BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41835.1 Length=1228 Score E Sequences producing significant alignments: (Bits) Value Ahg935037 jgi|Araly1|935037|scaffold_403025.1 1314 0.0 > Ahg935037 jgi|Araly1|935037|scaffold_403025.1 Length=888 Score = 1314 bits (711), Expect = 0.0 Identities = 831/889 (93%), Gaps = 8/889 (1%) Strand=Plus/Plus Query 134 GGAATTGTTGTTCGAATTCGAATGGGGACTCCGGAATTTCCAGATCTGGGGAAACACTGC 193 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1 GGAATTGTTGTTCGAATTCGAATGGGAACACCGGAATTTCCAGATCTGGGGAAACACTGC 60 Query 194 TCCGTCGATGTTTGCAAGCAAATCGATTTCTTGCCTTTCACCTGCGACCGTTGCCTACAG 253 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 61 TCCGTCGATGTTTGCAAGCAAATCGATTTCTTGCCCTTCACCTGCGACCGTTGCCTCCAG 120 Query 254 GTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGCGATAGAGAA 313 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 GTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGCGACAGAGAA 180 Query 314 GATGTGACTGTAGTTATCTGCCCACTCTGTGCTAAAGGAGTCCGATTAAACCCAAACGAA 373 ||||| || || |||||||| || |||||||||||||||||||| ||||||||||||||| Sbjct 181 GATGTAACCGTGGTTATCTGTCCGCTCTGTGCTAAAGGAGTCCGGTTAAACCCAAACGAA 240 Query 374 GACCCAAATATAACATGGGAGAAACATGTCAATACCGACTGTGACCCATCAAACTACGAA 433 |||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||| Sbjct 241 GACCCAAATATAACATGGGAGAAACATGTCAACACTGATTGTGACCCATCAAACTATGAA 300 Query 434 AAAGCTACAAAGAAGAAGAAATGTCCCGTTCCAAGATGCAAGGAGTACCTAACTTTCTCC 493 ||||| || ||||||||||||||||| |||||||||||||||||| | ||||| |||||| Sbjct 301 AAAGCCACCAAGAAGAAGAAATGTCCGGTTCCAAGATGCAAGGAGCAACTAACATTCTCC 360 Query 494 AACACCATCAAGTGCCGAGATTGCAATGTCGATCACTGCTTGAAACATCGTTTTGGACCT 553 ||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||| Sbjct 361 AACACCATCAAGTGCCGGGATTGCAATATCGATCACTGCTTAAAACACCGTTTTGGACCT 420 Query 554 GATCACACTTGCCCTGGACCAAGAAAACTCCCATTCATGGGTTTCTTGAGTAGTAGTACC 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GATCACACTTGCCCTGGACCAAGAAAACTCCCATTCATGGGTTTCTTGAGTAGTAGTAGT 480 Query 614 A----C--CAGAAAAGAAGCTAAGACAACAAGACCCAACAAAGCTCATCCATCAACTTCA 667 | | ||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 481 AGTAGCAGCAGAAAAGAAGCTAAGACAACAAGACCCACCAAAGCTCATGCATCAACTTCA 540 Query 668 TCATCTTCTTCTTCTTCGAGATGGTCTAATCTCCTATCTTCAGCAGAAGCAGGAATTAGC 727 || |||||||||||||| |||||||| ||||| |||||||||||||||||||| || ||| Sbjct 541 TCTTCTTCTTCTTCTTCAAGATGGTCCAATCTTCTATCTTCAGCAGAAGCAGGGATCAGC 600 Query 728 AGGCTCGGTAATGACATTAGCCAGAAGCTACAGTTTTCGAGCAGCAA-AGATAATGGTAT 786 ||||||||||| ||||||||||||||||||||||||| |||||||| || | ||||||| Sbjct 601 AGGCTCGGTAACGACATTAGCCAGAAGCTACAGTTTTTGAGCAGCAGCAG-TGATGGTAT 659 Query 787 CGTGGAGGTGTGTCCACAGTGCGGTGCGAAATTCTCTTCGGTTACTTCTCTTGTGGAACA 846 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 660 CGTGGAGGTGTGTCCACAGTGCGGTGCGAAATTCTCTTCAGTTACTACTCTTGTGGAACA 719 Query 847 TGTAGAGAAAACACATGAGAGGAACAAGAAGCAGAATCATGGCAATGTCACGGTCGATGT 906 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 720 TGTAGAGAAAACACATGAGAGGAACAGGAAGCAGAATCATGGCAATGTCACAGTCGATGT 779 Query 907 CTGCCCTAGATGTAGCAGAGGATTCCGCGATCCAGTAGATCTTGTGAACCATATCGAAAG 966 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 780 CTGCCCTAAATGTAGCAGAGGATTCCGCGATCCAGTAGATCTTGTGAATCATATCGAAAG 839 Query 967 AGATCACCGAGGCACTTCGAAAGCATAGGAACATATGCGTTTACAAGCC 1015 ||| |||||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 840 AGAACACCGAGGTACTTCTAAAGCATAGGAACATAGGCGTTCACAAGCC 888 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45861869151 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5