BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41835.1
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935037 jgi|Araly1|935037|scaffold_403025.1 1314 0.0
> Ahg935037 jgi|Araly1|935037|scaffold_403025.1
Length=888
Score = 1314 bits (711), Expect = 0.0
Identities = 831/889 (93%), Gaps = 8/889 (1%)
Strand=Plus/Plus
Query 134 GGAATTGTTGTTCGAATTCGAATGGGGACTCCGGAATTTCCAGATCTGGGGAAACACTGC 193
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 GGAATTGTTGTTCGAATTCGAATGGGAACACCGGAATTTCCAGATCTGGGGAAACACTGC 60
Query 194 TCCGTCGATGTTTGCAAGCAAATCGATTTCTTGCCTTTCACCTGCGACCGTTGCCTACAG 253
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 61 TCCGTCGATGTTTGCAAGCAAATCGATTTCTTGCCCTTCACCTGCGACCGTTGCCTCCAG 120
Query 254 GTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGCGATAGAGAA 313
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGCGACAGAGAA 180
Query 314 GATGTGACTGTAGTTATCTGCCCACTCTGTGCTAAAGGAGTCCGATTAAACCCAAACGAA 373
||||| || || |||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 181 GATGTAACCGTGGTTATCTGTCCGCTCTGTGCTAAAGGAGTCCGGTTAAACCCAAACGAA 240
Query 374 GACCCAAATATAACATGGGAGAAACATGTCAATACCGACTGTGACCCATCAAACTACGAA 433
|||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct 241 GACCCAAATATAACATGGGAGAAACATGTCAACACTGATTGTGACCCATCAAACTATGAA 300
Query 434 AAAGCTACAAAGAAGAAGAAATGTCCCGTTCCAAGATGCAAGGAGTACCTAACTTTCTCC 493
||||| || ||||||||||||||||| |||||||||||||||||| | ||||| ||||||
Sbjct 301 AAAGCCACCAAGAAGAAGAAATGTCCGGTTCCAAGATGCAAGGAGCAACTAACATTCTCC 360
Query 494 AACACCATCAAGTGCCGAGATTGCAATGTCGATCACTGCTTGAAACATCGTTTTGGACCT 553
||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 361 AACACCATCAAGTGCCGGGATTGCAATATCGATCACTGCTTAAAACACCGTTTTGGACCT 420
Query 554 GATCACACTTGCCCTGGACCAAGAAAACTCCCATTCATGGGTTTCTTGAGTAGTAGTACC 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATCACACTTGCCCTGGACCAAGAAAACTCCCATTCATGGGTTTCTTGAGTAGTAGTAGT 480
Query 614 A----C--CAGAAAAGAAGCTAAGACAACAAGACCCAACAAAGCTCATCCATCAACTTCA 667
| | ||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 481 AGTAGCAGCAGAAAAGAAGCTAAGACAACAAGACCCACCAAAGCTCATGCATCAACTTCA 540
Query 668 TCATCTTCTTCTTCTTCGAGATGGTCTAATCTCCTATCTTCAGCAGAAGCAGGAATTAGC 727
|| |||||||||||||| |||||||| ||||| |||||||||||||||||||| || |||
Sbjct 541 TCTTCTTCTTCTTCTTCAAGATGGTCCAATCTTCTATCTTCAGCAGAAGCAGGGATCAGC 600
Query 728 AGGCTCGGTAATGACATTAGCCAGAAGCTACAGTTTTCGAGCAGCAA-AGATAATGGTAT 786
||||||||||| ||||||||||||||||||||||||| |||||||| || | |||||||
Sbjct 601 AGGCTCGGTAACGACATTAGCCAGAAGCTACAGTTTTTGAGCAGCAGCAG-TGATGGTAT 659
Query 787 CGTGGAGGTGTGTCCACAGTGCGGTGCGAAATTCTCTTCGGTTACTTCTCTTGTGGAACA 846
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 660 CGTGGAGGTGTGTCCACAGTGCGGTGCGAAATTCTCTTCAGTTACTACTCTTGTGGAACA 719
Query 847 TGTAGAGAAAACACATGAGAGGAACAAGAAGCAGAATCATGGCAATGTCACGGTCGATGT 906
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 720 TGTAGAGAAAACACATGAGAGGAACAGGAAGCAGAATCATGGCAATGTCACAGTCGATGT 779
Query 907 CTGCCCTAGATGTAGCAGAGGATTCCGCGATCCAGTAGATCTTGTGAACCATATCGAAAG 966
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 CTGCCCTAAATGTAGCAGAGGATTCCGCGATCCAGTAGATCTTGTGAATCATATCGAAAG 839
Query 967 AGATCACCGAGGCACTTCGAAAGCATAGGAACATATGCGTTTACAAGCC 1015
||| |||||||| ||||| |||||||||||||||| ||||| |||||||
Sbjct 840 AGAACACCGAGGTACTTCTAAAGCATAGGAACATAGGCGTTCACAAGCC 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45861869151
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5