BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41800.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483261 jgi|Araly1|483261|fgenesh2_kg.4__2321__AT2G41800.1 1746 0.0
Ahg483262 jgi|Araly1|483262|fgenesh2_kg.4__2322__AT2G41810.1 688 0.0
> Ahg483261 jgi|Araly1|483261|fgenesh2_kg.4__2321__AT2G41800.1
Length=1187
Score = 1746 bits (945), Expect = 0.0
Identities = 1105/1184 (93%), Gaps = 4/1184 (0%)
Strand=Plus/Plus
Query 1 ATTGATATAGGCGAACTAATTAATAAGACTTTAAAATGTCTCTCTATCACTCTCTTAGCA 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTGATATAGGCGAACTAATTGATAAGACTTTAAAATGTCTCTCTATCACTCTCTTAGCC 60
Query 61 TTTTCCTCCTCCTATCTCTCTGCCATGGCTCTTACAGTCTTCAACCACGTCGAGTTCCTC 120
|||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTTTCCTCCTTTTCTCTCTCTGCCATGGCTCTTACAGTCTCCAACCACGTCGAGTTCCTC 120
Query 121 ATCTAGACGGGATTCTCCCAAATGGAAACTTCGAG-ATAACCCCTCTCAAATCAAACATG 179
||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 121 ATCTAGACGGGCTTCTCCCAAATGGAAACTTCGAGCA-AACCCCTCTCAAATCAAACATG 179
Query 180 AAGGGTCGACAAATAATCGGGGCTAACTCTCTTCCTCATTGGGAAATCGCCGGGCACGTG 239
|||||||||||||||||||| ||||||||||||||||| ||| |||||| ||| ||| ||
Sbjct 180 AAGGGTCGACAAATAATCGGCGCTAACTCTCTTCCTCACTGGCAAATCGGCGGCCACATG 239
Query 240 GAGCTAGTCTCCGGTGGACCTCAGCCTGGAGGATTCTATTTCCCCGTTCCACGTGGAGTC 299
||| ||||||||||||| |||||||| |||||||||||||| || || ||||||||||||
Sbjct 240 GAGTTAGTCTCCGGTGGGCCTCAGCCCGGAGGATTCTATTTTCCGGTCCCACGTGGAGTC 299
Query 300 CACGCGGTTAGACTCGGAAACTTGGGCACCATCTCTCAGAACGTGAGGGTGAAGAGTGGT 359
|||||| ||||| | |||| |||||| |||||||||||| ||||||| ||||||||||||
Sbjct 300 CACGCGATTAGAATAGGAAGCTTGGGGACCATCTCTCAGGACGTGAGAGTGAAGAGTGGT 359
Query 360 TTGGTCTACTCTCTAACGTTCGGAGCTACGAGGACTTGTGCTCAGGATGAGAACATCAAA 419
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 360 TTGGTCTACTCTCTCACGTTCGGAGCCACGAGGACTTGCCCTCAGGATGAGAACATCAAA 419
Query 420 GTCTCTGTGCCTGGTCAGGCCAATGAGCTTCCGCTCCAGACCGTCTTTAGCTCCGACGGT 479
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GTCTCAGTGCCTGGTCAGGCCAATGAGCTTCCGATCCAGACCGTCTTTAGCTCCGACGGT 479
Query 480 GGAGACACTTACGCTTGGGCTTTCAAGGCAACT-TCTGATGTGGTTAAGGTCACTTTCCA 538
||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 480 GGAGACACTTACGCTTGGGCTTTCAAGGCAA-TGTCCGATGTGGTTAAGGTCACTTTCCA 538
Query 539 TAACCCTGGTGTTCAAGAAGACCGCACGTGTGGACCTCTCTTAGATGTTGTCGCAATCAA 598
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 TAACCCTGGTGTTCAAGAGGACCGCACGTGTGGACCTCTCTTAGATGTTGTCGCTATCAA 598
Query 599 GGAGATTCTTCCTCTCCGGTATACCAGAGGAAACTTGGTGAAAAATGGAGGATTCGAGAT 658
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 GGAGATTCTTCCTCTCCGGTATACCAGAGGAAACTTGGTGAAAAACGGAGGATTCGAGAT 658
Query 659 CGGTCCACATGTTTTCGCTAATTTCTCAACCGGAATCTTGATTCCAGCAAGAATCCAAGA 718
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 TGGTCCACACGTTTTCGCTAATTTCTCAACCGGAATCTTGATTCCGGCAAGAATCCAAGA 718
Query 719 CTTCATCTCTCCTCTTCCGGGATGGATCGTCGAATCCCTTAAACCAGTGAAGTATATCGA 778
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 719 CTTTATCTCTCCTCTTCCGGGATGGATCGTCGAATCCCTTAAGCCAGTGAAGTACATCGA 778
Query 779 TAGACGTCATTTCAAAGTTCCTTATGGACAAGGGGCCGTCGAGCTAGTTGCCGGAAGAGA 838
||||||||||||||| ||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 779 TAGACGTCATTTCAAGGTTCCTTATGGACAAGGCGCCGTAGAACTAGTCGCCGGAAGAGA 838
Query 839 AAGCGCAATAGCTCAGATCATCCGAACCATCGCTGGTAAAGCCTATATGCTCTCATTCGC 898
||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 839 AAGTGCAATCGCTCAGATCATCCGAACCATCGCTGGTAACGCCTACATTCTCTCGTTCGC 898
Query 899 GGTTGGTGATGCACAAAACGGTTGCCACGGGTCGATGATGGTGGAAGCGTTCGCAGGAAG 958
||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 GGTCGGCGATGCGCAAAACGGTTGCCACGGGTCTATGATGGTGGAAGCGTTCGCAGGAAG 958
Query 959 AGAACCGTTTAAGCTTTCTTTTATGTCAGAAGGTAAAGGAGCGTTCAAAACAGGGCATTT 1018
||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGAGCCATTTAAACTTCCTTTTATGTCAGAAGGTAAAGGAGCGTTCAAAACAGGGCATTT 1018
Query 1019 TAGGTTTGTTGCTGATTCGGATCGAACGAGGCTAACGTTTTATAGTGCGTTTTATCATAC 1078
|||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 1019 TAGGTTTGTTGCTGATTCAAATCGAACGAGGCTAACATTTTATAGTGCATTTTATCATAC 1078
Query 1079 AAAGCTTCATGACTTCGGCCATCTTTGTGGGCCTGTTCTTGATAGCGTTGTTGTTACCCT 1138
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1079 TAAGCTTCATGATTTCGGCCATCTTTGTGGGCCTGTTCTTGATAGCGTCGTTGTTACCCC 1138
Query 1139 GGCCCGTTAACAATTTGTGGCTTTTAATTCTTATTAGACTGAAT 1182
||||||||| || |||||||| |||||| |||| |||||||||
Sbjct 1139 AGCCCGTTAATAAATTGTGGCTCTTAATTTTTATCAGACTGAAT 1182
> Ahg483262 jgi|Araly1|483262|fgenesh2_kg.4__2322__AT2G41810.1
Length=1144
Score = 688 bits (372), Expect = 0.0
Identities = 837/1056 (79%), Gaps = 54/1056 (5%)
Strand=Plus/Plus
Query 119 TCATCTAGACGGGATTCTCCCAAATGGAAACTTCGAGATAACCCCTCTCAAATCAAACAT 178
|||||| || ||| |||| |||||||| |||| |||| || ||| ||||||||||||
Sbjct 114 TCATCTTGATGGGCTTCTTCCAAATGGGGACTTTGAGAAAATTCCTAACAAATCAAACAT 173
Query 179 GA-AGGGTCGACAAATAATCGGGGC-TA-ACTCTCTTCCTCATTGGGAAATCGCCGGGCA 235
|| | | |||||||||| ||| | |||||||||| |||||||||||| | || ||
Sbjct 174 GAGAAAG-AGACAAATAAT--TGGCAAATACTCTCTTCCCCATTGGGAAATCTCTGGCCA 230
Query 236 CGTGGAGCTAGTCTCCGGTGGACCTCAGCCTGGAGGATTCTATTTCCCCGTTCCACGTGG 295
||| ||| |||||||||| || || ||||| || || ||||||||| | || ||||||||
Sbjct 231 CGTCGAGTTAGTCTCCGGCGGTCCACAGCCGGGCGGTTTCTATTTCGCGGTGCCACGTGG 290
Query 296 AGTCCACGCGGTTAGACTCGGAAACTTGGGCA-CCATCTCTCAGA-ACGTGAGGGTGAAG 353
||||||||| | ||| || |||||||| ||| | || ||||| | | || | |||||
Sbjct 291 AGTCCACGCAGCTAGGCTAGGAAACTT-AGCATCAATATCTCA-ATATGTTAAAGTGAA- 347
Query 354 A-GTGGTTTGGTCTACTCTCTAACGTTCGGAGCT-ACGAGGACTTGTGCTCAGGATGAGA 411
| |||| |||||||| ||| ||||||| || | | ||||||||||||||||| || ||||
Sbjct 348 ACGTGGCTTGGTCTATTCTTTAACGTTTGGTG-TCACGAGGACTTGTGCTCAAGACGAGA 406
Query 412 ACATCA-AAGTCTCTGTGCCTGGTCAGGCCAATGAGCTTCCGCTCCAGACCGTCTTTAGC 470
|||||| || |||||||||| |||||| |||||||||| || |||| || | || ||
Sbjct 407 ACATCAGAA-TCTCTGTGCCCGGTCAGACCAATGAGCTACCAATCCAAACATTGTTCAG- 464
Query 471 T-CCGACGGTGGAGACACTTACGCTTGGGCTTTCAAGGCAACTTCTGATGTGGTTAAGGT 529
| || | ||||| || || |||||||||||||| |||||||| |||||| ||||||||||
Sbjct 465 TACCAATGGTGGTGATACGTACGCTTGGGCTTTTAAGGCAACGTCTGATTTGGTTAAGGT 524
Query 530 CACTTTCCATAACCCTGGTGTTCAAGAAGA-CCGCACGTGTGGACCTCTC-TTAGATGTT 587
|||||||||||| ||||||||||| ||||| || ||| ||||| || || || || | |
Sbjct 525 CACTTTCCATAATCCTGGTGTTCAGGAAGATCC-CACTTGTGGCCCAATCGTT-GACGCT 582
Query 588 GTCGCAATCAAGGAGATTCTTCCTCTCCGGTATACCAGAGGAAAC-TTGGTGAAAAATGG 646
|| || || |||||||||||||||||||||||||||| ||||||| ||| ||||||| ||
Sbjct 583 GTTGCCATTAAGGAGATTCTTCCTCTCCGGTATACCAAAGGAAACCTTG-TGAAAAACGG 641
Query 647 AGGATTCGAGATCGGTCCACATGTTTTC-GCTAA-TTTCTCAACCGGAATCTTGATTCCA 704
||||| |||| ||||||||| || ||| || || ||| || |||||||| || |||||
Sbjct 642 CGGATTTGAGACCGGTCCACACGTATTCAGC-AACTTT-TCTACCGGAATTTTAATTCCG 699
Query 705 GC-AAGAATCCAAGACTTCATCTCTCCTCTTCCGGGATGGATCGTCGAATCCCTTAAACC 763
|| |||| | |||||| | || || || ||||||||||||||||||||||| || |||||
Sbjct 700 GCTAAGA-TACAAGACCTAATTTCACCGCTTCCGGGATGGATCGTCGAATCTCTAAAACC 758
Query 764 AGTGAAGTATATCGATAGAC-GTCATTTCAAAGTTCCTT-ATGGACAAGGGGCCGTCGAG 821
|| ||||| ||||||| || | || ||||| || || | | |||| | || |||||
Sbjct 759 GGTCAAGTACATCGATA-ACCGCCACTTCAAGGTCCCCTCA-GGACTCGCCGCAATCGAG 816
Query 822 CTAGT-TGCCGGAAGAGAAAGCGCAATAGCTCAGATCATCCGAACCATCGCTGGTA-AAG 879
|| || | ||||||||||||| || || |||||||||||||| ||| || | |||| ||
Sbjct 817 CTCGTCT-CCGGAAGAGAAAGTGCCATCGCTCAGATCATCCGTACCGTCTCCGGTAGAAA 875
Query 880 CCTATATGCTCTCATTCGCGGTTGGTGATGCACAAAACGGTTGCCACGGGTCGATGATGG 939
| || || ||||||||||||||||| || || || || ||||| ||||| ||||||||||
Sbjct 876 C-TACATTCTCTCATTCGCGGTTGGAGACGCGCACAATGGTTGTCACGGATCGATGATGG 934
Query 940 TGGAAGCGTTCGCAGGAAGAGAAC--CGTTTAAGCTTTCTTTT-ATGTCAGAAGG-TAAA 995
|||| ||||| | |||| | | | |||||||| || | || | || || | ||||
Sbjct 935 TGGAGGCGTTTGTGGGAA-A-ATCGGCGTTTAAGGTTGCGTTCGAA-TCT-AATGATAAA 990
Query 996 GGAGCGTTCAAAACAGGGCATTTTAGGTTT-GTTGCTGATTCGGATCGAACGAGGCTAAC 1054
|||||||||||| | |||| ||| | |||| | || |||||| |||| |||||| ||||
Sbjct 991 GGAGCGTTCAAAGCGGGGCGTTTCACGTTTCGG-GCCGATTCGAATCGCACGAGGATAAC 1049
Query 1055 GTTT-TATAGTGCGTTTTATCATACAAAGCTTCATGACTTCGGCCATCTTT-GTGGGCCT 1112
||| ||||||| |||||||||||| ||||||||||| || || || |||| |||||||
Sbjct 1050 -TTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACA-CTTTTGTGGGCCG 1107
Query 1113 GTTCTTGATAGCGTT-GTTGTTACCCTGGCCCGTTA 1147
|| ||||||| ||| | ||| |||||||| |||
Sbjct 1108 GTACTTGATAATGTTAGG-GTTTTCCTGGCCCATTA 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5