BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41840.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483266 jgi|Araly1|483266|fgenesh2_kg.4__2326__AT2G41840.1 1688 0.0
Ahg475376 jgi|Araly1|475376|fgenesh2_kg.2__506__AT1G58684.1 752 0.0
Ahg938731 jgi|Araly1|938731|scaffold_502922.1 699 0.0
> Ahg483266 jgi|Araly1|483266|fgenesh2_kg.4__2326__AT2G41840.1
Length=1161
Score = 1688 bits (914), Expect = 0.0
Identities = 1100/1186 (93%), Gaps = 27/1186 (2%)
Strand=Plus/Plus
Query 1 AGAAACCCTAAAAATCCTTATTGTAGCAGCTGGAGCAATATATATCCCAATTTGCCGCAA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AGAAACCCTAAAAATCCTTATTGTAGCAGCTGGAGCAATATATATCACAATTTGCCGCAA 60
Query 61 CTAGGGTTTTCTCTTCCTCACGCAAAGCAATACATCGCAGTCTCCCACTGATTCAGCAGC 120
||||||||||||||| ||||| ||| |||| |||||| | || |||||||||||
Sbjct 61 CTAGGGTTTTCTCTTTCTCACACAACGCAACACATCG-A------AACCGATTCAGCAGC 113
Query 121 TCTTTGAACTACTCTTCGACAATGGCCGAACGTGGTGGAGAACGTGGTGTTGAGCGTGGT 180
|| || || ||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 114 TC-TT-AA--ACTCTTCGAAAATGGCGGAACGTGGTGGAGAACGTGGTGTTGAGCGTGGT 169
Query 181 GGAGAACGTGGTGATTTCGGACGAGGATTCggaggccgtggaggtcgtggagatcgtgga 240
||||||||||||| | |||||| ||||||||| ||||| |||||||||||||||
Sbjct 170 GGAGAACGTGGTGGTCACGGACGTGGATTCGGA------GGAGGCCGTGGAGATCGTGGA 223
Query 241 gggcgtggacgtggaggccgtggtggtcgtcgtggagggcgtgCCAGTGAAGAAGAGAAA 300
|| |||||||| ||||||| ||||||| |||||||| ||| |||||||||||||||||
Sbjct 224 GGCCGTGGACGCGGAGGCC---GTGGTCGACGTGGAGGCCGTACCAGTGAAGAAGAGAAA 280
Query 301 TGGGTTCCAGTGACCAAGCTTGGTCGTCTCGTGGCGG-CTGGTCA-TATCAAGCAGATAG 358
||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||
Sbjct 281 TGGGTTCCAGTGACCAAGCTTGGTCGTCTCGTGGCGGAC-GGT-AGAATCAAGCAGATAG 338
Query 359 AGCAGATCTATCTTCATTCACTCCCGGTTAAGGAGTACCAGATCATTGATATGCTCATCG 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 339 AGCAGATCTATCTTCATTCACTCCCGGTTAAGGAGTATCAGATCATTGATATGCTCATCG 398
Query 419 GTCCAACATTGAAGGATGAGGTAATGAAAATCATGCCGGTTCAGAAACAAACCAGGGCTG 478
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 399 GTCCAACCTTGAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAACAAACCAGAGCTG 458
Query 479 GTCAAAGGACTAGATTCAAGGCCTTTGTTGTCGTTGGAGATGGTAATGGTCATGTTGGGT 538
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 459 GTCAGAGAACTAGATTCAAGGCCTTTGTTGTCGTTGGAGATGGTAATGGTCATGTTGGAT 518
Query 539 TGGGAGTGAAATGCTCTAAGGAAGTTGCTACGGCCATTAGAGGAGCGATTATTCTCGCTA 598
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 519 TGGGAGTGAAATGCTCTAAGGAAGTTGCTACGGCGATTAGAGGAGCGATTATTCTCGCTA 578
Query 599 AGCTGTCTGTTGTTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACATA 658
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 579 AGTTGTCTGTTGTTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACA 638
Query 659 CGGTTCCTTGTAAGGTGACTGGGAAGTGTGGATCTGTGACAGTGAGGATGGTTCCAGCTC 718
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 639 CGGTTCCTTGTAAGGTGACTGGCAAGTGTGGATCTGTGACAGTGAGGATGGTTCCAGCTC 698
Query 719 CTAGAGGTTCTGGTATTGTGGCTGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAA 778
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 CTAGAGGTGCGGGTATTGTGGCTGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAA 758
Query 779 TTGATGATGTTTTCACTTCCTCCAGGGGATCCACCAAAACTCTTGGAAACTTCGTCAAGG 838
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 759 TTGATGATGTTTTCACTTCCTCCAGGGGATCTACCAAAACTCTCGGAAACTTCGTCAAGG 818
Query 839 CTACATTCGATTGCCTTCAGAAGACTTACGGATTCCTTACCCCAGAGTTCTGGAAGGAGA 898
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 819 CTACATTCGATTGCCTTCAGAAGACTTATGGATTCCTTACCCCAGAGTTCTGGAAAGAGA 878
Query 899 CAAGATTCTCTAGATCACCATACCAAGAGCACACTGATTTCCTGGCGTCCAAGGCTCTTT 958
| || ||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 879 CGAGGTTCTCTAAATCACCATACCAAGAGTACACTGATTTCTTGGCGTCTAAGGCTCTTC 938
Query 959 CGACCAGCAAACCCGACCCAGTGGTTGAAGACCAAGCCTAAACAATGCTTCCACCTTGTG 1018
||| ||||||| |||| | |||||||||||||||||||||| |||||| ||||||||||
Sbjct 939 CGAGCAGCAAAACCGAGACGGTGGTTGAAGACCAAGCCTAAATAATGCTCCCACCTTGTG 998
Query 1019 TTCTTTTTGGATTATAATCCTTCATGAGTTAATTTTGGTTGAACCTTTGGTAGTATATGT 1078
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TTCTGTTTGGATTATCATCTTTCATGAGTTAATTTTGGTTGAACCTTTGGTAGTATATGT 1058
Query 1079 TGCTGGATTGTGCACCTTCTGTTTTCATCTCCTCTTCCAAACTACTTTATTTTTGCTTAT 1138
|||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||||
Sbjct 1059 TGCTGGATTGTGCACCTTATGTTTTCATCTC-T-T-CCAAACTACTTTATTTTTGCTTAT 1115
Query 1139 GGATCTTAATGTTCTAGTTTTGCTTTTACTTTTGTTGAGAAAAGTT 1184
||||||||||||||||| ||||||||| ||| ||||||||||||||
Sbjct 1116 GGATCTTAATGTTCTAGCTTTGCTTTTTCTTATGTTGAGAAAAGTT 1161
> Ahg475376 jgi|Araly1|475376|fgenesh2_kg.2__506__AT1G58684.1
Length=1072
Score = 752 bits (407), Expect = 0.0
Identities = 724/875 (83%), Gaps = 29/875 (3%)
Strand=Plus/Plus
Query 136 TCGACAATGGCCGAACGTGGTGGAGAACGTGGTGTTGAGCGTGGTGGAGAACGTGGTGAT 195
|||| |||||| ||| | || |||||||| || | |||||||| || || |||||| |
Sbjct 7 TCGAAAATGGCAGAAAGAGGAGGAGAACGCGGCGCAGAGCGTGGCGGTGACCGTGGTAAC 66
Query 196 TTCGGACGAGGATTCggaggccgtggaggtcgtggagatcgtggagggcgtggacgtgga 255
|||||||| |||||| ||| ||||| || | || | ||| || ||||| | ||
Sbjct 67 TTCGGACGTGGATTC---GGCGGTGGACGTGGCGGTGGCCGT-GA--TCGTGGTCCAAGA 120
Query 256 ggccgtggtggtcgtcgtggagggcgtgCC-AGTGAAGAAGAGAAATGGGTTCCAGTGAC 314
| || |||| || |||||||| |||||| | ||||||| ||||||||||||||||||
Sbjct 121 -G--GTCGTGGACGACGTGGAGGCCGTGCCTCG-GAAGAAGCGAAATGGGTTCCAGTGAC 176
Query 315 CAAGCTTGGTCGTCTCGTGGCGGCTGGTC-ATATCA-AGC-A-GATAGAGCAGATCTATC 370
|| || |||||||| || ||| | | ||| | | | | | ||||| |||||||||
Sbjct 177 GAAACTAGGTCGTCTAGT----GCTAGACAATAAAATAACGAGGCTAGAGGAGATCTATC 232
Query 371 TTCATTCACTCCCGGTTAAGGAGTACCAGATCATTGATATGCTCATCGGTCCAACATTGA 430
| ||||| || || || ||||||||||| ||||| ||| | || | ||||| | ||||
Sbjct 233 TCCATTCTCTGCCAGTGAAGGAGTACCAAATCATAGATCTTCTTGTTGGTCCTTCGTTGA 292
Query 431 AGGATGAGGTAATGAAAATCATGCCGGTTCAGAAACAAACCAGGGCTGGTCAAAGGACTA 490
| || ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 293 AAGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTA 352
Query 491 GATTCAAGGCCTTTGTTGTCGTTGGAGATGGTAATGGTCATGTTGGGTTGGGAGTGAAAT 550
||||||||||||||||||| |||||||||||||||||||||||||| ||||| || || |
Sbjct 353 GATTCAAGGCCTTTGTTGTTGTTGGAGATGGTAATGGTCATGTTGGTTTGGGTGTCAAGT 412
Query 551 GCTCTAAGGAAGTTGCTACGGCCATTAGAGGAGCGATTATTCTCGCTAAGCTGTCTGTTG 610
| ||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||
Sbjct 413 GTTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTTTCTGTTG 472
Query 611 TTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACATACGGTTCCTTGTA 670
|||| || |||||||| |||||||| || |||||||||||||||||||| || |||||||
Sbjct 473 TTCCGGTTAGGAGAGGCTACTGGGGGAATAAGATTGGGAAGCCACATACTGTGCCTTGTA 532
Query 671 AGGTGACTGGGAAGTGTGGATCTGTGACAGTGAGGATGGTTCCAGCTCCTAGAGGTTCTG 730
|||| |||||||||||||| ||||| || ||||| |||||||| |||||||||||| |||
Sbjct 533 AGGTTACTGGGAAGTGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCTAGAGGTGCTG 592
Query 731 GTATTGTGGCTGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAATTGATGATGT-T 789
||||||| |||||||| |||||||||||||||||||| || ||||| ||||||||||| |
Sbjct 593 GTATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGATGATGTCT 652
Query 790 TTCACTTCCTCCAGGGGATCCACCAAAACTCTTGGAAACTTCGTCAAGGCTACATTCGAT 849
|| ||||| ||||| ||||| || ||||| ||||||||||| |||||||||||||| |||
Sbjct 653 TT-ACTTCTTCCAGAGGATCTACTAAAACCCTTGGAAACTTTGTCAAGGCTACATTTGAT 711
Query 850 TGCCTTCAGAAGACTTACGGATTCCTTACCCCAGAGTTCTGGAAGGAGACAAGATTCTCT 909
||||| |||||||| || || |||||||| |||||||||||||| ||||| ||||||||
Sbjct 712 TGCCTGCAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACGAGATTCTCC 771
Query 910 AGATCACCATACCAAGAGCACACTGATTTCCTGGCGTCCAAGGCTCTTTCGACCAGC-AA 968
| ||| || ||||||||| ||||||||||||||||| | |||||| || || || || ||
Sbjct 772 AAATCGCCGTACCAAGAGTACACTGATTTCCTGGCGACTAAGGCTGTTCCGGCC-GCTAA 830
Query 969 ACCCGA-C-CC-AGTGGTTGAAGACCAAGCCTAAA 1000
| | | || || ||| ||||||||||| ||||
Sbjct 831 AGTT-ATCACCGAG-GGT-GAAGACCAAGCGTAAA 862
> Ahg938731 jgi|Araly1|938731|scaffold_502922.1
Length=860
Score = 699 bits (378), Expect = 0.0
Identities = 580/679 (85%), Gaps = 8/679 (1%)
Strand=Plus/Plus
Query 263 gtggtcgtcgtggagggcgtg--CCAGTGAAGAAGAGAAATGGGTTCCAGTGACCAAGCT 320
||||||| |||| ||| |||| ||| || || ||||||||||| |||||||| |||||
Sbjct 103 GTGGTCGCCGTGCAGGTCGTGCTCCA--GAGGAGGAGAAATGGGTGCCAGTGACTAAGCT 160
Query 321 TGGTCGTCTCGTGGCGGCTGGTCATATCAAGCAGATAGAGCAGATCTATCTTCATTCACT 380
||||||||| || || ||| | ||||| ||| | ||||||||||| || ||||| ||
Sbjct 161 TGGTCGTCTTGTAAAGGAAGGTAAGATCAAACAGCTTGAGCAGATCTACCTCCATTCTCT 220
Query 381 CCCGGTTAAGGAGTACCAGATCATTGATATGCTCATCGGTCCAACATTGAAGGATGAGGT 440
||| || ||||||||||||||||| ||| | ||| |||| || ||||||| || || ||
Sbjct 221 CCCAGTCAAGGAGTACCAGATCATAGATTTACTCGTCGGCCCTTCATTGAAAGACGAAGT 280
Query 441 AATGAAAATCATGCCGGTTCAGAAACAAACCAGGGCTGGTCAAAGGACTAGATTCAAGGC 500
|||||||||||||||||||| ||||||||||| || ||||| || || |||||||||||
Sbjct 281 GATGAAAATCATGCCGGTTCAAAAACAAACCAGAGCCGGTCAGAGAACGAGATTCAAGGC 340
Query 501 CTTTGTTGTCGTTGGAGATGGTAATGGTCATGTTGGGTTGGGAGTGAAATGCTCTAAGGA 560
||| || |||||||||||| |||| ||||| ||||| || |||||||||||||| |||||
Sbjct 341 CTTCGTCGTCGTTGGAGATAGTAACGGTCACGTTGGATTAGGAGTGAAATGCTCAAAGGA 400
Query 561 AGTTGCTACGGCCATTAGAGGAGCGATTATTCTCGCTAAGCTGTCTGTTGTTCCAG-TGA 619
|||||| ||||| || ||||| |||||||||||||| || ||||||| ||||| | |
Sbjct 401 AGTTGCGACGGCGATCAGAGGCGCGATTATTCTCGCGAAATTGTCTGTGGTTCC-GATTC 459
Query 620 GGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACATACGGTTCCTTGTAAGGTGACTG 679
| ||||||||||||||||||||||| || || |||||||||||||| ||||| || ||||
Sbjct 460 GAAGAGGTTACTGGGGTAACAAGATCGGAAAACCACATACGGTTCCGTGTAAAGTAACTG 519
Query 680 GGAAGTGTGGATCTGTGACAGTGA-GGATGGTTCCAGCTCCTAGAGGTTCTGGTATTGTG 738
| || ||||||||||| || || | | |||||||||||||| ||||||||||||||||||
Sbjct 520 GAAAATGTGGATCTGTTACCGT-ACGTATGGTTCCAGCTCCAAGAGGTTCTGGTATTGTG 578
Query 739 GCTGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAATTGATGATGTTTTCACTTCC 798
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 579 GCCGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCCGGAATTGATGATGTCTTCACTTCT 638
Query 799 TCCAGGGGATCCACCAAAACTCTTGGAAACTTCGTCAAGGCTACATTCGATTGCCTTCAG 858
|| || |||||||| ||||| |||||||||||||| ||||| ||||| ||||| |||||
Sbjct 639 TCTAGAGGATCCACGAAAACACTTGGAAACTTCGTTAAGGCAACATTTGATTGTCTTCAA 698
Query 859 AAGACTTACGGATTCCTTACCCCAGAGTTCTGGAAGGAGACAAGATTCTCTAGATCACCA 918
|||||||||||||||||||| || || |||||||| ||||| |||||||| | |||||||
Sbjct 699 AAGACTTACGGATTCCTTACACCGGAATTCTGGAAAGAGACGAGATTCTCAAAATCACCA 758
Query 919 TACCAAGAGCACACTGATT 937
|||||||||||||||||||
Sbjct 759 TACCAAGAGCACACTGATT 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5