGCTTCCTGTTTCGGTTAGTTCAATGGCTTCGGATGTGATTAGAGGTTACTGGG 1098
Query 1340 GACAAAGGCTTTTGTGGGAGCTTGGTGGTTATGTTGCTGTTTATCCACCTACAGCTCACC 1399
||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 1099 GACAAAGGCTTTTATGGGAGCTTGGTGGTTATGTTGCTGTTTATCCACCAACTGTTCACC 1158
Query 1400 GGTTTGATAGAATCGAGGCTTACCCTTT-TGTAGAGGAGAAGGATCTTCATGTTAATGTT 1458
||| |||| || |||| ||||||||||| | | || ||||| ||||| || || |||||
Sbjct 1159 GGTATGATCGAGTCGAAGCTTACCCTTTCTCT-GATGAGAAAGATCTCCACGTCAATGTC 1217
Query 1459 GGTCGTTTGATCAAGTTCTTACTTGCTTGGAGATCAGAGAAGCATAGTTTCTTTGAGACG 1518
|||||||||||||| ||||| ||||||||||||||| | |||||||| ||||| ||||||
Sbjct 1218 GGTCGTTTGATCAAATTCTTGCTTGCTTGGAGATCAAATAAGCATAGGTTCTTCGAGACG 1277
Query 1519 GTCCTTGATTTGAGCTTTGCTATGGCTGAAGAAGGGTTTTGGACAGAACAGGATTTGAAA 1578
| || ||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct 1278 ATTCTCGATTTGAGCTTTGTTATGGCTGAACAAGGGTTTTGGACAGAACTCGACGTGAAA 1337
Query 1579 TTCACAGCTGCTTGGCTTCAGGATTTGATTGCTGTTGGG-TACCAACAACCGAGATTGAT 1637
||||||||||||||||| ||||||||| || || | || |||||||| || | || ||
Sbjct 1338 TTCACAGCTGCTTGGCTCCAGGATTTGCTTA-TGGTCGGATACCAACAGCCTCGGTTAAT 1396
Query 1638 GTCGCTGGAATTGGATCGCCCGCGAGCAAGTATCGGTCATGGAGATAGAAAAGAGTTTGT 1697
||| || || ||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1397 GTCACTTGAGTTGGACCGCCCACGAGCAACCATCGGTCATGGAGATAGAAAAGAGTTTGT 1456
Query 1698 TCCAAGGAAGTTACCTTCGGTTCATCTCGGGGTTGAGGAGACT-GGCACAGTGAGCACTG 1756
||| ||||| || ||||| ||||| |||||||| ||||||| | |||||||| || |||
Sbjct 1457 TCCTAGGAAATTGCCTTCAGTTCACCTCGGGGTCGAGGAGA-TAGGCACAGTAAGTTCTG 1515
Query 1757 AAATAGGGAACTTGATTAGGTGGAGGAAGAATTTTGGGAATGTTGTGCTGGTTATGTTTT 1816
|||| ||||||||||||| |||||||||||||||||||||||| ||||| | ||||| |
Sbjct 1516 AAATTGGGAACTTGATTAAGTGGAGGAAGAATTTTGGGAATGTAGTGCTTATAATGTTCT 1575
Query 1817 GTAACGGTCCCGTTGAACGTACCGCACTCGAGTGGAGGTTACTTTATGGCCGGATATTCA 1876
||||||| || || ||||| ||||| || || ||||| |||||||| || || |||||||
Sbjct 1576 GTAACGGACCAGTAGAACGCACCGCTCTTGAATGGAGATTACTTTACGGGCGAATATTCA 1635
Query 1877 AAACTGTTGTGATACTT-TCTTCTCAGAA-GAACTCAGATCTCTATGTAGAAGAAGCCAA 1934
|||| || || || || || |||| ||| || ||||||||| || || ||||||| ||
Sbjct 1636 AAACCGTGGTCATT-TTGTCCTCTCGGAAAGA-CTCAGATCTTTACGTCCAAGAAGCTAA 1693
Query 1935 ACTCGATCACATTTACAAGCATCTACCAAAGATATTTGATCGATACAGCAGCGCAGAAGG 1994
|||||||||||||||||||| ||||| |||||||||||||| || ||||||||||| ||
Sbjct 1694 ACTCGATCACATTTACAAGCGGCTACCGAAGATATTTGATCGGTATAGCAGCGCAGACGG 1753
Query 1995 ATTTTTGTTTGTTGAAGATGATACAGTTCTCAATTACTGGAATCTACTTCAAGCTGACAA 2054
||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |||||
Sbjct 1754 ATTTTTGTTTGTTGAAGATGATACAATTCTTAATTACTGGAATTTACTTCAAGCCGACAA 1813
Query 2055 ATCTAAGATTTGGACTACAGACAAGGTATCAAAGTCTTGGACATCAGTGAAACCGACC-G 2113
| ||||| | |||||||||||||||||| | |||| |||||| |||||| | | | | |
Sbjct 1814 AACTAAGCTCTGGACTACAGACAAGGTAACGGAGTCATGGACAACAGTGAGAGC-AGCTG 1872
Query 2114 GGAACT-CTGATTGGTTTTCTGTACAAGCAGAGTTAGTGAAGAAAACTGTAAGTACAATG 2172
|||| | ||||||||| ||| || || || || ||||| ||||||| ||| |||||||||
Sbjct 1873 GGAA-TGCTGATTGGTATTCGGTTCAGGCGGAATTAGTAAAGAAAATTGTCAGTACAATG 1931
Query 2173 CCAGCTCATTTCCAAGTTAACTACAAGGACGCCACCAAGAACAATC-ATGAGA---CCTT 2228
|| | |||||||||||| || |||||||| ||||| ||||| | | |||| | ||||
Sbjct 1932 CCGGTTCATTTCCAAGTCAATTACAAGGAAGCCACAAAGAAGAC-CGATGACAAAACCTT 1990
Query 2229 AAC-AGTATGCAGTTCAGAGGTATTCTATGTGCCTAAAAGACTG-GTAACTGACTTTATC 2286
| | ||||| || || || |||||||| |||||| | || || | ||||||| |
Sbjct 1991 TTTGA-TGTGCAGCTCTGAAGTGTTCTATGTCCCTAAACG-CTTTGTCTCGGACTTTA-C 2047
Query 2287 -GATCTTGTTGATCTCGTGGGCGATATGGACTTGCATTACAAAGTGGCTGTGCCAATGTT 2345
||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2048 AGATCTTGTTAATCTCGTGGGCGATATGGATTTGCATTACAAAGTGGCTGTGCCTATGTT 2107
Query 2346 CTTCTTGTCTATGGATTCGCCTCAGAATTTTGACCCGGTTCTCGGTTCAATGGTATATAA 2405
|||| | || ||||||||||||||||||||||||||||| || || || ||||| || ||
Sbjct 2108 CTTCCTATCGATGGATTCGCCTCAGAATTTTGACCCGGTCCTAGGCTCGATGGTTTACAA 2167
Query 2406 GA-GGAAATCAGCTTCGTTTAACACTTCTTCGAGTCTGTATTCTGCTAAAGCACCTGCGG 2464
| |||| ||||||| || ||| |||||| |||| ||||||| || ||||||||||||
Sbjct 2168 GTCGGAAC-CAGCTTCATTAAACTCTTCTTTGAGTTTGTATTCAGCGGAAGCACCTGCGG 2226
Query 2465 TTCACCCGTGGAGCATATCAAGCGAACAAGATTTCATCAAATTGGTTCAGCAA-ATGGCT 2523
|||| || |||||||| || ||||||||||||||||| ||||||||| || | |||||
Sbjct 2227 TTCATCCTTGGAGCATTTCGAGCGAACAAGATTTCATTAAATTGGTT-AGGGAGATGGCG 2285
Query 2524 GAGGGCGACCCGCTTCTGATGGAGTTGGTAT 2554
|| ||||| |||||| ||||||| |||||||
Sbjct 2286 GAAGGCGATCCGCTTTTGATGGAATTGGTAT 2316
> Ahg935010 jgi|Araly1|935010|scaffold_402998.1
Length=737
Score = 809 bits (438), Expect = 0.0
Identities = 540/585 (92%), Gaps = 23/585 (4%)
Strand=Plus/Plus
Query 1553 GGTTTTGGACAGAACAGGATTTGAAATTCACAGCTGCTTGGCTTCAGGATTTGATTGCTG 1612
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GGTTTTCGACAGAACAGGATTTGAAATTCACAGCTGCTTGGCTTCAGGATTTGATTGCTG 223
Query 1613 TTGGGTACCAACAACCGAGATTGATGTCGCTGGAATTGGATCGCCCGCGAGCAAGTATCG 1672
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 224 TTGGGTACCAACAACCGAGATTGATGTCGCTGGAACTGGATCGCCCGCGAGCAAGTTTCG 283
Query 1673 GTCATGGAGATAGAAAAGAGTTTGTTCCAAGGAAGTTACCTTCGGTTCATCTCGGGGTTG 1732
||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 284 GTCATGGAGATAGAAGAGAGTTTGTTCCAAGGAATTTGCCTTCGGTTCATCTCGGGGTTG 343
Query 1733 AGGAGACTGGCACAGTGAGCACTGAAATAGGGAACTTGATTAGGTGGAGGAAGAATTTTG 1792
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AGGAGACCGGCACAGTGAGCACTGAAATAGGGAACTTGATTAGGTGGAGGAAGAATTTTG 403
Query 1793 GGAATGTTGTGCTGGTTATGTTTTGTAACGGTCCCGTTGAACGTACCGCACTCGAGTGGA 1852
|||||||| | || ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 404 GGAATGTTTTACTTGTTGTGTTTTGTAACGGTCCCGTTGAACGCACCGCACTCGAGTGGA 463
Query 1853 GGTTACTTTATGGCCGGATATTCAAAACTGTTGTGATACTT-TCTTCTCAGAAGAACTCA 1911
|||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 464 GGTTACTTTACGGCCGCATATTCAAAACTGTTGTGATA-TTGTCTTCTCAGAAGAACTCA 522
Query 1912 GATCTCTATGTAGAAGAAGCCAAACTCGATCACATTTACAAGCATCTACCAAAGATATTT 1971
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 523 GATCTCTATGTCGAAGAAGCCAAACTCGATCACATATACAAGCATCTACCGAAGATATTT 582
Query 1972 GATCGATACAGCAGCGCAGAAGGATTTTTGTTTGTTGAAGATGATACAGTTCTCAATTAC 2031
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 583 GATAGATACAGCAGCGCAGAAGGATTTTTGTTTGTTGAAGATGATACAATTCTCAATTAC 642
Query 2032 TGGAATCTACTTCAAGCTGACAAATCTAAGATTTGGACTACAGA--CAAGGTATCAAAGT 2089
||||||||| | | | | | | || ||||||| ||||||||||||||
Sbjct 643 TGGAATCTA----A-GAT------T-T--G----GG-CTACAGAGACAAGGTATCAAAGT 683
Query 2090 CTTGGACATCAGTGAAACCGACCGGGAACTCTGATTGGTTTTCTG 2134
| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 684 CATGGACGTCAGTGAAACCGACCGGGAACTCTGATTGGTTTTCTG 728
Score = 246 bits (133), Expect = 6e-64
Identities = 143/148 (97%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 1264 TCGTCAGCCTTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCTGATGTG 1323
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGTCGGCCTTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCTGATGTG 60
Query 1324 CTGAGAGGTTACTGGGGACAAAGGCTTTTGTGGGAGCTTGGTGGTTATGTTGCTGTTTAT 1383
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TTGAGAGGTTACTGGGGACAAAGGCTTCTGTGGGAGCTTGGTGGTTATGTTGCTGTTTAT 120
Query 1384 CCACCTACAGCTCACCGGTTTGATAGAA 1411
|||||||| |||||||| ||||||||||
Sbjct 121 CCACCTACGGCTCACCGATTTGATAGAA 148
> Ahg935009 jgi|Araly1|935009|scaffold_402997.1
Length=409
Score = 555 bits (300), Expect = 8e-157
Identities = 342/362 (94%), Gaps = 3/362 (1%)
Strand=Plus/Plus
Query 760 GTTTTAGATCACTTGCCTTATGATTCTTTCGTAAGGAAGAGTGTTGGTTACTTGTTCGCG 819
||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 28 GTTCTA-ATCACTTGCCTTATGATTCTTTCGTGCGGAAGAGTGTTGGTTACTTGTTCGCG 86
Query 820 ATCCAGCACGGTGCGAAGAAGATCTATGATGCTGATGATCGTGGTGAAGTGATTGATGGA 879
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 87 ATACAGCACGGTGCGAAGAAGATCTACGATGCGGATGATCGTGGTGAAGTGATTGATGGA 146
Query 880 GATCTAGGCAAGCATTTTGATGTTGAGTTAGTTGGTCTAGATTCTAAGCAAGAACCGATT 939
|||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 147 GATCTAGGGAAGCATTTTGATGTTGAGTTAGTTGGTGTAGATTCTAAGCAACAACCTATT 206
Query 940 TTGCAGTATAGTCATGAGAACCCCAATAGGACTGTGGTTAATCCTTATATTCATTTCGGG 999
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 207 TTGCAGTATAGTCATGAGAACTCCAATAGGACTGTGGTTAATCCTTATATTCATTTCGGG 266
Query 1000 CAACGTTCCGTTTGGCCTAGAGGTTTGCCATTAGAGAATGTAGGTGAGATCAATCATGAG 1059
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 267 CAACACTCGGTTTGGCCTAGAGGATTGCCATTAGAGAATGTAGGTGAGATCAATCATGAG 326
Query 1060 GAGTATTACACTGAGGTTTTTGGTGGTAAGCAGTTTATACAGCAAGGGA-TTTCTAACGG 1118
|||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||
Sbjct 327 GAGTATTACACTGAGGTTTTTGGTGGTACGCAGTTTATACAGCA-GGGAATTTCTAATGG 385
Query 1119 TT 1120
||
Sbjct 386 TT 387
Score = 62.1 bits (33), Expect = 2e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 637 AGCTTGGTGAAGATTCGTGGATGGCAGGTTCTA 669
|||||||||||||||||||||||||||||||||
Sbjct 1 AGCTTGGTGAAGATTCGTGGATGGCAGGTTCTA 33
> Ahg935008 jgi|Araly1|935008|scaffold_402996.1
Length=244
Score = 407 bits (220), Expect = 2e-112
Identities = 232/238 (97%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 227 GCTTTATTGATCCAATGTTGGTTCAGGATCGTGCGGCGCCTTCTCCTGCCAAGCCGCCGA 286
||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 7 GCTTTTTTGATCCGATGTTGGTTCAGGATCGTGCGGCGTCTTCTCCTGCCAAGCCGCCGA 66
Query 287 AATCTCAGATCAGAGAACTACCTACTCATCAACAGATCCGACGACGATTCAGTGAACCCA 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 AATCTCAGATCAGAGAACTACCTACTCATCAACAGATCCGACGACGATTCAGTGAACCCA 126
Query 347 AAAACTTAGATTTCTCGACTTGGTTCTCTGAGAATCTCTCTAGAATTGCTGTCTTCTCTC 406
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 127 AAAACCTAGATTTCTCGACTTGGTTCTCTGAGAATCTCTCCAGAATTGCTGTCTTCTCTC 186
Query 407 TCTTAATCGTCACCATAGTAGCTTTCTTCTTCCTCTACAACACCACCGACACTGCTTC 464
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 187 TCTTAATCGTCACCATAGTAGCTCTCTTCTTCCTCTACAACACCACCGACACTGCTTC 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103643556645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5