BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41830.1
Length=3830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483264 jgi|Araly1|483264|fgenesh2_kg.4__2324__AT2G41830.1 5594 0.0
> Ahg483264 jgi|Araly1|483264|fgenesh2_kg.4__2324__AT2G41830.1
Length=3760
Score = 5594 bits (3029), Expect = 0.0
Identities = 3401/3576 (95%), Gaps = 44/3576 (1%)
Strand=Plus/Plus
Query 102 TATCAGAGCTAAAAGCTTCGCCGGACGATCCGGCGACTAAA-TCCTACTGAGAG-AATAA 159
|||||||||| |||||||||||||||||||||||||||||| ||| |||||||| || ||
Sbjct 54 TATCAGAGCTCAAAGCTTCGCCGGACGATCCGGCGACTAAATTCC-ACTGAGAGAAACAA 112
Query 160 --TCCGGTCTCTC----AGAGAGAGA-A-AGGGTTTCGAGTTTTCTGGTGTGTCGCCGAT 211
|||| |||||| ||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 113 TCTCCGTTCTCTCAGAGAGAGAGAGAGAGAGGGTTTCGAGTTTTCTGGTGCGTCGCCGAT 172
Query 212 CAGTTTTCAGTTACCAACTGGCTTATTTGTGCTTTGATCTGAGGCGAAGGTTTGAGTTCT 271
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 173 CAATTTTCAGTTACCGGTTGGCTTATTTGTGCTTTGATCTGAGGCGAAGGTTTGAGTTTT 232
Query 272 AAGGAGTGTATCGTTTAATCATCGAGCTCTGTTTTCCTTCTTTCCCGAGGAAGCTCTAGG 331
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 233 AAGGAGTGCCTCGTTTAATCATCGAGCTCTGTTTTCCTTCTTGCCCGAGGAAGCTCTAGG 292
Query 332 GCTTTTTCGGTGGATCAAGAGGGAGGGAGGGAGGATTAACACG--TAAATAAGATTTAAC 389
|||||||||||||||||||||||| ||| | || |||| | | | || | |||||
Sbjct 293 GCTTTTTCGGTGGATCAAGAGGGACGGA--G-GG-TTAATA-GATTCAACAGGATTT-TG 346
Query 390 AGGAA-TTTG-CGGA--A-T--TTTGATTATATCAGTGAGTAGAAGAAATGAGCGCAGTC 442
||||| |||| || | | ||| || |||| ||||||| |||||||||| |||||
Sbjct 347 AGGAATTTTGATTGATCAGTGGTTT-TTTTTATC--TGAGTAGTAGAAATGAGCTCAGTC 403
Query 443 TCGGGTGTAATCTCGAGGCAAGTTTTGCCTGTTTGTGGTAGCCTTTGTATTCTTTGCCCT 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TCGGGTGTAATCTCGAGGCAAGTTTTGCCTGTTTGTGGTAGCCTTTGTATTCTTTGCCCT 463
Query 503 GCGCTTCGTGCAAGGTCTAGACAGCCTGTGAAGAGGTACAAGAAGCTCATTGCTGAGATT 562
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 464 GCGCTTCGTGCAAGATCTAGACAGCCTGTGAAGAGGTACAAGAAGCTCATTGCTGATATA 523
Query 563 TTTCCTCGTAATCAGGAGGAAGGCATAAATGATCGAAAGATAGGAAAATTATGTGAGTAT 622
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 524 TTTCCTCGTAATCAGGAGGAAGGCATAAATGATCGAAAGATTGGAAAATTATGTGAATAT 583
Query 623 GCTGCAAAAAACGCTGTGCGTATGCCAAAGATATCAGATTCCCTGGAACATAGATGTTAC 682
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 584 GCTGCAAAGAACGCTGTGCGTATGCCAAAGATATCAGATTCTCTGGAACAAAGATGTTAC 643
Query 683 AAGGAATTGAGGAATGAGAATTTCCACTCGGCAAAGATAGCCATGTGTATTTACAGAAGG 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 AAGGAACTGAGGAATGAGAATTTCCACTCGGCAAAGATAGCCATGTGTATTTACAGAAGG 703
Query 743 CTTCTGGTCACTTGTAAGGAGCAAATACCTCTATTTTCTAGTGGTTTCCTAAGGACGGTG 802
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 704 CTTCTGGTCACTTGTAAGGAGCAAATACCTCTTTTTTCTAGTGGTTTCCTAAGGACGGTG 763
Query 803 CAAGCTCTTTTGGATCAAACTCGACAAGATGAAATGCAAATAGTTGGATGTCAGTCTCTT 862
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 764 CAAGCTCTTTTGGATCAAACTCGACAAGATGAAATGCAAATAGTTGGGTGTCAGTCTCTT 823
Query 863 TTCGAATTTGTAATTAATCAGAAGGATGGCAGTTCCCTATTTAACTTGGAAGGCTTTCTC 922
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 824 TTCGAATTTGTAATTAATCAGAAGGATGGCAGTTCCCTGTTTAACTTGGAAGGCTTTCTC 883
Query 923 CCAAAGCTGTGCCAATTAGGACTGGAAGGTGGGGATGATGACAGGTCGCGGAGCCTGCGT 982
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 884 CCAAAGCTGTGCCAATTAGGACTGGAAGGTGGGGATGATGATAGGTCGCGGAGCCTGCGT 943
Query 983 GCAGCGGGACTTCAAGCCCTTTCAGCAATGATTTGGCTGATGGGTGAATACTCTCATATT 1042
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 GCCGCAGGACTTCAAGCCCTTTCAGCAATGATTTGGCTGATGGGTGAATACTCTCATATT 1003
Query 1043 CCCAGTGAATTTGACAATGTTGTCTCAGCAGTCTTGGAAAATTACGGTCACCCCAAAATA 1102
||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1004 CCCAGCGACTTTGACAATGTTGTCTCAGCAGTCTTGGAAAATTATGGCCACCCCAAAATA 1063
Query 1103 -TTAACAAATGCTAATGATAGTGGCAGAAAATGGGTGGATGAAGTATTGAAAAACGAAGG 1161
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1064 CTT-ACAAATGCTAATGATAGTGGCAGAAAATGGGTGGATGAAGTCTTGAAAAACGAAGG 1122
Query 1162 TCATGTAGCTTATGAAGATTCCCTCATAAATGTTCCTTCTTGGAGAACGGTTGTGAATGA 1221
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TCATGTAGCTTATGCAGATTCCCTCATAAATGTTCCTTCTTGGAGAACGGTTGTGAATGA 1182
Query 1222 CAAGGGTGAACTAAATGTGAAAATGGAAGATTCCTTGGACCCTAGCTTTTGGTCTAAGGT 1281
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1183 CAAGGGTGAACTAAATGTGAAAATGGAAGATTCCTTGGACCCTAGCTTTTGGTCCAAGGT 1242
Query 1282 TTGCCTACACAACATGGCCAAGCTAGGTGAAGAGGCCACAACAATGAGACGTATACTTGA 1341
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1243 TTGTCTACACAACATGGCCAAGCTAGGTGAAGAGGCCACAACAATGAGACGCATACTTGA 1302
Query 1342 GTCTTTGTTCCGTAACTTTGACGAGGGATGTCTATGGTCAACAGAAAATTCGATTGCATT 1401
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1303 GTCTTTGTTCCGTTACTTTGACGAGGGATGTCTGTGGTCAACAGAAAATTCGATTGCATT 1362
Query 1402 CCCTGTTTTAAGGGATCTGCAGTTTTTAATGGAAATATCTGGGCAAAGAACACACTTTCT 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 CCCTGTTTTAAGGGATCTGCAGTTTTTAATGGAAATATCTGGGCAAAGAACACACTTTCT 1422
Query 1462 ACTTTCTATGTTGATTAAACACCTTGACCATAAAAGTGTGCTTAAACACCCAAGCATGCA 1521
||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1423 ACTGTCTATGTTGATCAAACACCTTGATCATAAAAGTGTGCTTAAACACCCAAGCATGCA 1482
Query 1522 GCTCAACATTTTAGAGGTTACCTCCTCCCTTTCTGAAACTGCAAAAGTTGAGCACTCTGC 1581
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1483 GCTCAACATTTTAGAGGTTACCTCCTCCCTTTCTGAAAATGCAAAAGTTGAGCACTCCGC 1542
Query 1582 AACGATAGTCAGCGCAATAAGCGATATCATGAGGCACTTGAGAAAATGCATGCATTCTTC 1641
| | |||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1543 AGCAATAGTCAGTGCAATAAGTGATGTCATGAGGCACTTGAGAAAATGCATGCATTCTTC 1602
Query 1642 TCTAGATGAAGCAAATCTTGGAACTGACGCAGCAAACTGTATCAGAATGGTCAGTGTAGC 1701
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 TCTAGATGAAGCAAATATTGGAACTGACGCAGCAAACTGTATCAGAATGGTCAGTGTAGC 1662
Query 1702 TGTTGATAAGTGCCTCGTCCAACTAACGAAAAAGGTTGGAGATGCTGGCCCAATTCTAGA 1761
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1663 TGTTGATAAGTGCCTCGTCCAGCTAACGAAGAAGGTTGGAGATGCTGGCCCAATTCTAGA 1722
Query 1762 TGCTATGGCTTTGATGTTGGAGAATATCTCCGCTGTCACAGACGTAGCAAGAACCACAAT 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 TGCTATGGCTTTGATGTTGGAGAATATCTCCGCTGTCACAGACGTAGCAAGAACCACAAT 1782
Query 1822 TGCTGCAGTTTTTCGCACTGCTCAAATTATAGCCTCTATACCAAATCTACAATATCAAAA 1881
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 TGCTGCTGTTTTTCGCACTGCTCAAATTATAGCCTCTATACCAAATCTACAATATCAAAA 1842
Query 1882 CAAGGCTTTTCCCGAGGCCTTGTTTCATCAGTTACTTCAAGCTATGGTCCATCCAGATCA 1941
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1843 CAAGGCTTTTCCCGAGGCCTTATTCCATCAGTTACTTCAAGCTATGGTCCATCCAGATCA 1902
Query 1942 TAAAACACGGATTGGTGCTCACCGTATATTTTCTGTTGTGCTGGTACCAACCTCAGTCTG 2001
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 TAAAACACGGATTGGCGCCCACCGTATATTTTCTGTTGTGCTGGTACCAACCTCAGTCTG 1962
Query 2002 CCCTCGTCCTTCCTCGACCACTACTGACCTTAAGAAAGGAATGGGTCTTCCTCGTTCACT 2061
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 CCCCCGTCCTTCCTCGACCACTACTGACCTTAAGAAAGGAATGGGTCTTCCTCGTTCACT 2022
Query 2062 TTCAAGGACCGCTTCTGTCTTTTCCTCCTCAGCAGCCCTATTCGAGAAGCTGAAGAAGGA 2121
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2023 TTCAAGGACCGCTTCTGTCTTTTCCTCTTCAGCAGCCCTTTTCGAGAAGCTGAAGAAGGA 2082
Query 2122 TAAATTTTCATCGATGCTGACTTCTGATCATAGTCAAAACGGAATGCCTGAGGAAGAACG 2181
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 2083 TAAATTTTCATCGATGCTGACTTCTGATCAGAGCCAAAACGGAATGCCTGAGGAAGAATG 2142
Query 2182 TGGAAGCAGTACGGGGGAAATCCTTGACAGATTGAAATCTTCATACCGTCAGGCATATAG 2241
|||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 2143 TGGAAGCACTACGGGGGAAATTCTTGACAGATTGAAATCTTCATACAGTCAGGCATATAG 2202
Query 2242 CACTTGGAATCAACCATTGACCTCGGTAGTAGATAACTCTGTGGATCTTTTAAACTCTGA 2301
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2203 CACTTGGAATCAACCAGTGACCTCGGTAGCAGATAACTCTGTGGATCTTTTAAACTCTGA 2262
Query 2302 GCTGGATGTTGTTCATATAAGACTAAGTAGTCACCAGATAGGTCTTTTGCTTTCATCAAT 2361
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2263 GCTGGATGTTGTTCATATAAGGCTAAGTAGTCACCAGATAGGTCTTTTGCTTTCATCAAT 2322
Query 2362 CTGGGCACAGTCCATATCTCCTGCAAATACACCAGACAATTATGAGGCAATTGCTAACAC 2421
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 2323 CTGGGCACAGTCCATATCTCCGGCAAATACACCAGACAATTATGAGGCGATTGCTAACAC 2382
Query 2422 CTACAGTCTTGTATTGTTGTTCTCTCGTGTTAAGAACTCAAGTCATGACGCTTTGATTCG 2481
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2383 CTACAGTCTTGTATTGTTGTTCTCTCGTGTTAAGAACTCAAGTCACGACGCTTTGATTCG 2442
Query 2482 AAGTTTCCAAATGGCACTTTCTTTGCGAGATATTTCATTGATGGAAGGAGGACCACTTCC 2541
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2443 AAGTTTTCAAATGGCACTTTCTTTGCGAGATATTTCTTTGATGGAAGGAGGACCACTTCC 2502
Query 2542 TCCATCTCGACGAAGGTCACTTTTTACACTGGCTGCATCAATGGTTCTTTTTTCCTCAAA 2601
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2503 TCCATCTCGGCGAAGGTCACTCTTTACACTGGCTGCATCAATGGTTCTTTTTTCCTCAAA 2562
Query 2602 AGCATTCAATCTTTTTTCTCTGGCGGATTTTACAAAAGTAACACTTCAGGGACCAAGGCT 2661
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2563 AGCATTCAATCTTTTTTCTCTGGCGGATTTCACAAAATTAACACTTCAGGGACCAAGGCT 2622
Query 2662 TGACCCATTCTTGAACTTGGTTGACGATCACAAGTTGAAGGCTGTAAATTCAGATCAGCT 2721
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2623 TGACCCATTTTTGAACTTGGTTGACGATCACAAGTTGAAGGCTATAAATTCAGATCAGCT 2682
Query 2722 AAAA-GTTGCTTATGGATGCGAAAAAGATGATGCTTCAGCTTTAGATACTCTTTCAAACA 2780
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2683 AAAAGGTT-CTTATGGATGCGAAAAAGATGATGCTTCAGCTTTAGATACTCTTTCAAACA 2741
Query 2781 TAGCACTGTCCACTGAGCATAGCAGAGGAACCCTTGTCTATGAAATCGTCAAGAGCTTAG 2840
||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 2742 TAGCACTCTCCACTGAGCATAGCAGAGGAAACCTTGTCTATGAAATCGTCAAAAGCTTAG 2801
Query 2841 AAGATATGTGCAATTCTGAAATGGACAAAATGCGAGAGCAGTTGCTCACAGAATTTATGC 2900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2802 AAGATATGTGCAATTCTGAAATGGACAAAATGCGAGAGCAGTTGCTCACAGAATTTATGC 2861
Query 2901 CAGATGATGCATGTCCACTTGGTACCCGGTTTTTAGAAGATACCCACAAAACCTATCAGA 2960
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2862 CAGATGATGCATGTCCACTTGGTACCCGGTTTTTAGAAGATACCCAAAAAACCTATCAGG 2921
Query 2961 TTGATTCTGGTGATGTTAAACCTCGAAAGGAGGACGCGGAGGATCAAGAGTTTGGAGATG 3020
|||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 2922 TTGATTCTGGAGATGTTAAATCTCAAAAGGTGGACGCGGAGGATCAAGAGTTTGGAGATG 2981
Query 3021 GCACCGAAACCGTTACAAAGAA-CAATCATGTAACATTTTCTGAAATCCCAGACCTCCTG 3079
|||||||||||||| ||||||| || || |||||||||||||||||||||||||||||||
Sbjct 2982 GCACCGAAACCGTTGCAAAGAATCA-TCCTGTAACATTTTCTGAAATCCCAGACCTCCTG 3040
Query 3080 ACCGTCAATCAAAT-TCTAGAATCTGTCGTAGAGACAACACGTCAAGTGGGTAGAATTTC 3138
||||||||||| || | ||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 3041 ACCGTCAATCAGATAT-TAGAATCTGTCGTTGAGACAACAGGTCAAGTGGGTAGAATATC 3099
Query 3139 CTTCCATACTGCAGCCGATGCTTCATACAAAGAGATGACGCTGCATTGTGAGAATCTGTT 3198
||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 3100 CTTCCATACTGCAGCTGATGCTTCATACAAAGAAATGACACTTCATTGTGAGAATCTGTT 3159
Query 3199 AATGGGAAAACAGCAGAAGATCTCGAGTCTTTTAAATTCTCAGCTACGACATGAGAGTTC 3258
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3160 AATGGGAAAACAACAGAAGATCTCGAGTCTTTTAAATTCTCAGCTACGACATGAGAGTTC 3219
Query 3259 TGTTAACTGCTCTCCACGACAACATGATGAAGAGATCAAGATTGCATCTTTTCATCCTAT 3318
|||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||
Sbjct 3220 TGTTAACTGCTCTCCACGACAACATGATGAAGAGATTAAGATCGCAAGTTTCCATCCTAT 3279
Query 3319 GATCAATTCAGCATTTCATACTGGGGTCGAAGTCCCTTTACTGTCGAAAGAATTCGACAT 3378
| ||||| || |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 3280 GCTCAATCCAACATTTCATACTGAGGTCGAAGTCCCTTTACTGTCGAATTCCTTCGACAT 3339
Query 3379 GAAATCGCCAAGAACACCAGTGGGAACTATTCAGTCACCGTGCTATGCAGAACTACAAAA 3438
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3340 GAAATCGCCAAGAACACCAGTGGGAACTATTCAGTCACCGTGCTTTGCAGAACTACAAAA 3399
Query 3439 TAACCCACAAGCATTTAGACTACCAGCCTCAAGCCCTTACGACAACTTCCTTAAAGCTGC 3498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3400 TAACCCACAAGCATTTAGACTACCAGCCTCAAGCCCTTACGACAACTTCCTTAAAGCTGC 3459
Query 3499 TGGCTGTTGATCATCGGCAGGATCCAAACCAT-GTTTGGCTTTGAATTCCAGTCAA--GA 3555
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 3460 TGGCTGTTGATCATCGGCAGGATCCAAACCATTGTTTGGCTTTGAATTCCAGTCAAAAGA 3519
Query 3556 ACTCAAACAAAACA--T-AACAAAAATAGGTTTGCTTGGTTTTCAAAGTCTTGGGTTACG 3612
|||||||||||| | | ||||||| ||||||||||||||||||||||||||| |||||
Sbjct 3520 ACTCAAACAAAAAAAATTAACAAAACTAGGTTTGCTTGGTTTTCAAAGTCTTGAGTTACA 3579
Query 3613 TTTTTATAGATTCTTTAGCATCATAAATCGGAATTA 3648
||||| ||||||||||||||| ||||||||||||||
Sbjct 3580 TTTTT-TAGATTCTTTAGCATTATAAATCGGAATTA 3614
Score = 206 bits (111), Expect = 1e-51
Identities = 138/150 (92%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 3681 TAGGTTTTTACTCCTATCTTCTCTTTTCACTTATTCTTTTGTCCAATTC--TTGTTTCTT 3738
|||||||||| |||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 3613 TAGGTTTTTATTCCTATCTTCTCTTTTCAGTTATTCTTTTATCCAATTCATTTGTTTCTT 3672
Query 3739 TTTGGTGTGATGTGTAAAAA-ATTGAAAGAGGCCATCTGGTTTTCACATGGTATTGTAAT 3797
|||||||||||||||||||| || ||||||||||||||||||||||| |||| |||||||
Sbjct 3673 TTTGGTGTGATGTGTAAAAAGAT-GAAAGAGGCCATCTGGTTTTCACGTGGTCTTGTAAT 3731
Query 3798 CTTAAGATTCTACAACAGATG-CTTTGTTG 3826
|| |||||||||||||| ||| ||||||||
Sbjct 3732 CTAAAGATTCTACAACA-ATGGCTTTGTTG 3760
Score = 75.0 bits (40), Expect = 4e-12
Identities = 52/57 (91%), Gaps = 4/57 (7%)
Strand=Plus/Plus
Query 11 AAAAATAAGAATGAAGTAGCAAGCAACGAAACGGCAGAAGGTGGAACCCGCGTCGTG 67
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATAAAAATGAAGT----AGCAACGAAACGGCAGAAGGTGGAACCCGCGTCGTG 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144732950119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5