BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G41780.1

Length=715
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935030 jgi|Araly1|935030|scaffold_403018.1                        340    6e-93


> Ahg935030 jgi|Araly1|935030|scaffold_403018.1
Length=506

 Score =  340 bits (184),  Expect = 6e-93
 Identities = 335/401 (84%), Gaps = 38/401 (9%)
 Strand=Plus/Plus

Query  60   ATGGACGACAAGACGGCGGGTGGTAAGATTGTCATGAATAAGGAGCAACTGCTTTTGTTT  119
            ||||||||  |||||| |   ||||||||| |||||||||||||||||||||||||||||
Sbjct  22   ATGGACGATGAGACGGAGAACGGTAAGATTATCATGAATAAGGAGCAACTGCTTTTGTTT  81

Query  120  ATGGAAAACAGGCGGAAGCAGGAGGATCACCGTCTCGCTCTCGCCAAGGAAGCCACCAGA  179
            |||||||||||||||||||||||||||||||||||||| | |  ||||||||||||||||
Sbjct  82   ATGGAAAACAGGCGGAAGCAGGAGGATCACCGTCTCGC-C-C-TCAAGGAAGCCACCAGA  138

Query  180  TCTGAGATGGTTGACC-----------G----GAAGGCCAGCGGTAAGATAATCATG---  221
            |||| |||||||||||           |    |||||||||||||||||||||||||   
Sbjct  139  TCTGCGATGGTTGACCGGAAGGGGATGGTTTCGAAGGCCAGCGGTAAGATAATCATGAAT  198

Query  222  -A--ATCATGATCAGCAGCTTATGTTTAACGAGGATCACCGTCTCGCCGTCAAGAAAGCC  278
             |  ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct  199  AATGATCATGATCAGCAGCTTATGTTTGAGGAGGATCATCGTCTCGCCGTCAAGAAAGCC  258

Query  279  AGCAGATCTGAGATGGTTGA-C-----CTGGAGGGGATGGGTTCGGAGGCGAG-TGTAAT  331
            | |||||||||||||||||| |     ||||||||||| | |||| ||||||| | ||||
Sbjct  259  ACCAGATCTGAGATGGTTGACCGGGAGCTGGAGGGGATAGTTTCGAAGGCGAGCT-TAAT  317

Query  332  AATGAGTAATGTTCCACAGCCAACTTCTTTTAGCGAGGATCACAAGCTCGCCATCAAGAA  391
             |||| ||||||||||| ||| |   |||||| |||||| ||||  ||||||||||||||
Sbjct  318  CATGAATAATGTTCCACGGCC-A--GCTTTTAACGAGGAACACATTCTCGCCATCAAGAA  374

Query  392  CATCATATCTAAGATT--G-TCAAGGAGATCCGCGATAGAG  429
            |||||||||| |||||  | | |||| || |||||||||||
Sbjct  375  CATCATATCTGAGATTATGATGAAGGCGAGCCGCGATAGAG  415


 Score = 73.1 bits (39),  Expect = 3e-12
 Identities = 53/59 (90%), Gaps = 3/59 (5%)
 Strand=Plus/Plus

Query  139  AGGAGGATCACCGTCTCGCTCTCGCCAAGGAAGCCACCAGATCTGAGATGGTTGACCGG  197
            |||||||||| |||||||  | || |||| |||||||||||||||||||||||||||||
Sbjct  227  AGGAGGATCATCGTCTCG--C-CGTCAAGAAAGCCACCAGATCTGAGATGGTTGACCGG  282



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26304812730


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5