BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41810.1 Length=1207 Score E Sequences producing significant alignments: (Bits) Value Ahg483262 jgi|Araly1|483262|fgenesh2_kg.4__2322__AT2G41810.1 1700 0.0 Ahg483261 jgi|Araly1|483261|fgenesh2_kg.4__2321__AT2G41800.1 680 0.0 > Ahg483262 jgi|Araly1|483262|fgenesh2_kg.4__2322__AT2G41810.1 Length=1144 Score = 1700 bits (920), Expect = 0.0 Identities = 1059/1127 (94%), Gaps = 6/1127 (1%) Strand=Plus/Plus Query 43 TAAAAGCTCACAATGTCTCTCGTTCTCTCTCTTTGCTTGGTCTTCCTTTGTTCTCTTGTT 102 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 19 TAAATGCTCACAATGTCTCTCGTTCTCTCTCTTTGCTTGGCCTTCCTTTGTTCTTTTGTT 78 Query 103 CATGGTTCTCATAGCTTACCAGCACAACGGACTCCTCATCTTGATGGGCTTCTCCCAAAT 162 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 79 CATGGTTCTCATAGCTTACCAGCACAACGGACTCTTCATCTTGATGGGCTTCTTCCAAAT 138 Query 163 GGGAACTTTGAGCAAATTCCTAACAAATCAAACATGAGAAAGAGGCAAATAATTGGCAAA 222 ||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 139 GGGGACTTTGAGAAAATTCCTAACAAATCAAACATGAGAAAGAGACAAATAATTGGCAAA 198 Query 223 TACTCTCTTCCACATTGGGAAATCTCCGGCCACGTAGAGCTAGTCTCTGGCGGTCCACAG 282 ||||||||||| |||||||||||||| |||||||| ||| ||||||| |||||||||||| Sbjct 199 TACTCTCTTCCCCATTGGGAAATCTCTGGCCACGTCGAGTTAGTCTCCGGCGGTCCACAG 258 Query 283 CCCGGTGGTTTTTACTTCGCAGTGCCACGTGGAGTCCACGCAGCTAGGCTAGGGAACTTA 342 || || ||||| || ||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 259 CCGGGCGGTTTCTATTTCGCGGTGCCACGTGGAGTCCACGCAGCTAGGCTAGGAAACTTA 318 Query 343 GCATCAATATCTCAGTATGTGAAAGTGAAAAGCGGCTTGGTCTATTCTCTAACGTTTGGT 402 |||||||||||||| ||||| ||||||||| | ||||||||||||||| ||||||||||| Sbjct 319 GCATCAATATCTCAATATGTTAAAGTGAAACGTGGCTTGGTCTATTCTTTAACGTTTGGT 378 Query 403 GTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAATCTCTGTGCCTGGTCAGACCAAT 462 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 379 GTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAATCTCTGTGCCCGGTCAGACCAAT 438 Query 463 GAGCTACCAATCCAAACATTGTTCAGTACCAACGGTGGTGATACGTACGCATGGGCTTTT 522 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 439 GAGCTACCAATCCAAACATTGTTCAGTACCAATGGTGGTGATACGTACGCTTGGGCTTTT 498 Query 523 AAGGCAACGTCTGACTTGGTTAAGGTCACTTTTTATAATCCTGGTGTTCAAGAAGA-CCC 581 |||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||| Sbjct 499 AAGGCAACGTCTGATTTGGTTAAGGTCACTTTCCATAATCCTGGTGTTCAGGAAGATCCC 558 Query 582 TACTTGTGGCCCAATCGTTGACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCGGTATAC 641 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 559 -ACTTGTGGCCCAATCGTTGACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCGGTATAC 617 Query 642 CAAAGGGAACCTTGTGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCAGCAACTT 701 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 CAAAGGAAACCTTGTGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCAGCAACTT 677 Query 702 CTCTACCGGAATTTTAATTCCGGCGAAGATACAAGACCTAATCTCACCGCTTCCGGGATG 761 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 678 TTCTACCGGAATTTTAATTCCGGCTAAGATACAAGACCTAATTTCACCGCTTCCGGGATG 737 Query 762 GATCGTCGAATCTCTAAAACCGGTTAAGTACATCGATAACCGCCACTTCAAGGTTCCCTC 821 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 738 GATCGTCGAATCTCTAAAACCGGTCAAGTACATCGATAACCGCCACTTCAAGGTCCCCTC 797 Query 822 AGGTCTCGCAGCAATCGAGCTTGT-TGCCGGAAGAGAAAGCGCAATCGCTCAGATCATCC 880 ||| ||||| ||||||||||| || | ||||||||||||| || |||||||||||||||| Sbjct 798 AGGACTCGCCGCAATCGAGCTCGTCT-CCGGAAGAGAAAGTGCCATCGCTCAGATCATCC 856 Query 881 GTACCGTCTCCGGTAAAAACTACATTCTCTCGTTTGTTGTGGGAGACGCACACAATGGTT 940 ||||||||||||||| ||||||||||||||| || | || |||||||| |||||||||| Sbjct 857 GTACCGTCTCCGGTAGAAACTACATTCTCTCATTCGCGGTTGGAGACGCGCACAATGGTT 916 Query 941 GTCACGGATCGATGATGGTGGAGGCGTTTGCGGGAATATCGGCGTTTAAGGTTACATTCG 1000 |||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||| Sbjct 917 GTCACGGATCGATGATGGTGGAGGCGTTTGTGGGAAAATCGGCGTTTAAGGTTGCGTTCG 976 Query 1001 AATCTAATGATAAAGGAGCGTTCAAAGTGGGGCGTTTCGCGTTTCGTGCCGATTCGAATC 1060 ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| Sbjct 977 AATCTAATGATAAAGGAGCGTTCAAAGCGGGGCGTTTCACGTTTCGGGCCGATTCGAATC 1036 Query 1061 GCACAAGGATAACTTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACATC 1120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1037 GCACGAGGATAACTTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACA-C 1095 Query 1121 TTT-GTGGGCCTGTGCTTGATAATGTTAGTGtttttttGGCCCATTA 1166 ||| ||||||| || |||||||||||||| ||||| |||||||||| Sbjct 1096 TTTTGTGGGCCGGTACTTGATAATGTTAGGGTTTTCCTGGCCCATTA 1142 > Ahg483261 jgi|Araly1|483261|fgenesh2_kg.4__2321__AT2G41800.1 Length=1187 Score = 680 bits (368), Expect = 0.0 Identities = 877/1117 (79%), Gaps = 58/1117 (5%) Strand=Plus/Plus Query 54 AATGTCTCTCGT-TCTCTCTCTTTG-CTTGGTCTTCCTTTGT-TCTCT-TGTTCATGGTT 109 |||||||||| | || ||||||| | ||| || |||||| | ||||| || ||||| | Sbjct 35 AATGTCTCTC-TATCACTCTCTTAGCCTT-TTCCTCCTTT-TCTCTCTCTG-CCATGGCT 90 Query 110 CTCATAGCT-TACC-AGCACAACGGA-CTCCTCATCTTGATGGGCTTCTCCCAAATGGGA 166 || | || | | || | ||| | || ||||||||| || ||||||||||||||||| | Sbjct 91 CTTACAG-TCT-CCAACCACGTC-GAGTTCCTCATCTAGACGGGCTTCTCCCAAATGGAA 147 Query 167 ACTTTGAGCAAATTCCTAACAAATCAAACATGAGAAAG-AGGCAAATAATTGGCAAAT-A 224 |||| ||||||| ||| |||||||||||||| | | | |||||||| ||| | | Sbjct 148 ACTTCGAGCAAACCCCTCTCAAATCAAACATGA-AGGGTCGACAAATAATCGGC-GCTAA 205 Query 225 CTCTCTTCCACATTGGGAAATCTCCGGCCACGTAGAGCTAGTCTCTGGCGGTCCACAGCC 284 ||||||||| || ||| ||||| ||||||| | ||| ||||||| || || || ||||| Sbjct 206 CTCTCTTCCTCACTGGCAAATCGGCGGCCACATGGAGTTAGTCTCCGGTGGGCCTCAGCC 265 Query 285 CGGTGGTTTTTA-CTTCGCAGTGCCACGTGGAGTCCACGCAG-CTAGGCTAGGGAA-CTT 341 ||| || || || ||| | || ||||||||||||||||| | ||| || |||| ||| Sbjct 266 CGGAGGATTCTATTTTC-CGGTCCCACGTGGAGTCCACGC-GATTAGAATA-GGAAGCTT 322 Query 342 -AGCATCAATATCTCAGTATGTGAAAGTGAAAAGCGGCTTGGTCTATTCTCTAACGTTTG 400 | | | || |||||| | |||| |||||| || || |||||||| ||||| ||||| | Sbjct 323 GGGGA-CCATCTCTCAGGACGTGAGAGTGAAGAGTGGTTTGGTCTACTCTCTCACGTTCG 381 Query 401 GTGTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAA-TCTCTGTGCCTGGTCAGACC 459 | | |||||||||||| |||| || |||||||||| || |||| |||||||||||| || Sbjct 382 GAGCCACGAGGACTTGCCCTCAGGATGAGAACATCA-AAGTCTCAGTGCCTGGTCAGGCC 440 Query 460 AATGAGCTACCAATCCAAACATTGTTCAG-TACCAACGGTGGTGATACGTACGCATGGGC 518 |||||||| || ||||| || | || || | || ||||||| || || ||||| ||||| Sbjct 441 AATGAGCTTCCGATCCAGACCGTCTTTAGCT-CCGACGGTGGAGACACTTACGCTTGGGC 499 Query 519 TTTTAAGGCAACGTCTGACT-TGGTTAAGGTCACTTTTTATAATCCTGGTGTTCAAGAAG 577 ||| ||||||| ||| || | |||||||||||||||| |||| |||||||||||||| | Sbjct 500 TTTCAAGGCAATGTCCGA-TGTGGTTAAGGTCACTTTCCATAACCCTGGTGTTCAAGAGG 558 Query 578 ACC-CTACTTGTGGCCCAATCGTT-GACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCG 635 ||| | || ||||| || || || || | ||| || || |||||||||||||||||||| Sbjct 559 ACCGC-ACGTGTGGACCTCTC-TTAGATGTTGTCGCTATCAAGGAGATTCTTCCTCTCCG 616 Query 636 GTATACCAAAGGGAACCTTG-TGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCA 694 |||||||| ||| ||| ||| |||||||||| ||||| |||| ||||||||||| ||| Sbjct 617 GTATACCAGAGGAAAC-TTGGTGAAAAACGGAGGATTCGAGATTGGTCCACACGTTTTC- 674 Query 695 GC-AACTTCTCTACCGGAATTTTAATTCCGGCGAAGA-TACAAGACCTAATCTCACCGCT 752 || || ||||| |||||||| || |||||||| |||| | |||||| | ||||| || || Sbjct 675 GCTAATTTCTCAACCGGAATCTTGATTCCGGC-AAGAATCCAAGACTTTATCTCTCCTCT 733 Query 753 TCCGGGATGGATCGTCGAATCTCTAAAACCGGTTAAGTACATCGATA-ACCGCCACTTCA 811 ||||||||||||||||||||| || || || || ||||||||||||| || | || |||| Sbjct 734 TCCGGGATGGATCGTCGAATCCCTTAAGCCAGTGAAGTACATCGATAGAC-GTCATTTCA 792 Query 812 AGGTTCCCTCA-GGTCTCG-CAGCAATCGAGCTTGTTGCCGGAAGAGAAAGCGCAATCGC 869 ||||||| | | || | | | || | || || || |||||||||||||| |||||||| Sbjct 793 AGGTTCCTT-ATGGACAAGGC-GCCGTAGAACTAGTCGCCGGAAGAGAAAGTGCAATCGC 850 Query 870 TCAGATCATCCGTACCGTCTCCGGTAAAAACTACATTCTCTCGTTTGTTGTGGGAGACGC 929 |||||||||||| ||| || | ||||| ||||||||||||||| | || || || || Sbjct 851 TCAGATCATCCGAACCATCGCTGGTAACGCCTACATTCTCTCGTTCGCGGTCGGCGATGC 910 Query 930 ACACAATGGTTGTCACGGATCGATGATGGTGGAGGCGTTTGCGGGAATATCGGCGTTTAA 989 || || ||||| ||||| || ||||||||||| ||||| || |||| | | | ||||| Sbjct 911 GCAAAACGGTTGCCACGGGTCTATGATGGTGGAAGCGTTCGCAGGAAGAGAGCCATTTAA 970 Query 990 GGTTACATTCGAA-TCT-AATGATAAAGGAGCGTTCAAAGTGGGGCGTTTC-GCGTTTCG 1046 || | || | || || | |||||||||||||||| |||| ||| | |||| | Sbjct 971 ACTTCCTTTT-ATGTCAGAAGG-TAAAGGAGCGTTCAAAACAGGGCATTTTAG-GTTT-G 1026 Query 1047 T-GCCGATTCGAATCGCACAAGGATAAC-TTTCTATAGTGGGTTTTATCATACCAAGCTT 1104 | || ||||| ||||| || ||| |||| ||| ||||||| ||||||||||| |||||| Sbjct 1027 TTGCTGATTCAAATCGAACGAGGCTAACATTT-TATAGTGCATTTTATCATACTAAGCTT 1085 Query 1105 CATGATTTTGGACATCTTTGTGGGCCTGTGCTTGATA 1141 |||||||| || ||||||||||||||||| ||||||| Sbjct 1086 CATGATTTCGGCCATCTTTGTGGGCCTGTTCTTGATA 1122 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45061287894 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5