BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41850.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483267 jgi|Araly1|483267|fgenesh2_kg.4__2327__AT2G41850.1 2176 0.0
> Ahg483267 jgi|Araly1|483267|fgenesh2_kg.4__2327__AT2G41850.1
Length=1493
Score = 2176 bits (1178), Expect = 0.0
Identities = 1319/1388 (95%), Gaps = 6/1388 (0%)
Strand=Plus/Plus
Query 78 AAAGAAAAAACACATTTCCTTGCCAATGGCCCGTTGTACCAACCTTGTTACCGTTTTCCT 137
||| ||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 49 AAAAAAAAAACACATATCCTTACCAATGGCCCGTTGTTCCAAACTTGTTACCGTTTTCCT 108
Query 138 ATTATGGGCTCTTTTGATGTTCTCATGGTGTAAAGCTTCAAGAATCAGCCCTAATGTATA 197
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 109 ATTATGGGCTCTTTTGATGTTCTCATGGTGCAAAGGTTCAAGAATCAGCCCTAATGGATA 168
Query 198 TGACCATTCTTATAAAAGGTTCAAATCCGATAGCTTAATCAAGCGAAGAGAGGACATCAC 257
||| |||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 169 TGATCATTCTTATAAAAGGTTCAAATCCGATAGCTTAATCAATCGAAAACAGGACATCAC 228
Query 258 GGGATTGAGAAGTTTTGTAAGAGCCTCTTTGCGGACTCCAACCACCGTTAGTGTTTCTGA 317
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 229 GGGCTTGAGAAGTTTTGTAAGAGCCTCTTTGCGGACTCCAACCACAGTTAGTGTTTCTGA 288
Query 318 TTTTGGAGCTAAAGGAGATGGAAAAACCGATGACACGCAGGCGTTCGTGAATGCGTGGAA 377
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TTATGGAGCTAAAGGAGATGGAAAAACCGATGACACGCAGGCGTTCGTGAATGCGTGGAA 348
Query 378 GAAAGCATGTTCTTCAAATGGAGCTGTTAATCTCCTAGTTCCTAAAGGGAATACTTATCT 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 349 GAAAGCATGTTCTTCAAATGGAGCTGTTAATCTCCTAGTTCCTAAAGGGAATACTTATTT 408
Query 438 CCTTAAGTCTATTCAATTAACTGGTCCATGCAATTCTATTC-TCACCGTTCAGATATTCG 496
|||||||||||||||||||||||||||||||| |||||| | | ||||||||||| ||||
Sbjct 409 CCTTAAGTCTATTCAATTAACTGGTCCATGCAGTTCTAT-CATTACCGTTCAGATGTTCG 467
Query 497 GAACGTTATCCGCATCTCAAAAACGATCGGATTACAAAGATATCAGCAAATGGATAATGT 556
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 468 GAACGTTATCCGCATCTCAAAAGCGAACGGATTACAAAGATATCAGCAAATGGATAATGT 527
Query 557 TTGATGGCGTTAACAATCTATCAGTCGATGGAGGCGACACTGGGGTTGTGGACGGAAACG 616
|||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 528 TTGACGGCGTTAACAGTCTATCAGTCGATGGCGGCGGCACTGGGGTTGTGGACGGAAACG 587
Query 617 GCGAAACGTGGTGGCAAAACTCATGCAAACGGAACAAAGCTAAGCCATGCACAAAAGCCC 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GCGAAACGTGGTGGCAAAACTCATGCAAACGGAACAAAGCTAAGCCATGCACAAAAGCCC 647
Query 677 CAACGGCTCTTACTTTTTACAACTCGAAAAGTCTGATAGTGAAGAATCTGAAGGTGAGAA 736
|||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 648 CAACGGCTCTTACTTTCTACAACTCGAAAAGTCTGATAGTGAAAAATCTGAGGGTGAGAA 707
Query 737 ATGCACAGCAGATCCAGATTTCGATTGAAAAATGCTCCAACGTTCAGGTCTCTAATGTCG 796
||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 708 ATGCACAGCAGATTCAGATTTCAATTGAAAAAAGCTCCAACGTTCAGGTCTCTAATGTCG 767
Query 797 TGGTAACTGCGCCTGCGGATAGTCCTAACACCGATGGTATTCATATCACTAACACCCAAA 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TGGTAACTGCGCCTGCGGATAGTCCTAACACCGATGGTATTCATATCACTAACACCCAAA 827
Query 857 ACATTCGAGTCTCCGAATCCATCATTGGAACAGGCGATGATTGCATATCTATTGAAAGTG 916
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 828 ACATTCGAGTCTCCGACTCCATCATAGGAACAGGTGATGATTGCATATCTATTGAAAGTG 887
Query 917 GATCACAAAATGTTCAAATCAATGATATAACTTGCGGTCCCGGTCACGGTATCAGTATTG 976
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 888 GATCACAAAATGTTCAAATCAATGATATAACTTGCGGTCCTGGTCACGGTATCAGTATTG 947
Query 977 GGAGCCTTGGAGATGACAATTCAAAGGCTTTTGTCTCAGGCGTGACTGTGGATGGTGCTA 1036
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 948 GGAGCCTTGGAGATGACAATTCAAAGGCTTTTGTCTCAGGCGTGACTGTGGATGGTGCAA 1007
Query 1037 AGCTTTCCGGTACAGACAATGGAGTAAGAATCAAAACTTACCAGGGAGGGTCAGGAACTG 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AGCTTTCCGGTACAGACAATGGAGTAAGAATCAAAACTTACCAGGGAGGGTCAGGAACTG 1067
Query 1097 CTAGCAATATTATATTTCAAAACATTCAGATGGATAATGTTAAGAATCCGATCATAATCG 1156
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1068 CTAGCAATATTATATTTCAAAACATTCAGATGGAAAATGTGAAGAATCCGATCATAATTG 1127
Query 1157 ACCAAGACTACTGCGACAAGAGCAAATGCACTACAGAGAAATCCGCGGTCCAAGTGAAGA 1216
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1128 ACCAAGACTACTGCGACAAGAGCAAATGCACTTCACAGCAATCCGCGGTCCAAGTGAAGA 1187
Query 1217 ACGTGGTGTACCGGGACATAAGTGGCACTAGCGCATCGGAAAACGCAATAACGTTTAACT 1276
||||||||||||| |||| || ||||||||||| ||||| || ||||||||||||||||
Sbjct 1188 ACGTGGTGTACCGAAACATTAGCGGCACTAGCGCGTCGGACAAGGCAATAACGTTTAACT 1247
Query 1277 GCAGCAAGAACTATCCATGCCAAGGAATTGTGCTTGACAGAGTGAACATTAAAGGAGGAA 1336
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 1248 GCAGCAAGAACTATCCATGCCTAGGAATTGTGCTTGACAAAGTGAACATTAAAGGAGGGA 1307
Query 1337 AAGCAACTTGCACCAATGCTAATGTGGTTGATAAAGGAGCTGT-TCTGCCTCAGTGCAAC 1395
||||||||||||||||||| ||||||||||||||||||||||| | | ||||| ||||||
Sbjct 1308 AAGCAACTTGCACCAATGCCAATGTGGTTGATAAAGGAGCTGTAT-TCCCTCAATGCAAC 1366
Query 1396 TCCACTTAGTTACTTAGATCGCTTAGATCTATCAAACACatacatatagatatataaata 1455
|||||||| ||| |||||| |||||||||||||||||||||||| | ||||||| |||
Sbjct 1367 TCCACTTAATTAATTAGATAT-TTAGATCTATCAAACACATACATAGATATATATATATA 1425
Query 1456 cag-atag 1462
|| ||||
Sbjct 1426 TAGTATAG 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5