BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41810.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483262 jgi|Araly1|483262|fgenesh2_kg.4__2322__AT2G41810.1 1700 0.0
Ahg483261 jgi|Araly1|483261|fgenesh2_kg.4__2321__AT2G41800.1 680 0.0
> Ahg483262 jgi|Araly1|483262|fgenesh2_kg.4__2322__AT2G41810.1
Length=1144
Score = 1700 bits (920), Expect = 0.0
Identities = 1059/1127 (94%), Gaps = 6/1127 (1%)
Strand=Plus/Plus
Query 43 TAAAAGCTCACAATGTCTCTCGTTCTCTCTCTTTGCTTGGTCTTCCTTTGTTCTCTTGTT 102
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 19 TAAATGCTCACAATGTCTCTCGTTCTCTCTCTTTGCTTGGCCTTCCTTTGTTCTTTTGTT 78
Query 103 CATGGTTCTCATAGCTTACCAGCACAACGGACTCCTCATCTTGATGGGCTTCTCCCAAAT 162
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 79 CATGGTTCTCATAGCTTACCAGCACAACGGACTCTTCATCTTGATGGGCTTCTTCCAAAT 138
Query 163 GGGAACTTTGAGCAAATTCCTAACAAATCAAACATGAGAAAGAGGCAAATAATTGGCAAA 222
||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 139 GGGGACTTTGAGAAAATTCCTAACAAATCAAACATGAGAAAGAGACAAATAATTGGCAAA 198
Query 223 TACTCTCTTCCACATTGGGAAATCTCCGGCCACGTAGAGCTAGTCTCTGGCGGTCCACAG 282
||||||||||| |||||||||||||| |||||||| ||| ||||||| ||||||||||||
Sbjct 199 TACTCTCTTCCCCATTGGGAAATCTCTGGCCACGTCGAGTTAGTCTCCGGCGGTCCACAG 258
Query 283 CCCGGTGGTTTTTACTTCGCAGTGCCACGTGGAGTCCACGCAGCTAGGCTAGGGAACTTA 342
|| || ||||| || ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 259 CCGGGCGGTTTCTATTTCGCGGTGCCACGTGGAGTCCACGCAGCTAGGCTAGGAAACTTA 318
Query 343 GCATCAATATCTCAGTATGTGAAAGTGAAAAGCGGCTTGGTCTATTCTCTAACGTTTGGT 402
|||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||
Sbjct 319 GCATCAATATCTCAATATGTTAAAGTGAAACGTGGCTTGGTCTATTCTTTAACGTTTGGT 378
Query 403 GTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAATCTCTGTGCCTGGTCAGACCAAT 462
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 379 GTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAATCTCTGTGCCCGGTCAGACCAAT 438
Query 463 GAGCTACCAATCCAAACATTGTTCAGTACCAACGGTGGTGATACGTACGCATGGGCTTTT 522
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 439 GAGCTACCAATCCAAACATTGTTCAGTACCAATGGTGGTGATACGTACGCTTGGGCTTTT 498
Query 523 AAGGCAACGTCTGACTTGGTTAAGGTCACTTTTTATAATCCTGGTGTTCAAGAAGA-CCC 581
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 499 AAGGCAACGTCTGATTTGGTTAAGGTCACTTTCCATAATCCTGGTGTTCAGGAAGATCCC 558
Query 582 TACTTGTGGCCCAATCGTTGACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCGGTATAC 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 -ACTTGTGGCCCAATCGTTGACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCGGTATAC 617
Query 642 CAAAGGGAACCTTGTGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCAGCAACTT 701
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CAAAGGAAACCTTGTGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCAGCAACTT 677
Query 702 CTCTACCGGAATTTTAATTCCGGCGAAGATACAAGACCTAATCTCACCGCTTCCGGGATG 761
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 678 TTCTACCGGAATTTTAATTCCGGCTAAGATACAAGACCTAATTTCACCGCTTCCGGGATG 737
Query 762 GATCGTCGAATCTCTAAAACCGGTTAAGTACATCGATAACCGCCACTTCAAGGTTCCCTC 821
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 738 GATCGTCGAATCTCTAAAACCGGTCAAGTACATCGATAACCGCCACTTCAAGGTCCCCTC 797
Query 822 AGGTCTCGCAGCAATCGAGCTTGT-TGCCGGAAGAGAAAGCGCAATCGCTCAGATCATCC 880
||| ||||| ||||||||||| || | ||||||||||||| || ||||||||||||||||
Sbjct 798 AGGACTCGCCGCAATCGAGCTCGTCT-CCGGAAGAGAAAGTGCCATCGCTCAGATCATCC 856
Query 881 GTACCGTCTCCGGTAAAAACTACATTCTCTCGTTTGTTGTGGGAGACGCACACAATGGTT 940
||||||||||||||| ||||||||||||||| || | || |||||||| ||||||||||
Sbjct 857 GTACCGTCTCCGGTAGAAACTACATTCTCTCATTCGCGGTTGGAGACGCGCACAATGGTT 916
Query 941 GTCACGGATCGATGATGGTGGAGGCGTTTGCGGGAATATCGGCGTTTAAGGTTACATTCG 1000
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||
Sbjct 917 GTCACGGATCGATGATGGTGGAGGCGTTTGTGGGAAAATCGGCGTTTAAGGTTGCGTTCG 976
Query 1001 AATCTAATGATAAAGGAGCGTTCAAAGTGGGGCGTTTCGCGTTTCGTGCCGATTCGAATC 1060
||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||
Sbjct 977 AATCTAATGATAAAGGAGCGTTCAAAGCGGGGCGTTTCACGTTTCGGGCCGATTCGAATC 1036
Query 1061 GCACAAGGATAACTTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACATC 1120
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1037 GCACGAGGATAACTTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACA-C 1095
Query 1121 TTT-GTGGGCCTGTGCTTGATAATGTTAGTGtttttttGGCCCATTA 1166
||| ||||||| || |||||||||||||| ||||| ||||||||||
Sbjct 1096 TTTTGTGGGCCGGTACTTGATAATGTTAGGGTTTTCCTGGCCCATTA 1142
> Ahg483261 jgi|Araly1|483261|fgenesh2_kg.4__2321__AT2G41800.1
Length=1187
Score = 680 bits (368), Expect = 0.0
Identities = 877/1117 (79%), Gaps = 58/1117 (5%)
Strand=Plus/Plus
Query 54 AATGTCTCTCGT-TCTCTCTCTTTG-CTTGGTCTTCCTTTGT-TCTCT-TGTTCATGGTT 109
|||||||||| | || ||||||| | ||| || |||||| | ||||| || ||||| |
Sbjct 35 AATGTCTCTC-TATCACTCTCTTAGCCTT-TTCCTCCTTT-TCTCTCTCTG-CCATGGCT 90
Query 110 CTCATAGCT-TACC-AGCACAACGGA-CTCCTCATCTTGATGGGCTTCTCCCAAATGGGA 166
|| | || | | || | ||| | || ||||||||| || ||||||||||||||||| |
Sbjct 91 CTTACAG-TCT-CCAACCACGTC-GAGTTCCTCATCTAGACGGGCTTCTCCCAAATGGAA 147
Query 167 ACTTTGAGCAAATTCCTAACAAATCAAACATGAGAAAG-AGGCAAATAATTGGCAAAT-A 224
|||| ||||||| ||| |||||||||||||| | | | |||||||| ||| | |
Sbjct 148 ACTTCGAGCAAACCCCTCTCAAATCAAACATGA-AGGGTCGACAAATAATCGGC-GCTAA 205
Query 225 CTCTCTTCCACATTGGGAAATCTCCGGCCACGTAGAGCTAGTCTCTGGCGGTCCACAGCC 284
||||||||| || ||| ||||| ||||||| | ||| ||||||| || || || |||||
Sbjct 206 CTCTCTTCCTCACTGGCAAATCGGCGGCCACATGGAGTTAGTCTCCGGTGGGCCTCAGCC 265
Query 285 CGGTGGTTTTTA-CTTCGCAGTGCCACGTGGAGTCCACGCAG-CTAGGCTAGGGAA-CTT 341
||| || || || ||| | || ||||||||||||||||| | ||| || |||| |||
Sbjct 266 CGGAGGATTCTATTTTC-CGGTCCCACGTGGAGTCCACGC-GATTAGAATA-GGAAGCTT 322
Query 342 -AGCATCAATATCTCAGTATGTGAAAGTGAAAAGCGGCTTGGTCTATTCTCTAACGTTTG 400
| | | || |||||| | |||| |||||| || || |||||||| ||||| ||||| |
Sbjct 323 GGGGA-CCATCTCTCAGGACGTGAGAGTGAAGAGTGGTTTGGTCTACTCTCTCACGTTCG 381
Query 401 GTGTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAA-TCTCTGTGCCTGGTCAGACC 459
| | |||||||||||| |||| || |||||||||| || |||| |||||||||||| ||
Sbjct 382 GAGCCACGAGGACTTGCCCTCAGGATGAGAACATCA-AAGTCTCAGTGCCTGGTCAGGCC 440
Query 460 AATGAGCTACCAATCCAAACATTGTTCAG-TACCAACGGTGGTGATACGTACGCATGGGC 518
|||||||| || ||||| || | || || | || ||||||| || || ||||| |||||
Sbjct 441 AATGAGCTTCCGATCCAGACCGTCTTTAGCT-CCGACGGTGGAGACACTTACGCTTGGGC 499
Query 519 TTTTAAGGCAACGTCTGACT-TGGTTAAGGTCACTTTTTATAATCCTGGTGTTCAAGAAG 577
||| ||||||| ||| || | |||||||||||||||| |||| |||||||||||||| |
Sbjct 500 TTTCAAGGCAATGTCCGA-TGTGGTTAAGGTCACTTTCCATAACCCTGGTGTTCAAGAGG 558
Query 578 ACC-CTACTTGTGGCCCAATCGTT-GACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCG 635
||| | || ||||| || || || || | ||| || || ||||||||||||||||||||
Sbjct 559 ACCGC-ACGTGTGGACCTCTC-TTAGATGTTGTCGCTATCAAGGAGATTCTTCCTCTCCG 616
Query 636 GTATACCAAAGGGAACCTTG-TGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCA 694
|||||||| ||| ||| ||| |||||||||| ||||| |||| ||||||||||| |||
Sbjct 617 GTATACCAGAGGAAAC-TTGGTGAAAAACGGAGGATTCGAGATTGGTCCACACGTTTTC- 674
Query 695 GC-AACTTCTCTACCGGAATTTTAATTCCGGCGAAGA-TACAAGACCTAATCTCACCGCT 752
|| || ||||| |||||||| || |||||||| |||| | |||||| | ||||| || ||
Sbjct 675 GCTAATTTCTCAACCGGAATCTTGATTCCGGC-AAGAATCCAAGACTTTATCTCTCCTCT 733
Query 753 TCCGGGATGGATCGTCGAATCTCTAAAACCGGTTAAGTACATCGATA-ACCGCCACTTCA 811
||||||||||||||||||||| || || || || ||||||||||||| || | || ||||
Sbjct 734 TCCGGGATGGATCGTCGAATCCCTTAAGCCAGTGAAGTACATCGATAGAC-GTCATTTCA 792
Query 812 AGGTTCCCTCA-GGTCTCG-CAGCAATCGAGCTTGTTGCCGGAAGAGAAAGCGCAATCGC 869
||||||| | | || | | | || | || || || |||||||||||||| ||||||||
Sbjct 793 AGGTTCCTT-ATGGACAAGGC-GCCGTAGAACTAGTCGCCGGAAGAGAAAGTGCAATCGC 850
Query 870 TCAGATCATCCGTACCGTCTCCGGTAAAAACTACATTCTCTCGTTTGTTGTGGGAGACGC 929
|||||||||||| ||| || | ||||| ||||||||||||||| | || || || ||
Sbjct 851 TCAGATCATCCGAACCATCGCTGGTAACGCCTACATTCTCTCGTTCGCGGTCGGCGATGC 910
Query 930 ACACAATGGTTGTCACGGATCGATGATGGTGGAGGCGTTTGCGGGAATATCGGCGTTTAA 989
|| || ||||| ||||| || ||||||||||| ||||| || |||| | | | |||||
Sbjct 911 GCAAAACGGTTGCCACGGGTCTATGATGGTGGAAGCGTTCGCAGGAAGAGAGCCATTTAA 970
Query 990 GGTTACATTCGAA-TCT-AATGATAAAGGAGCGTTCAAAGTGGGGCGTTTC-GCGTTTCG 1046
|| | || | || || | |||||||||||||||| |||| ||| | |||| |
Sbjct 971 ACTTCCTTTT-ATGTCAGAAGG-TAAAGGAGCGTTCAAAACAGGGCATTTTAG-GTTT-G 1026
Query 1047 T-GCCGATTCGAATCGCACAAGGATAAC-TTTCTATAGTGGGTTTTATCATACCAAGCTT 1104
| || ||||| ||||| || ||| |||| ||| ||||||| ||||||||||| ||||||
Sbjct 1027 TTGCTGATTCAAATCGAACGAGGCTAACATTT-TATAGTGCATTTTATCATACTAAGCTT 1085
Query 1105 CATGATTTTGGACATCTTTGTGGGCCTGTGCTTGATA 1141
|||||||| || ||||||||||||||||| |||||||
Sbjct 1086 CATGATTTCGGCCATCTTTGTGGGCCTGTTCTTGATA 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5